EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000017244 (Gene tree)
Gene ID: 507639
Gene Symbol: PRPF18
Alias: -
Full Name: Bos taurus pre-mRNA processing factor 18 (PRPF18)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 55129 bases
Position: chr13:28284941-28340069
Accession: NM_001075323
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000022912	PRP4	PF08799.11	1.3e-13	1	1
ENSBTAP00000061262	PRP4	PF08799.11	1.4e-13	1	1
ENSBTAP00000022912	Prp18	PF02840.15	6.2e-63	1	1
ENSBTAP00000061262	Prp18	PF02840.15	7.4e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000077640	-	2197	-	ENSBTAP00000061262	351 (aa)	XP_005214233	UPI000383E9FC
ENSBTAT00000022912	-	2415	-	ENSBTAP00000022912	342 (aa)	-	Q2HJ41

Gene Model

Click here to download ENSBTAG00000017244's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000017244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000017244	PRPF18	100	99.123	ENSG00000165630	PRPF18	100	99.123	Homo_sapiens
ENSBTAG00000017244	PRPF18	100	84.795	ENSAPOG00000024177	prpf18	100	84.795	Acanthochromis_polyacanthus
ENSBTAG00000017244	PRPF18	100	99.708	ENSAMEG00000013591	-	100	99.708	Ailuropoda_melanoleuca
ENSBTAG00000017244	PRPF18	100	84.211	ENSACIG00000001186	prpf18	100	84.211	Amphilophus_citrinellus
ENSBTAG00000017244	PRPF18	98	84.776	ENSAOCG00000006572	prpf18	94	83.090	Amphiprion_ocellaris
ENSBTAG00000017244	PRPF18	100	85.088	ENSAPEG00000004564	prpf18	100	85.088	Amphiprion_percula
ENSBTAG00000017244	PRPF18	100	83.626	ENSATEG00000000303	prpf18	100	83.626	Anabas_testudineus
ENSBTAG00000017244	PRPF18	99	90.882	ENSAPLG00000003387	-	99	90.882	Anas_platyrhynchos
ENSBTAG00000017244	PRPF18	100	90.988	ENSACAG00000000818	-	100	90.988	Anolis_carolinensis
ENSBTAG00000017244	PRPF18	100	98.575	ENSANAG00000037445	-	100	98.575	Aotus_nancymaae
ENSBTAG00000017244	PRPF18	100	84.211	ENSACLG00000026296	prpf18	100	84.211	Astatotilapia_calliptera
ENSBTAG00000017244	PRPF18	100	83.714	ENSAMXG00000012848	prpf18	100	83.714	Astyanax_mexicanus
ENSBTAG00000017244	PRPF18	98	38.506	WBGene00009320	F32B6.3	97	38.506	Caenorhabditis_elegans
ENSBTAG00000017244	PRPF18	100	98.575	ENSCJAG00000009432	-	100	98.575	Callithrix_jacchus
ENSBTAG00000017244	PRPF18	100	99.708	ENSCAFG00000004735	-	100	99.708	Canis_familiaris
ENSBTAG00000017244	PRPF18	100	99.708	ENSCAFG00020007712	-	100	99.708	Canis_lupus_dingo
ENSBTAG00000017244	PRPF18	100	100.000	ENSCHIG00000000499	-	100	100.000	Capra_hircus
ENSBTAG00000017244	PRPF18	100	98.291	ENSTSYG00000003517	-	100	98.291	Carlito_syrichta
ENSBTAG00000017244	PRPF18	100	99.123	ENSCPOG00000021069	-	100	99.123	Cavia_porcellus
ENSBTAG00000017244	PRPF18	100	98.575	ENSCCAG00000036822	-	100	98.575	Cebus_capucinus
ENSBTAG00000017244	PRPF18	100	88.012	ENSCATG00000016633	-	100	88.012	Cercocebus_atys
ENSBTAG00000017244	PRPF18	100	98.830	ENSCLAG00000011770	-	100	98.830	Chinchilla_lanigera
