EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000017999 (Gene tree)
Gene ID: 541118
Gene Symbol: TNRC6A
Alias: -
Full Name: trinucleotide repeat containing 6A
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 96512 bases
Position: chr25:22384180-22480691
Accession: 36204
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000058757	Ago_hook	PF10427.9	2.3e-18	1	1
ENSBTAP00000067169	Ago_hook	PF10427.9	3e-18	1	1
ENSBTAP00000055965	Ago_hook	PF10427.9	6.1e-18	1	1
ENSBTAP00000023950	Ago_hook	PF10427.9	1.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000087097	-	7854	-	ENSBTAP00000067169	1850 (aa)	XP_024840967	UPI000D538690
ENSBTAT00000023950	-	7237	-	ENSBTAP00000023950	1856 (aa)	-	F1MX25
ENSBTAT00000064228	-	7417	-	ENSBTAP00000055965	1916 (aa)	-	G3N258
ENSBTAT00000076208	-	7836	XM_010819375	ENSBTAP00000058757	1899 (aa)	XP_010817677	UPI000D53296B
ENSBTAT00000076904	-	7093	XM_024985200	ENSBTAP00000067682	1808 (aa)	XP_024840968	-

Gene Model

Click here to download ENSBTAG00000017999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000017999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000017999	TNRC6A	99	40.720	ENSBTAG00000021076	TNRC6B	100	37.506
ENSBTAG00000017999	TNRC6A	95	48.603	ENSBTAG00000018658	TNRC6C	99	42.732

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000017999	TNRC6A	100	95.086	ENSG00000090905	TNRC6A	100	95.452	Homo_sapiens
ENSBTAG00000017999	TNRC6A	99	96.118	ENSAMEG00000009333	TNRC6A	99	96.118	Ailuropoda_melanoleuca
ENSBTAG00000017999	TNRC6A	99	81.633	ENSAPLG00000009978	TNRC6A	100	81.894	Anas_platyrhynchos
ENSBTAG00000017999	TNRC6A	100	53.525	ENSACAG00000011857	TNRC6A	100	55.561	Anolis_carolinensis
ENSBTAG00000017999	TNRC6A	100	95.231	ENSANAG00000025252	TNRC6A	100	95.283	Aotus_nancymaae
ENSBTAG00000017999	TNRC6A	93	57.135	ENSAMXG00000019919	tnrc6a	99	57.344	Astyanax_mexicanus
ENSBTAG00000017999	TNRC6A	99	94.357	ENSCJAG00000020677	TNRC6A	100	93.711	Callithrix_jacchus
ENSBTAG00000017999	TNRC6A	99	96.166	ENSCAFG00000017531	TNRC6A	100	95.911	Canis_familiaris
ENSBTAG00000017999	TNRC6A	99	94.380	ENSCAFG00020021160	TNRC6A	99	94.590	Canis_lupus_dingo
ENSBTAG00000017999	TNRC6A	100	98.159	ENSCHIG00000019448	TNRC6A	100	98.159	Capra_hircus
ENSBTAG00000017999	TNRC6A	100	94.919	ENSTSYG00000012711	TNRC6A	100	95.285	Carlito_syrichta
ENSBTAG00000017999	TNRC6A	99	94.322	ENSCPOG00000036684	TNRC6A	100	94.585	Cavia_porcellus
ENSBTAG00000017999	TNRC6A	100	94.921	ENSCCAG00000033664	TNRC6A	100	95.340	Cebus_capucinus
ENSBTAG00000017999	TNRC6A	99	95.323	ENSCATG00000019284	TNRC6A	99	95.323	Cercocebus_atys
ENSBTAG00000017999	TNRC6A	100	90.414	ENSCLAG00000010217	TNRC6A	100	90.938	Chinchilla_lanigera
ENSBTAG00000017999	TNRC6A	99	95.593	ENSCSAG00000006561	TNRC6A	100	93.112	Chlorocebus_sabaeus
