EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000017604 (Gene tree)
Gene ID: 514541
Gene Symbol: RAB13
Alias: -
Full Name: Bos taurus RAB13%2C member RAS oncogene family (RAB13)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 4083 bases
Position: chr3:16453323-16457405
Accession: NM_001024540
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000023407	MMR_HSR1	PF01926.23	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000023407	-	1207	-	ENSBTAP00000023407	203 (aa)	-	A0A140T898

Gene Model

Click here to download ENSBTAG00000017604's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000017604's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000017604	RAB13	95	38.342	ENSBTAG00000014129	RAB5B	89	38.342
ENSBTAG00000017604	RAB13	81	44.242	ENSBTAG00000017803	RAB14	77	44.242
ENSBTAG00000017604	RAB13	78	42.405	ENSBTAG00000000905	RAB6B	76	42.405
ENSBTAG00000017604	RAB13	80	30.000	ENSBTAG00000020647	RASL11B	68	30.000
ENSBTAG00000017604	RAB13	78	30.380	ENSBTAG00000004876	RABL2B	68	30.380
ENSBTAG00000017604	RAB13	83	41.379	ENSBTAG00000003208	RAB33B	76	41.379
ENSBTAG00000017604	RAB13	89	36.735	ENSBTAG00000010923	RAB9A	95	36.735
ENSBTAG00000017604	RAB13	84	55.294	ENSBTAG00000022044	RAB35	84	55.294
ENSBTAG00000017604	RAB13	81	32.121	ENSBTAG00000031861	RHEB	87	32.121
ENSBTAG00000017604	RAB13	83	39.444	ENSBTAG00000046129	RAB34	56	40.667
ENSBTAG00000017604	RAB13	78	43.671	ENSBTAG00000000025	RAB6A	76	43.671
ENSBTAG00000017604	RAB13	81	38.788	ENSBTAG00000005362	RAB23	69	38.788
ENSBTAG00000017604	RAB13	94	41.667	ENSBTAG00000002475	RAB11B	94	41.667
ENSBTAG00000017604	RAB13	79	43.605	ENSBTAG00000021525	-	77	43.605
ENSBTAG00000017604	RAB13	91	37.037	ENSBTAG00000018053	RAB22A	97	37.037
ENSBTAG00000017604	RAB13	88	50.556	ENSBTAG00000010356	RAB12	74	50.556
ENSBTAG00000017604	RAB13	84	54.118	ENSBTAG00000003474	RAB15	80	54.118
ENSBTAG00000017604	RAB13	94	54.359	ENSBTAG00000016720	RAB1A	96	54.737
ENSBTAG00000017604	RAB13	88	54.190	ENSBTAG00000046485	RAB1B	60	54.190
ENSBTAG00000017604	RAB13	86	42.614	ENSBTAG00000050873	-	85	42.614
ENSBTAG00000017604	RAB13	57	31.624	ENSBTAG00000053459	-	67	31.624
ENSBTAG00000017604	RAB13	79	42.236	ENSBTAG00000006982	RAB5C	75	42.236
ENSBTAG00000017604	RAB13	80	30.864	ENSBTAG00000024233	-	74	30.864
ENSBTAG00000017604	RAB13	89	34.615	ENSBTAG00000046644	HRAS	85	39.506
ENSBTAG00000017604	RAB13	79	36.810	ENSBTAG00000001497	MRAS	78	36.810
ENSBTAG00000017604	RAB13	83	35.632	ENSBTAG00000002174	RERG	84	35.632
ENSBTAG00000017604	RAB13	88	36.813	ENSBTAG00000010193	RAB7A	88	36.813
ENSBTAG00000017604	RAB13	79	38.272	ENSBTAG00000046797	NRAS	85	38.272
ENSBTAG00000017604	RAB13	91	41.622	ENSBTAG00000018914	RAB25	86	41.622
ENSBTAG00000017604	RAB13	86	46.629	ENSBTAG00000019779	RAB39B	84	46.629
ENSBTAG00000017604	RAB13	86	43.750	ENSBTAG00000009871	RAB18	75	43.750
ENSBTAG00000017604	RAB13	67	30.882	ENSBTAG00000009366	ARF5	72	30.882
ENSBTAG00000017604	RAB13	78	48.734	ENSBTAG00000000948	RAB2A	84	48.734
ENSBTAG00000017604	RAB13	89	46.409	ENSBTAG00000002417	RAB30	89	46.409
ENSBTAG00000017604	RAB13	91	36.757	ENSBTAG00000009778	KRAS	97	37.306