ENSBTAG00000017244	PRPF18	100	99.145	ENSCSAG00000013109	-	100	99.145	Chlorocebus_sabaeus
ENSBTAG00000017244	PRPF18	100	89.045	ENSCPBG00000003100	-	100	89.045	Chrysemys_picta_bellii
ENSBTAG00000017244	PRPF18	99	54.412	ENSCING00000020481	-	97	54.412	Ciona_intestinalis
ENSBTAG00000017244	PRPF18	99	54.335	ENSCSAVG00000010546	-	99	54.360	Ciona_savignyi
ENSBTAG00000017244	PRPF18	100	98.860	ENSCANG00000034900	-	100	98.860	Colobus_angolensis_palliatus
ENSBTAG00000017244	PRPF18	100	98.538	ENSCGRG00001023665	Prpf18	100	98.538	Cricetulus_griseus_chok1gshd
ENSBTAG00000017244	PRPF18	100	98.538	ENSCGRG00000014690	Prpf18	100	98.538	Cricetulus_griseus_crigri
ENSBTAG00000017244	PRPF18	100	82.749	ENSCSEG00000005536	prpf18	99	82.749	Cynoglossus_semilaevis
ENSBTAG00000017244	PRPF18	100	83.918	ENSCVAG00000012401	prpf18	100	83.918	Cyprinodon_variegatus
ENSBTAG00000017244	PRPF18	100	84.211	ENSDARG00000058306	prpf18	100	84.211	Danio_rerio
ENSBTAG00000017244	PRPF18	100	98.538	ENSDNOG00000035607	-	100	98.538	Dasypus_novemcinctus
ENSBTAG00000017244	PRPF18	100	98.830	ENSDORG00000000858	Prpf18	100	98.830	Dipodomys_ordii
ENSBTAG00000017244	PRPF18	99	51.327	FBgn0027784	Prp18	98	51.032	Drosophila_melanogaster
ENSBTAG00000017244	PRPF18	100	86.842	ENSETEG00000015060	-	100	86.842	Echinops_telfairi
ENSBTAG00000017244	PRPF18	100	66.954	ENSEBUG00000016502	prpf18	99	66.092	Eptatretus_burgeri
ENSBTAG00000017244	PRPF18	100	99.430	ENSEASG00005019373	-	100	99.430	Equus_asinus_asinus
ENSBTAG00000017244	PRPF18	100	99.430	ENSECAG00000006997	PRPF18	100	99.430	Equus_caballus
ENSBTAG00000017244	PRPF18	92	63.291	ENSEEUG00000001171	-	100	63.291	Erinaceus_europaeus
ENSBTAG00000017244	PRPF18	100	81.924	ENSELUG00000022190	prpf18	100	81.924	Esox_lucius
ENSBTAG00000017244	PRPF18	100	99.430	ENSFCAG00000004436	-	100	99.430	Felis_catus
ENSBTAG00000017244	PRPF18	93	90.462	ENSFALG00000001912	-	97	90.462	Ficedula_albicollis
ENSBTAG00000017244	PRPF18	99	64.638	ENSFDAG00000010713	-	97	64.638	Fukomys_damarensis
ENSBTAG00000017244	PRPF18	94	98.750	ENSFDAG00000014026	-	100	98.750	Fukomys_damarensis
ENSBTAG00000017244	PRPF18	80	89.011	ENSFHEG00000020125	prpf18	98	89.139	Fundulus_heteroclitus
ENSBTAG00000017244	PRPF18	99	79.765	ENSGMOG00000012210	prpf18	99	79.765	Gadus_morhua
ENSBTAG00000017244	PRPF18	100	91.520	ENSGALG00000043593	-	100	91.520	Gallus_gallus
ENSBTAG00000017244	PRPF18	100	82.456	ENSGAFG00000006034	prpf18	100	82.456	Gambusia_affinis
ENSBTAG00000017244	PRPF18	100	81.579	ENSGACG00000012232	prpf18	100	81.579	Gasterosteus_aculeatus
ENSBTAG00000017244	PRPF18	100	91.813	ENSGAGG00000016878	-	100	91.813	Gopherus_agassizii
ENSBTAG00000017244	PRPF18	93	99.077	ENSGGOG00000025188	-	96	99.077	Gorilla_gorilla
ENSBTAG00000017244	PRPF18	100	84.211	ENSHBUG00000010264	prpf18	100	84.211	Haplochromis_burtoni
ENSBTAG00000017244	PRPF18	100	99.123	ENSHGLG00000018534	PRPF18	100	99.123	Heterocephalus_glaber_female