ENSBTAG00000017999	TNRC6A	94	90.470	ENSCHOG00000009374	TNRC6A	92	90.946	Choloepus_hoffmanni
ENSBTAG00000017999	TNRC6A	93	81.755	ENSCPBG00000001881	TNRC6A	99	82.278	Chrysemys_picta_bellii
ENSBTAG00000017999	TNRC6A	100	95.862	ENSCANG00000041549	TNRC6A	100	95.862	Colobus_angolensis_palliatus
ENSBTAG00000017999	TNRC6A	100	92.913	ENSCGRG00001015021	Tnrc6a	100	93.333	Cricetulus_griseus_chok1gshd
ENSBTAG00000017999	TNRC6A	99	91.959	ENSCGRG00000013351	Tnrc6a	99	92.441	Cricetulus_griseus_crigri
ENSBTAG00000017999	TNRC6A	93	56.966	ENSDARG00000079688	tnrc6a	99	57.353	Danio_rerio
ENSBTAG00000017999	TNRC6A	99	92.906	ENSDNOG00000013989	TNRC6A	99	93.274	Dasypus_novemcinctus
ENSBTAG00000017999	TNRC6A	99	85.090	ENSETEG00000014658	TNRC6A	99	85.037	Echinops_telfairi
ENSBTAG00000017999	TNRC6A	100	96.324	ENSEASG00005017693	TNRC6A	100	96.324	Equus_asinus_asinus
ENSBTAG00000017999	TNRC6A	99	96.314	ENSECAG00000025056	TNRC6A	100	96.271	Equus_caballus
ENSBTAG00000017999	TNRC6A	99	88.836	ENSEEUG00000004530	TNRC6A	99	89.256	Erinaceus_europaeus
ENSBTAG00000017999	TNRC6A	100	94.226	ENSFCAG00000025236	TNRC6A	100	94.593	Felis_catus
ENSBTAG00000017999	TNRC6A	99	79.283	ENSFALG00000003757	TNRC6A	97	80.052	Ficedula_albicollis
ENSBTAG00000017999	TNRC6A	93	81.902	ENSGALG00000006068	TNRC6A	99	83.179	Gallus_gallus
ENSBTAG00000017999	TNRC6A	93	81.081	ENSGAGG00000023209	TNRC6A	99	81.887	Gopherus_agassizii
ENSBTAG00000017999	TNRC6A	99	94.864	ENSGGOG00000005137	TNRC6A	99	95.253	Gorilla_gorilla
ENSBTAG00000017999	TNRC6A	99	92.691	ENSHGLG00000012474	-	100	92.838	Heterocephalus_glaber_female
ENSBTAG00000017999	TNRC6A	96	74.103	ENSHGLG00000007368	-	93	73.823	Heterocephalus_glaber_female
ENSBTAG00000017999	TNRC6A	99	92.671	ENSHGLG00100012496	-	100	92.624	Heterocephalus_glaber_male
ENSBTAG00000017999	TNRC6A	99	94.035	ENSSTOG00000023394	TNRC6A	99	92.108	Ictidomys_tridecemlineatus
ENSBTAG00000017999	TNRC6A	99	69.549	ENSLACG00000006277	TNRC6A	100	70.274	Latimeria_chalumnae
ENSBTAG00000017999	TNRC6A	99	83.002	ENSLOCG00000005517	tnrc6a	93	83.002	Lepisosteus_oculatus
ENSBTAG00000017999	TNRC6A	99	94.060	ENSLAFG00000004209	TNRC6A	99	94.450	Loxodonta_africana
ENSBTAG00000017999	TNRC6A	100	93.313	ENSMFAG00000003824	TNRC6A	100	93.673	Macaca_fascicularis
ENSBTAG00000017999	TNRC6A	100	95.024	ENSMMUG00000020428	TNRC6A	100	95.443	Macaca_mulatta
ENSBTAG00000017999	TNRC6A	100	94.424	ENSMNEG00000034854	TNRC6A	100	94.789	Macaca_nemestrina
ENSBTAG00000017999	TNRC6A	99	93.461	ENSMLEG00000042737	TNRC6A	97	93.565	Mandrillus_leucophaeus
ENSBTAG00000017999	TNRC6A	95	81.946	ENSMGAG00000006455	TNRC6A	99	77.553	Meleagris_gallopavo
ENSBTAG00000017999	TNRC6A	100	92.808	ENSMAUG00000012750	Tnrc6a	100	93.228	Mesocricetus_auratus
