EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000017418 (Gene tree)
Gene ID: 510240
Gene Symbol: RRP1B
Alias: -
Full Name: ribosomal RNA processing 1B
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 25872 bases
Position: chr1:143729215-143755086
Accession: 34170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000023157	Nop52	PF05997.12	8.3e-67	1	1
ENSBTAP00000055027	Nop52	PF05997.12	1.5e-39	1	2
ENSBTAP00000055027	Nop52	PF05997.12	1.5e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000063907	-	3462	-	ENSBTAP00000055027	690 (aa)	-	G3MZM6
ENSBTAT00000023157	-	3603	-	ENSBTAP00000023157	737 (aa)	XP_002685189	E1BKN1

Gene Model

Click here to download ENSBTAG00000017418's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000017418's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000017418	RRP1B	100	67.546	ENSG00000160208	RRP1B	100	67.546	Homo_sapiens
ENSBTAG00000017418	RRP1B	66	49.206	ENSAPOG00000007490	-	53	47.097	Acanthochromis_polyacanthus
ENSBTAG00000017418	RRP1B	73	76.190	ENSAMEG00000011401	RRP1B	76	76.190	Ailuropoda_melanoleuca
ENSBTAG00000017418	RRP1B	59	51.389	ENSAOCG00000017894	-	94	55.556	Amphiprion_ocellaris
ENSBTAG00000017418	RRP1B	66	45.238	ENSAPEG00000024150	-	53	46.104	Amphiprion_percula
ENSBTAG00000017418	RRP1B	64	49.180	ENSATEG00000005045	-	57	49.180	Anabas_testudineus
ENSBTAG00000017418	RRP1B	94	43.478	ENSAPLG00000004310	RRP1B	81	55.090	Anas_platyrhynchos
ENSBTAG00000017418	RRP1B	100	65.876	ENSANAG00000034889	RRP1B	100	65.744	Aotus_nancymaae
ENSBTAG00000017418	RRP1B	100	63.852	ENSCJAG00000017077	RRP1B	100	63.456	Callithrix_jacchus
ENSBTAG00000017418	RRP1B	94	65.363	ENSCAFG00000010621	RRP1B	99	65.922	Canis_familiaris
ENSBTAG00000017418	RRP1B	100	66.316	ENSCAFG00020018901	RRP1B	100	66.842	Canis_lupus_dingo
ENSBTAG00000017418	RRP1B	100	92.402	ENSCHIG00000021519	RRP1B	100	92.402	Capra_hircus
ENSBTAG00000017418	RRP1B	100	57.600	ENSCPOG00000002396	RRP1B	100	57.656	Cavia_porcellus
ENSBTAG00000017418	RRP1B	100	66.095	ENSCCAG00000029384	RRP1B	100	66.095	Cebus_capucinus
ENSBTAG00000017418	RRP1B	100	66.227	ENSCATG00000017423	RRP1B	100	66.227	Cercocebus_atys
ENSBTAG00000017418	RRP1B	100	56.818	ENSCLAG00000005622	RRP1B	100	57.560	Chinchilla_lanigera
ENSBTAG00000017418	RRP1B	100	66.623	ENSCSAG00000007961	RRP1B	100	66.623	Chlorocebus_sabaeus
ENSBTAG00000017418	RRP1B	54	59.148	ENSCHOG00000002426	-	65	59.148	Choloepus_hoffmanni
ENSBTAG00000017418	RRP1B	99	48.966	ENSCPBG00000010310	RRP1B	98	47.188	Chrysemys_picta_bellii