ENSBTAG00000017244	PRPF18	94	99.062	ENSHGLG00100012161	-	98	99.062	Heterocephalus_glaber_male
ENSBTAG00000017244	PRPF18	100	83.626	ENSHCOG00000015987	prpf18	100	83.626	Hippocampus_comes
ENSBTAG00000017244	PRPF18	100	81.586	ENSIPUG00000007432	prpf18	100	82.436	Ictalurus_punctatus
ENSBTAG00000017244	PRPF18	100	97.368	ENSSTOG00000008735	-	100	97.368	Ictidomys_tridecemlineatus
ENSBTAG00000017244	PRPF18	100	99.123	ENSJJAG00000024041	-	100	99.123	Jaculus_jaculus
ENSBTAG00000017244	PRPF18	100	72.046	ENSJJAG00000015191	-	100	72.046	Jaculus_jaculus
ENSBTAG00000017244	PRPF18	100	82.749	ENSKMAG00000012124	prpf18	100	82.749	Kryptolebias_marmoratus
ENSBTAG00000017244	PRPF18	99	83.136	ENSLBEG00000028466	prpf18	99	83.136	Labrus_bergylta
ENSBTAG00000017244	PRPF18	100	85.965	ENSLACG00000009885	prpf18	100	85.965	Latimeria_chalumnae
ENSBTAG00000017244	PRPF18	100	89.766	ENSLOCG00000016736	prpf18	100	89.766	Lepisosteus_oculatus
ENSBTAG00000017244	PRPF18	100	99.123	ENSLAFG00000007753	-	100	99.123	Loxodonta_africana
ENSBTAG00000017244	PRPF18	100	99.145	ENSMFAG00000000540	-	100	99.145	Macaca_fascicularis
ENSBTAG00000017244	PRPF18	100	99.145	ENSMMUG00000015071	PRPF18	100	99.145	Macaca_mulatta
ENSBTAG00000017244	PRPF18	100	99.145	ENSMNEG00000024679	-	100	99.145	Macaca_nemestrina
ENSBTAG00000017244	PRPF18	100	83.918	ENSMLEG00000031715	-	100	83.918	Mandrillus_leucophaeus
ENSBTAG00000017244	PRPF18	100	83.041	ENSMAMG00000006610	prpf18	100	83.041	Mastacembelus_armatus
ENSBTAG00000017244	PRPF18	100	84.211	ENSMZEG00005019392	prpf18	100	84.211	Maylandia_zebra
ENSBTAG00000017244	PRPF18	100	91.520	ENSMGAG00000005023	-	100	91.520	Meleagris_gallopavo
ENSBTAG00000017244	PRPF18	100	98.860	ENSMICG00000006572	-	100	98.860	Microcebus_murinus
ENSBTAG00000017244	PRPF18	100	99.123	ENSMOCG00000021468	Prpf18	100	99.123	Microtus_ochrogaster
ENSBTAG00000017244	PRPF18	100	82.749	ENSMMOG00000013012	prpf18	100	82.749	Mola_mola
ENSBTAG00000017244	PRPF18	100	85.380	ENSMODG00000024043	-	100	85.380	Monodelphis_domestica
ENSBTAG00000017244	PRPF18	96	92.308	ENSMODG00000016902	-	92	92.308	Monodelphis_domestica
ENSBTAG00000017244	PRPF18	100	77.714	ENSMALG00000005486	prpf18	100	78.000	Monopterus_albus
ENSBTAG00000017244	PRPF18	100	98.538	MGP_CAROLIEiJ_G0023143	Prpf18	100	98.630	Mus_caroli
ENSBTAG00000017244	PRPF18	100	98.246	ENSMUSG00000039449	Prpf18	100	98.630	Mus_musculus
ENSBTAG00000017244	PRPF18	100	98.830	MGP_PahariEiJ_G0019203	Prpf18	100	98.830	Mus_pahari
ENSBTAG00000017244	PRPF18	100	97.953	MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	Mus_spretus
ENSBTAG00000017244	PRPF18	100	99.415	ENSMPUG00000000938	-	100	99.415	Mustela_putorius_furo
ENSBTAG00000017244	PRPF18	100	98.830	ENSMLUG00000009200	-	100	98.830	Myotis_lucifugus
ENSBTAG00000017244	PRPF18	100	98.538	ENSNGAG00000012500	-	100	98.538	Nannospalax_galili