ENSBTAG00000017604	RAB13	85	30.556	ENSBTAG00000018239	DNAJC27	66	30.556
ENSBTAG00000017604	RAB13	78	46.341	ENSBTAG00000034712	RAB33A	69	46.341
ENSBTAG00000017604	RAB13	79	39.130	ENSBTAG00000046533	RAB31	83	39.130
ENSBTAG00000017604	RAB13	83	48.214	ENSBTAG00000044207	RAB2B	81	49.045
ENSBTAG00000017604	RAB13	95	39.062	ENSBTAG00000046385	RAB5A	89	39.062
ENSBTAG00000017604	RAB13	93	37.824	ENSBTAG00000048711	-	95	37.500
ENSBTAG00000017604	RAB13	91	43.085	ENSBTAG00000018959	RAB11A	87	43.085
ENSBTAG00000017604	RAB13	95	36.869	ENSBTAG00000019820	RAB9B	97	36.869
ENSBTAG00000017604	RAB13	65	30.075	ENSBTAG00000016069	ARF4	71	30.075
ENSBTAG00000017604	RAB13	78	39.506	ENSBTAG00000017277	RAB36	50	39.506

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000017604	RAB13	100	98.030	ENSG00000143545	RAB13	100	98.030	Homo_sapiens
ENSBTAG00000017604	RAB13	99	75.622	ENSACIG00000008584	rab13	97	75.622	Amphilophus_citrinellus
ENSBTAG00000017604	RAB13	100	96.552	ENSANAG00000030247	-	100	96.552	Aotus_nancymaae
ENSBTAG00000017604	RAB13	99	78.713	ENSAMXG00000030712	rab13	99	78.713	Astyanax_mexicanus
ENSBTAG00000017604	RAB13	80	47.239	WBGene00019317	K02E10.1	75	47.239	Caenorhabditis_elegans
ENSBTAG00000017604	RAB13	100	96.552	ENSCJAG00000009933	-	100	96.552	Callithrix_jacchus
ENSBTAG00000017604	RAB13	100	99.507	ENSCHIG00000022271	-	100	99.507	Capra_hircus
ENSBTAG00000017604	RAB13	100	90.640	ENSCPOG00000011491	-	100	90.640	Cavia_porcellus
ENSBTAG00000017604	RAB13	100	97.537	ENSCCAG00000028502	-	100	97.537	Cebus_capucinus
ENSBTAG00000017604	RAB13	100	98.030	ENSCATG00000041779	-	100	98.030	Cercocebus_atys
ENSBTAG00000017604	RAB13	100	90.148	ENSCLAG00000006603	-	100	90.148	Chinchilla_lanigera
ENSBTAG00000017604	RAB13	100	98.030	ENSCANG00000036573	-	100	98.030	Colobus_angolensis_palliatus
ENSBTAG00000017604	RAB13	100	94.089	ENSCGRG00001021505	Rab13	100	94.089	Cricetulus_griseus_chok1gshd
ENSBTAG00000017604	RAB13	100	94.089	ENSCGRG00000012126	Rab13	100	94.089	Cricetulus_griseus_crigri
ENSBTAG00000017604	RAB13	99	75.000	ENSCSEG00000002358	rab13	99	75.000	Cynoglossus_semilaevis
ENSBTAG00000017604	RAB13	99	78.641	ENSDARG00000034771	rab13	99	78.641	Danio_rerio
ENSBTAG00000017604	RAB13	100	93.103	ENSDORG00000001591	Rab13	100	93.103	Dipodomys_ordii
ENSBTAG00000017604	RAB13	100	97.044	ENSEASG00005000683	-	100	97.044	Equus_asinus_asinus
ENSBTAG00000017604	RAB13	100	97.044	ENSECAG00000016551	RAB13	100	97.044	Equus_caballus
ENSBTAG00000017604	RAB13	100	88.670	ENSEEUG00000001233	-	100	88.670	Erinaceus_europaeus
ENSBTAG00000017604	RAB13	99	76.585	ENSELUG00000012801	rab13	99	76.585	Esox_lucius
ENSBTAG00000017604	RAB13	100	90.640	ENSFCAG00000045269	-	100	90.640	Felis_catus
ENSBTAG00000017604	RAB13	65	96.970	ENSFDAG00000014469	-	100	96.970	Fukomys_damarensis
ENSBTAG00000017604	RAB13	85	85.549	ENSFHEG00000021221	rab13	95	85.549	Fundulus_heteroclitus
ENSBTAG00000017604	RAB13	96	78.866	ENSGACG00000011925	rab13	96	78.866	Gasterosteus_aculeatus
ENSBTAG00000017604	RAB13	85	90.751	ENSGAGG00000000742	-	100	80.976	Gopherus_agassizii
ENSBTAG00000017604	RAB13	100	98.030	ENSGGOG00000023693	RAB13	100	98.030	Gorilla_gorilla