ENSBTAG00000017418	RRP1B	100	66.491	ENSCANG00000040952	RRP1B	100	66.491	Colobus_angolensis_palliatus
ENSBTAG00000017418	RRP1B	100	59.235	ENSCGRG00001010889	-	100	59.235	Cricetulus_griseus_chok1gshd
ENSBTAG00000017418	RRP1B	100	58.839	ENSCGRG00001023882	-	100	58.839	Cricetulus_griseus_chok1gshd
ENSBTAG00000017418	RRP1B	57	44.056	ENSCGRG00001011920	Rrp1	76	49.853	Cricetulus_griseus_chok1gshd
ENSBTAG00000017418	RRP1B	94	58.182	ENSCGRG00000001553	Rrp1b	97	58.101	Cricetulus_griseus_crigri
ENSBTAG00000017418	RRP1B	57	44.056	ENSCGRG00000008915	Rrp1	76	49.853	Cricetulus_griseus_crigri
ENSBTAG00000017418	RRP1B	63	49.138	ENSCSEG00000020711	-	80	49.138	Cynoglossus_semilaevis
ENSBTAG00000017418	RRP1B	60	43.976	ENSDARG00000103337	rrp1	62	42.149	Danio_rerio
ENSBTAG00000017418	RRP1B	100	62.696	ENSDNOG00000032774	RRP1B	100	61.955	Dasypus_novemcinctus
ENSBTAG00000017418	RRP1B	59	44.568	ENSDNOG00000019880	RRP1	83	48.052	Dasypus_novemcinctus
ENSBTAG00000017418	RRP1B	98	50.143	ENSDORG00000005496	Rrp1b	100	55.524	Dipodomys_ordii
ENSBTAG00000017418	RRP1B	92	89.024	ENSETEG00000019489	RRP1B	91	86.905	Echinops_telfairi
ENSBTAG00000017418	RRP1B	100	73.448	ENSEASG00005001687	RRP1B	100	73.448	Equus_asinus_asinus
ENSBTAG00000017418	RRP1B	59	44.444	ENSEASG00005001673	RRP1	83	48.021	Equus_asinus_asinus
ENSBTAG00000017418	RRP1B	100	73.580	ENSECAG00000018018	RRP1B	100	73.580	Equus_caballus
ENSBTAG00000017418	RRP1B	59	44.218	ENSECAG00000015703	RRP1	83	48.021	Equus_caballus
ENSBTAG00000017418	RRP1B	64	55.000	ENSELUG00000015885	-	95	43.143	Esox_lucius
ENSBTAG00000017418	RRP1B	100	68.984	ENSFCAG00000010272	RRP1B	100	69.118	Felis_catus
ENSBTAG00000017418	RRP1B	56	45.366	ENSFCAG00000008434	RRP1	93	43.936	Felis_catus
ENSBTAG00000017418	RRP1B	97	41.597	ENSFALG00000002024	RRP1B	100	42.562	Ficedula_albicollis
ENSBTAG00000017418	RRP1B	60	42.609	ENSFDAG00000013728	RRP1	85	44.638	Fukomys_damarensis
ENSBTAG00000017418	RRP1B	96	56.944	ENSFDAG00000010899	RRP1B	96	56.250	Fukomys_damarensis
ENSBTAG00000017418	RRP1B	66	42.963	ENSFHEG00000016314	-	58	41.333	Fundulus_heteroclitus
ENSBTAG00000017418	RRP1B	62	48.598	ENSGMOG00000001953	-	68	48.598	Gadus_morhua
ENSBTAG00000017418	RRP1B	100	45.607	ENSGALG00000035696	RRP1B	50	55.469	Gallus_gallus
ENSBTAG00000017418	RRP1B	65	49.206	ENSGACG00000001438	rrp1	71	49.206	Gasterosteus_aculeatus
ENSBTAG00000017418	RRP1B	100	47.759	ENSGAGG00000000375	RRP1B	100	47.226	Gopherus_agassizii