ENSBTAG00000017244	PRPF18	67	91.739	ENSNGAG00000023550	-	82	91.739	Nannospalax_galili
ENSBTAG00000017244	PRPF18	100	84.211	ENSNBRG00000001778	prpf18	100	84.211	Neolamprologus_brichardi
ENSBTAG00000017244	PRPF18	100	99.145	ENSNLEG00000012186	-	100	99.145	Nomascus_leucogenys
ENSBTAG00000017244	PRPF18	76	79.537	ENSMEUG00000005032	-	100	64.912	Notamacropus_eugenii
ENSBTAG00000017244	PRPF18	77	80.377	ENSOPRG00000002153	-	100	80.377	Ochotona_princeps
ENSBTAG00000017244	PRPF18	100	98.246	ENSODEG00000003770	-	100	98.246	Octodon_degus
ENSBTAG00000017244	PRPF18	98	83.582	ENSONIG00000014854	prpf18	96	83.582	Oreochromis_niloticus
ENSBTAG00000017244	PRPF18	100	94.444	ENSOANG00000015404	-	100	94.444	Ornithorhynchus_anatinus
ENSBTAG00000017244	PRPF18	100	99.415	ENSOCUG00000027756	-	100	94.737	Oryctolagus_cuniculus
ENSBTAG00000017244	PRPF18	100	82.336	ENSORLG00000010293	prpf18	100	82.336	Oryzias_latipes
ENSBTAG00000017244	PRPF18	100	83.918	ENSORLG00020001530	prpf18	100	83.918	Oryzias_latipes_hni
ENSBTAG00000017244	PRPF18	100	84.211	ENSORLG00015013705	prpf18	100	84.211	Oryzias_latipes_hsok
ENSBTAG00000017244	PRPF18	100	84.795	ENSOMEG00000009167	prpf18	100	84.795	Oryzias_melastigma
ENSBTAG00000017244	PRPF18	100	98.538	ENSOGAG00000007294	-	100	98.538	Otolemur_garnettii
ENSBTAG00000017244	PRPF18	100	100.000	ENSOARG00000006243	-	100	100.000	Ovis_aries
ENSBTAG00000017244	PRPF18	100	99.145	ENSPPAG00000041959	-	100	99.145	Pan_paniscus
ENSBTAG00000017244	PRPF18	100	99.415	ENSPPRG00000000107	-	100	99.415	Panthera_pardus
ENSBTAG00000017244	PRPF18	100	99.123	ENSPTIG00000021094	-	100	99.123	Panthera_tigris_altaica
ENSBTAG00000017244	PRPF18	100	99.145	ENSPTRG00000002306	PRPF18	100	99.145	Pan_troglodytes
ENSBTAG00000017244	PRPF18	100	98.860	ENSPANG00000023346	-	100	98.860	Papio_anubis
ENSBTAG00000017244	PRPF18	86	98.113	ENSPKIG00000014128	prpf18	96	82.336	Paramormyrops_kingsleyae
ENSBTAG00000017244	PRPF18	100	92.105	ENSPSIG00000016064	-	100	92.105	Pelodiscus_sinensis
ENSBTAG00000017244	PRPF18	100	78.363	ENSPMGG00000016486	prpf18	100	78.363	Periophthalmus_magnuspinnatus
ENSBTAG00000017244	PRPF18	100	98.830	ENSPEMG00000013704	Prpf18	100	98.830	Peromyscus_maniculatus_bairdii
ENSBTAG00000017244	PRPF18	100	74.566	ENSPMAG00000000204	prpf18	100	74.566	Petromyzon_marinus
ENSBTAG00000017244	PRPF18	93	95.692	ENSPCIG00000012963	-	99	95.886	Phascolarctos_cinereus
ENSBTAG00000017244	PRPF18	100	81.481	ENSPFOG00000017611	prpf18	100	81.481	Poecilia_formosa
ENSBTAG00000017244	PRPF18	100	83.041	ENSPLAG00000000369	prpf18	100	83.041	Poecilia_latipinna
ENSBTAG00000017244	PRPF18	100	83.041	ENSPMEG00000005183	prpf18	100	83.041	Poecilia_mexicana
ENSBTAG00000017244	PRPF18	100	82.164	ENSPREG00000015232	prpf18	100	82.164	Poecilia_reticulata
ENSBTAG00000017244	PRPF18	100	98.830	ENSPPYG00000002101	PRPF18	100	98.830	Pongo_abelii
ENSBTAG00000017244	PRPF18	100	80.117	ENSPCAG00000010833	-	100	80.117	Procavia_capensis