ENSBTAG00000017604	RAB13	100	89.163	ENSHGLG00000008749	RAB13	100	89.163	Heterocephalus_glaber_female
ENSBTAG00000017604	RAB13	100	89.163	ENSHGLG00100013608	RAB13	100	89.163	Heterocephalus_glaber_male
ENSBTAG00000017604	RAB13	85	86.127	ENSHCOG00000007440	rab13	95	86.127	Hippocampus_comes
ENSBTAG00000017604	RAB13	99	76.098	ENSIPUG00000003199	rab13	99	76.098	Ictalurus_punctatus
ENSBTAG00000017604	RAB13	100	96.552	ENSSTOG00000011222	-	100	96.552	Ictidomys_tridecemlineatus
ENSBTAG00000017604	RAB13	100	91.626	ENSJJAG00000010575	Rab13	100	91.626	Jaculus_jaculus
ENSBTAG00000017604	RAB13	99	75.000	ENSKMAG00000001908	rab13	99	75.000	Kryptolebias_marmoratus
ENSBTAG00000017604	RAB13	99	75.980	ENSLBEG00000026779	rab13	99	75.980	Labrus_bergylta
ENSBTAG00000017604	RAB13	85	77.907	ENSLACG00000008103	-	97	77.907	Latimeria_chalumnae
ENSBTAG00000017604	RAB13	100	98.030	ENSMFAG00000041018	RAB13	100	98.030	Macaca_fascicularis
ENSBTAG00000017604	RAB13	100	98.030	ENSMNEG00000028951	-	100	98.030	Macaca_nemestrina
ENSBTAG00000017604	RAB13	100	98.030	ENSMLEG00000042247	-	100	98.030	Mandrillus_leucophaeus
ENSBTAG00000017604	RAB13	99	74.272	ENSMAMG00000014602	rab13	99	74.272	Mastacembelus_armatus
ENSBTAG00000017604	RAB13	100	93.103	ENSMAUG00000015713	Rab13	100	93.103	Mesocricetus_auratus
ENSBTAG00000017604	RAB13	100	95.074	ENSMICG00000010340	-	100	95.074	Microcebus_murinus
ENSBTAG00000017604	RAB13	100	94.581	ENSMOCG00000021448	Rab13	100	94.581	Microtus_ochrogaster
ENSBTAG00000017604	RAB13	99	90.547	ENSMODG00000017295	-	84	90.547	Monodelphis_domestica
ENSBTAG00000017604	RAB13	100	91.626	MGP_CAROLIEiJ_G0025227	Rab13	100	91.626	Mus_caroli
ENSBTAG00000017604	RAB13	100	90.640	ENSMUSG00000027935	Rab13	100	90.640	Mus_musculus
ENSBTAG00000017604	RAB13	100	91.133	MGP_PahariEiJ_G0026671	Rab13	100	91.133	Mus_pahari
ENSBTAG00000017604	RAB13	100	94.581	ENSNGAG00000010309	Rab13	100	94.581	Nannospalax_galili
ENSBTAG00000017604	RAB13	99	74.634	ENSNBRG00000004124	rab13	99	74.634	Neolamprologus_brichardi
ENSBTAG00000017604	RAB13	100	98.030	ENSNLEG00000028944	-	100	98.030	Nomascus_leucogenys
ENSBTAG00000017604	RAB13	100	89.655	ENSMEUG00000009667	-	100	89.655	Notamacropus_eugenii
ENSBTAG00000017604	RAB13	63	97.638	ENSODEG00000012634	-	100	97.638	Octodon_degus
ENSBTAG00000017604	RAB13	100	88.670	ENSODEG00000010443	-	100	88.670	Octodon_degus
ENSBTAG00000017604	RAB13	99	76.238	ENSONIG00000006340	rab13	99	76.238	Oreochromis_niloticus
ENSBTAG00000017604	RAB13	87	96.045	ENSOCUG00000006286	-	99	96.045	Oryctolagus_cuniculus
ENSBTAG00000017604	RAB13	95	80.208	ENSOMEG00000008210	rab13	99	75.243	Oryzias_melastigma
ENSBTAG00000017604	RAB13	100	93.103	ENSOGAG00000016969	-	100	93.103	Otolemur_garnettii
ENSBTAG00000017604	RAB13	100	98.030	ENSPPAG00000028435	-	100	98.030	Pan_paniscus
ENSBTAG00000017604	RAB13	100	90.640	ENSPPRG00000008865	-	100	90.640	Panthera_pardus
ENSBTAG00000017604	RAB13	100	98.030	ENSPTRG00000001370	RAB13	100	98.030	Pan_troglodytes
ENSBTAG00000017604	RAB13	100	98.030	ENSPANG00000004479	-	100	98.030	Papio_anubis