ENSBTAG00000017418	RRP1B	100	67.546	ENSGGOG00000012069	RRP1B	100	67.546	Gorilla_gorilla
ENSBTAG00000017418	RRP1B	99	57.708	ENSHGLG00000004968	RRP1B	100	57.390	Heterocephalus_glaber_female
ENSBTAG00000017418	RRP1B	81	57.492	ENSHGLG00100002232	RRP1B	91	60.465	Heterocephalus_glaber_male
ENSBTAG00000017418	RRP1B	67	42.254	ENSHCOG00000018388	-	61	42.254	Hippocampus_comes
ENSBTAG00000017418	RRP1B	59	48.598	ENSIPUG00000000673	-	67	44.444	Ictalurus_punctatus
ENSBTAG00000017418	RRP1B	57	45.093	ENSSTOG00000011116	RRP1	86	47.150	Ictidomys_tridecemlineatus
ENSBTAG00000017418	RRP1B	99	61.733	ENSSTOG00000011790	RRP1B	96	62.418	Ictidomys_tridecemlineatus
ENSBTAG00000017418	RRP1B	100	54.796	ENSJJAG00000021279	Rrp1b	100	54.868	Jaculus_jaculus
ENSBTAG00000017418	RRP1B	55	43.836	ENSJJAG00000018886	Rrp1	84	47.781	Jaculus_jaculus
ENSBTAG00000017418	RRP1B	61	49.180	ENSKMAG00000005539	rrp1	71	49.180	Kryptolebias_marmoratus
ENSBTAG00000017418	RRP1B	75	51.762	ENSLACG00000017332	-	99	40.885	Latimeria_chalumnae
ENSBTAG00000017418	RRP1B	70	51.587	ENSLOCG00000004064	-	76	45.143	Lepisosteus_oculatus
ENSBTAG00000017418	RRP1B	94	59.259	ENSLAFG00000000766	RRP1B	95	67.045	Loxodonta_africana
ENSBTAG00000017418	RRP1B	53	47.304	ENSLAFG00000022901	RRP1	88	47.015	Loxodonta_africana
ENSBTAG00000017418	RRP1B	100	66.359	ENSMFAG00000039152	RRP1B	100	66.359	Macaca_fascicularis
ENSBTAG00000017418	RRP1B	100	64.729	ENSMMUG00000000104	RRP1B	100	64.729	Macaca_mulatta
ENSBTAG00000017418	RRP1B	100	66.227	ENSMNEG00000034269	RRP1B	100	66.227	Macaca_nemestrina
ENSBTAG00000017418	RRP1B	100	62.943	ENSMLEG00000040044	RRP1B	99	65.175	Mandrillus_leucophaeus
ENSBTAG00000017418	RRP1B	52	56.364	ENSMGAG00000014591	RRP1B	50	55.469	Meleagris_gallopavo
ENSBTAG00000017418	RRP1B	100	57.916	ENSMAUG00000021508	Rrp1b	100	57.916	Mesocricetus_auratus
ENSBTAG00000017418	RRP1B	100	68.241	ENSMICG00000004686	RRP1B	100	67.942	Microcebus_murinus
ENSBTAG00000017418	RRP1B	58	44.000	ENSMICG00000004700	RRP1	84	47.244	Microcebus_murinus
ENSBTAG00000017418	RRP1B	100	56.522	ENSMOCG00000001117	Rrp1b	100	56.728	Microtus_ochrogaster
ENSBTAG00000017418	RRP1B	100	60.417	ENSMODG00000021033	RRP1B	100	59.508	Monodelphis_domestica
ENSBTAG00000017418	RRP1B	51	43.085	ENSMALG00000010310	rrp1	96	43.272	Monopterus_albus
ENSBTAG00000017418	RRP1B	100	56.441	MGP_CAROLIEiJ_G0021376	Rrp1b	100	56.839	Mus_caroli
ENSBTAG00000017418	RRP1B	100	55.556	ENSMUSG00000058392	Rrp1b	100	55.688	Mus_musculus