ENSBTAG00000017244	PRPF18	100	91.520	ENSPCOG00000013057	-	100	91.520	Propithecus_coquereli
ENSBTAG00000017244	PRPF18	100	61.696	ENSPVAG00000002947	-	100	61.696	Pteropus_vampyrus
ENSBTAG00000017244	PRPF18	100	84.211	ENSPNYG00000003554	prpf18	100	84.211	Pundamilia_nyererei
ENSBTAG00000017244	PRPF18	100	84.615	ENSPNAG00000023151	prpf18	100	84.615	Pygocentrus_nattereri
ENSBTAG00000017244	PRPF18	100	97.953	ENSRNOG00000018396	Prpf18	100	97.953	Rattus_norvegicus
ENSBTAG00000017244	PRPF18	100	98.575	ENSRBIG00000028028	-	100	98.575	Rhinopithecus_bieti
ENSBTAG00000017244	PRPF18	100	98.860	ENSRROG00000040695	-	100	98.860	Rhinopithecus_roxellana
ENSBTAG00000017244	PRPF18	100	98.575	ENSSBOG00000034482	-	100	98.575	Saimiri_boliviensis_boliviensis
ENSBTAG00000017244	PRPF18	100	95.906	ENSSHAG00000016463	-	100	95.906	Sarcophilus_harrisii
ENSBTAG00000017244	PRPF18	100	76.901	ENSSHAG00000009669	-	100	76.901	Sarcophilus_harrisii
ENSBTAG00000017244	PRPF18	77	44.528	ENSSFOG00015021154	-	89	48.927	Scleropages_formosus
ENSBTAG00000017244	PRPF18	98	82.899	ENSSFOG00015022118	prpf18	100	76.945	Scleropages_formosus
ENSBTAG00000017244	PRPF18	100	82.456	ENSSMAG00000005308	prpf18	100	82.456	Scophthalmus_maximus
ENSBTAG00000017244	PRPF18	100	84.503	ENSSDUG00000015428	prpf18	100	84.503	Seriola_dumerili
ENSBTAG00000017244	PRPF18	100	84.503	ENSSLDG00000023989	prpf18	100	84.503	Seriola_lalandi_dorsalis
ENSBTAG00000017244	PRPF18	100	69.006	ENSSARG00000005307	-	100	69.006	Sorex_araneus
ENSBTAG00000017244	PRPF18	100	91.813	ENSSPUG00000002619	-	100	91.813	Sphenodon_punctatus
ENSBTAG00000017244	PRPF18	100	83.918	ENSSPAG00000019502	prpf18	100	83.918	Stegastes_partitus
ENSBTAG00000017244	PRPF18	100	99.715	ENSSSCG00000026354	-	100	99.715	Sus_scrofa
ENSBTAG00000017244	PRPF18	100	91.520	ENSTGUG00000002286	-	100	91.520	Taeniopygia_guttata
ENSBTAG00000017244	PRPF18	100	81.579	ENSTRUG00000011278	prpf18	100	81.579	Takifugu_rubripes
ENSBTAG00000017244	PRPF18	100	81.287	ENSTNIG00000000911	prpf18	100	81.287	Tetraodon_nigroviridis
ENSBTAG00000017244	PRPF18	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSBTAG00000017244	PRPF18	100	98.830	ENSTTRG00000011117	PRPF18	100	98.830	Tursiops_truncatus
ENSBTAG00000017244	PRPF18	95	96.308	ENSUAMG00000001815	-	94	96.308	Ursus_americanus
ENSBTAG00000017244	PRPF18	100	94.737	ENSUMAG00000012329	-	100	94.737	Ursus_maritimus
ENSBTAG00000017244	PRPF18	100	93.567	ENSVPAG00000011486	-	100	93.567	Vicugna_pacos
ENSBTAG00000017244	PRPF18	100	99.715	ENSVVUG00000005453	-	100	99.715	Vulpes_vulpes
ENSBTAG00000017244	PRPF18	100	80.580	ENSXETG00000024057	prpf18	100	80.580	Xenopus_tropicalis
ENSBTAG00000017244	PRPF18	100	82.267	ENSXCOG00000020414	prpf18	100	82.267	Xiphophorus_couchianus
ENSBTAG00000017244	PRPF18	100	82.749	ENSXMAG00000004713	prpf18	91	82.749	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0016607	nuclear speck	-	IEA	Component