ENSBTAG00000017604	RAB13	99	75.000	ENSPMGG00000007680	rab13	99	75.000	Periophthalmus_magnuspinnatus
ENSBTAG00000017604	RAB13	53	97.222	ENSPEMG00000017353	-	81	97.222	Peromyscus_maniculatus_bairdii
ENSBTAG00000017604	RAB13	100	90.148	ENSPCIG00000029350	-	100	90.148	Phascolarctos_cinereus
ENSBTAG00000017604	RAB13	95	74.112	ENSPLAG00000005832	RAB13	93	83.815	Poecilia_latipinna
ENSBTAG00000017604	RAB13	85	83.815	ENSPREG00000017567	rab13	99	73.301	Poecilia_reticulata
ENSBTAG00000017604	RAB13	100	98.030	ENSPPYG00000000790	-	100	98.030	Pongo_abelii
ENSBTAG00000017604	RAB13	100	96.059	ENSPCOG00000012189	-	100	96.059	Propithecus_coquereli
ENSBTAG00000017604	RAB13	100	94.089	ENSPVAG00000011095	-	100	94.089	Pteropus_vampyrus
ENSBTAG00000017604	RAB13	85	86.127	ENSPNAG00000004189	rab13	92	86.127	Pygocentrus_nattereri
ENSBTAG00000017604	RAB13	100	91.133	ENSRNOG00000016733	Rab13	100	91.133	Rattus_norvegicus
ENSBTAG00000017604	RAB13	100	97.537	ENSRBIG00000008552	-	100	97.537	Rhinopithecus_bieti
ENSBTAG00000017604	RAB13	100	97.537	ENSRROG00000036885	-	100	97.537	Rhinopithecus_roxellana
ENSBTAG00000017604	RAB13	100	97.044	ENSSBOG00000020342	-	100	97.044	Saimiri_boliviensis_boliviensis
ENSBTAG00000017604	RAB13	100	89.163	ENSSHAG00000011866	-	100	89.163	Sarcophilus_harrisii
ENSBTAG00000017604	RAB13	100	98.030	ENSSSCG00000006564	-	100	98.030	Sus_scrofa
ENSBTAG00000017604	RAB13	99	75.980	ENSTRUG00000024177	rab13	99	75.980	Takifugu_rubripes
ENSBTAG00000017604	RAB13	100	95.074	ENSTBEG00000012734	-	100	95.074	Tupaia_belangeri
ENSBTAG00000017604	RAB13	100	98.030	ENSTTRG00000011183	-	100	98.030	Tursiops_truncatus
ENSBTAG00000017604	RAB13	70	80.420	ENSXETG00000020729	rab13	99	77.019	Xenopus_tropicalis
ENSBTAG00000017604	RAB13	85	82.659	ENSXCOG00000019533	rab13	93	82.659	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	-	ISS	Function
GO:0005802	trans-Golgi network	-	ISS	Component
GO:0005886	plasma membrane	-	ISS	Component
GO:0005923	bicellular tight junction	-	ISS	Component
GO:0010737	protein kinase A signaling	-	ISS	Process
GO:0016197	endosomal transport	-	ISS	Process
GO:0016328	lateral plasma membrane	-	ISS	Component
GO:0030027	lamellipodium	-	ISS	Component
GO:0030139	endocytic vesicle	-	ISS	Component
GO:0030659	cytoplasmic vesicle membrane	-	IEA	Component
GO:0030866	cortical actin cytoskeleton organization	-	ISS	Process
GO:0031175	neuron projection development	-	ISS	Process
GO:0031410	cytoplasmic vesicle	-	ISS	Component
GO:0032456	endocytic recycling	-	ISS	Process
GO:0032593	insulin-responsive compartment	-	ISS	Component
GO:0032869	cellular response to insulin stimulus	-	ISS	Process
GO:0035767	endothelial cell chemotaxis	-	ISS	Process
GO:0043005	neuron projection	-	ISS	Component
GO:0044795	trans-Golgi network to recycling endosome transport	-	ISS	Process
GO:0055037	recycling endosome	-	ISS	Component
GO:0055038	recycling endosome membrane	-	IEA	Component
GO:0070830	bicellular tight junction assembly	-	ISS	Process
GO:0072659	protein localization to plasma membrane	-	ISS	Process
GO:0097368	establishment of Sertoli cell barrier	-	ISS	Process
GO:1902463	protein localization to cell leading edge	-	ISS	Process