ENSBTAG00000017418	RRP1B	100	57.105	MGP_PahariEiJ_G0023695	Rrp1b	100	56.707	Mus_pahari
ENSBTAG00000017418	RRP1B	100	54.894	MGP_SPRETEiJ_G0022290	Rrp1b	100	55.556	Mus_spretus
ENSBTAG00000017418	RRP1B	88	58.665	ENSMPUG00000009810	RRP1B	99	61.852	Mustela_putorius_furo
ENSBTAG00000017418	RRP1B	99	71.597	ENSMLUG00000007738	RRP1B	99	71.597	Myotis_lucifugus
ENSBTAG00000017418	RRP1B	100	58.762	ENSNGAG00000021073	Rrp1b	100	59.025	Nannospalax_galili
ENSBTAG00000017418	RRP1B	100	66.176	ENSNLEG00000001490	RRP1B	100	66.176	Nomascus_leucogenys
ENSBTAG00000017418	RRP1B	82	85.714	ENSMEUG00000003226	-	78	85.714	Notamacropus_eugenii
ENSBTAG00000017418	RRP1B	100	56.317	ENSODEG00000013177	RRP1B	100	56.317	Octodon_degus
ENSBTAG00000017418	RRP1B	99	50.464	ENSOANG00000006470	RRP1B	99	50.847	Ornithorhynchus_anatinus
ENSBTAG00000017418	RRP1B	98	49.568	ENSOCUG00000025931	RRP1B	100	51.532	Oryctolagus_cuniculus
ENSBTAG00000017418	RRP1B	61	52.874	ENSORLG00020007199	-	55	52.874	Oryzias_latipes_hni
ENSBTAG00000017418	RRP1B	68	43.972	ENSORLG00015004425	-	56	47.619	Oryzias_latipes_hsok
ENSBTAG00000017418	RRP1B	61	55.556	ENSOMEG00000016910	-	56	55.556	Oryzias_melastigma
ENSBTAG00000017418	RRP1B	51	47.520	ENSOGAG00000006105	RRP1	83	48.042	Otolemur_garnettii
ENSBTAG00000017418	RRP1B	98	59.530	ENSOGAG00000009872	RRP1B	83	73.176	Otolemur_garnettii
ENSBTAG00000017418	RRP1B	94	90.634	ENSOARG00000011314	RRP1B	100	90.634	Ovis_aries
ENSBTAG00000017418	RRP1B	94	65.874	ENSPPAG00000035319	RRP1B	99	65.782	Pan_paniscus
ENSBTAG00000017418	RRP1B	100	67.957	ENSPPRG00000010356	RRP1B	100	68.091	Panthera_pardus
ENSBTAG00000017418	RRP1B	51	47.215	ENSPPRG00000010656	RRP1	82	47.340	Panthera_pardus
ENSBTAG00000017418	RRP1B	77	75.182	ENSPTIG00000016894	RRP1B	95	75.912	Panthera_tigris_altaica
ENSBTAG00000017418	RRP1B	100	67.414	ENSPTRG00000013958	RRP1B	100	67.414	Pan_troglodytes
ENSBTAG00000017418	RRP1B	100	66.755	ENSPANG00000011090	RRP1B	100	66.755	Papio_anubis
ENSBTAG00000017418	RRP1B	78	49.265	ENSPKIG00000003422	-	72	49.265	Paramormyrops_kingsleyae
ENSBTAG00000017418	RRP1B	99	47.742	ENSPSIG00000008152	RRP1B	96	47.815	Pelodiscus_sinensis
ENSBTAG00000017418	RRP1B	100	58.730	ENSPEMG00000022490	Rrp1b	100	59.043	Peromyscus_maniculatus_bairdii
ENSBTAG00000017418	RRP1B	100	60.131	ENSPCIG00000015513	RRP1B	100	60.000	Phascolarctos_cinereus
ENSBTAG00000017418	RRP1B	57	40.758	ENSPFOG00000007424	-	51	41.397	Poecilia_formosa
ENSBTAG00000017418	RRP1B	64	46.512	ENSPMEG00000007042	-	57	46.512	Poecilia_mexicana
ENSBTAG00000017418	RRP1B	72	46.457	ENSPREG00000015673	-	68	46.457	Poecilia_reticulata
ENSBTAG00000017418	RRP1B	100	67.018	ENSPPYG00000011470	RRP1B	100	67.018	Pongo_abelii
ENSBTAG00000017418	RRP1B	85	86.316	ENSPCAG00000013723	RRP1B	91	86.316	Procavia_capensis
ENSBTAG00000017418	RRP1B	100	67.239	ENSPCOG00000017927	RRP1B	100	67.721	Propithecus_coquereli
ENSBTAG00000017418	RRP1B	99	63.720	ENSPVAG00000001436	RRP1B	99	64.729	Pteropus_vampyrus
ENSBTAG00000017418	RRP1B	100	58.223	ENSRNOG00000001194	Rrp1b	100	58.223	Rattus_norvegicus
ENSBTAG00000017418	RRP1B	100	63.289	ENSRBIG00000041689	RRP1B	100	63.289	Rhinopithecus_bieti
ENSBTAG00000017418	RRP1B	100	66.579	ENSRROG00000031499	RRP1B	100	66.579	Rhinopithecus_roxellana
ENSBTAG00000017418	RRP1B	52	43.401	ENSSBOG00000034689	RRP1	85	43.401	Saimiri_boliviensis_boliviensis
ENSBTAG00000017418	RRP1B	94	62.129	ENSSBOG00000034727	RRP1B	99	62.129	Saimiri_boliviensis_boliviensis
ENSBTAG00000017418	RRP1B	100	59.869	ENSSHAG00000017789	RRP1B	100	58.954	Sarcophilus_harrisii
ENSBTAG00000017418	RRP1B	51	40.657	ENSSFOG00015003932	-	60	50.000	Scleropages_formosus
ENSBTAG00000017418	RRP1B	66	47.244	ENSSMAG00000016847	-	88	42.593	Scophthalmus_maximus
ENSBTAG00000017418	RRP1B	66	49.219	ENSSDUG00000000551	-	53	49.219	Seriola_dumerili
ENSBTAG00000017418	RRP1B	66	50.000	ENSSLDG00000002538	-	54	49.219	Seriola_lalandi_dorsalis
ENSBTAG00000017418	RRP1B	76	64.211	ENSSARG00000003108	-	75	64.211	Sorex_araneus
ENSBTAG00000017418	RRP1B	64	47.619	ENSSPAG00000005370	-	51	47.619	Stegastes_partitus
ENSBTAG00000017418	RRP1B	100	66.260	ENSSSCG00000021698	RRP1B	100	65.818	Sus_scrofa
ENSBTAG00000017418	RRP1B	94	44.567	ENSTGUG00000005926	RRP1B	100	44.399	Taeniopygia_guttata
ENSBTAG00000017418	RRP1B	69	50.000	ENSTNIG00000005053	rrp1	76	51.136	Tetraodon_nigroviridis
ENSBTAG00000017418	RRP1B	79	74.852	ENSTBEG00000000422	RRP1B	100	74.260	Tupaia_belangeri
ENSBTAG00000017418	RRP1B	100	73.217	ENSTTRG00000000723	RRP1B	100	73.620	Tursiops_truncatus
ENSBTAG00000017418	RRP1B	100	67.476	ENSUAMG00000026765	RRP1B	100	67.476	Ursus_americanus
ENSBTAG00000017418	RRP1B	67	75.556	ENSUMAG00000025510	RRP1B	92	75.434	Ursus_maritimus
ENSBTAG00000017418	RRP1B	94	65.782	ENSVVUG00000024509	RRP1B	99	66.341	Vulpes_vulpes
ENSBTAG00000017418	RRP1B	60	51.402	ENSXETG00000013683	rrp1b	67	50.943	Xenopus_tropicalis
ENSBTAG00000017418	RRP1B	63	53.061	ENSXMAG00000023123	-	63	53.061	Xiphophorus_maculatus