ENSBTAG00000017999	TNRC6A	100	95.295	ENSMICG00000030685	TNRC6A	100	95.557	Microcebus_murinus
ENSBTAG00000017999	TNRC6A	100	93.225	ENSMOCG00000000152	Tnrc6a	100	93.330	Microtus_ochrogaster
ENSBTAG00000017999	TNRC6A	99	81.757	ENSMODG00000016348	TNRC6A	99	79.532	Monodelphis_domestica
ENSBTAG00000017999	TNRC6A	99	91.680	MGP_CAROLIEiJ_G0030425	Tnrc6a	100	93.495	Mus_caroli
ENSBTAG00000017999	TNRC6A	100	92.174	ENSMUSG00000052707	Tnrc6a	99	93.710	Mus_musculus
ENSBTAG00000017999	TNRC6A	99	92.320	MGP_PahariEiJ_G0013635	Tnrc6a	100	93.996	Mus_pahari
ENSBTAG00000017999	TNRC6A	99	92.154	MGP_SPRETEiJ_G0031539	Tnrc6a	100	93.710	Mus_spretus
ENSBTAG00000017999	TNRC6A	99	84.319	ENSMPUG00000012324	TNRC6A	100	84.482	Mustela_putorius_furo
ENSBTAG00000017999	TNRC6A	99	92.835	ENSMLUG00000002701	TNRC6A	100	92.782	Myotis_lucifugus
ENSBTAG00000017999	TNRC6A	99	94.167	ENSNGAG00000020702	Tnrc6a	100	94.482	Nannospalax_galili
ENSBTAG00000017999	TNRC6A	99	92.946	ENSNLEG00000011851	TNRC6A	99	92.803	Nomascus_leucogenys
ENSBTAG00000017999	TNRC6A	76	89.480	ENSMEUG00000015959	-	74	89.480	Notamacropus_eugenii
ENSBTAG00000017999	TNRC6A	95	98.881	ENSOPRG00000005819	TNRC6A	96	98.881	Ochotona_princeps
ENSBTAG00000017999	TNRC6A	99	88.420	ENSODEG00000012802	TNRC6A	99	88.924	Octodon_degus
ENSBTAG00000017999	TNRC6A	89	83.082	ENSOANG00000007672	TNRC6A	99	83.353	Ornithorhynchus_anatinus
ENSBTAG00000017999	TNRC6A	99	91.684	ENSOCUG00000004325	TNRC6A	100	92.053	Oryctolagus_cuniculus
ENSBTAG00000017999	TNRC6A	99	95.318	ENSOGAG00000006666	TNRC6A	98	95.581	Otolemur_garnettii
ENSBTAG00000017999	TNRC6A	99	97.324	ENSOARG00000017950	TNRC6A	98	98.483	Ovis_aries
ENSBTAG00000017999	TNRC6A	99	95.357	ENSPPAG00000028379	TNRC6A	100	95.357	Pan_paniscus
ENSBTAG00000017999	TNRC6A	100	94.226	ENSPPRG00000005861	TNRC6A	100	94.593	Panthera_pardus
ENSBTAG00000017999	TNRC6A	99	93.145	ENSPTIG00000006346	TNRC6A	99	93.459	Panthera_tigris_altaica
ENSBTAG00000017999	TNRC6A	99	94.712	ENSPTRG00000007898	TNRC6A	99	94.712	Pan_troglodytes
ENSBTAG00000017999	TNRC6A	100	92.537	ENSPANG00000018523	TNRC6A	100	92.902	Papio_anubis
ENSBTAG00000017999	TNRC6A	89	75.862	ENSPKIG00000012859	tnrc6a	96	78.919	Paramormyrops_kingsleyae
ENSBTAG00000017999	TNRC6A	79	77.230	ENSPSIG00000003965	TNRC6A	100	78.285	Pelodiscus_sinensis
ENSBTAG00000017999	TNRC6A	100	92.647	ENSPEMG00000016318	Tnrc6a	100	93.165	Peromyscus_maniculatus_bairdii
ENSBTAG00000017999	TNRC6A	99	83.666	ENSPCIG00000012106	TNRC6A	99	83.666	Phascolarctos_cinereus
ENSBTAG00000017999	TNRC6A	99	94.241	ENSPPYG00000007202	TNRC6A	100	92.253	Pongo_abelii
ENSBTAG00000017999	TNRC6A	95	98.969	ENSPCAG00000008260	TNRC6A	94	98.969	Procavia_capensis
ENSBTAG00000017999	TNRC6A	100	93.096	ENSPCOG00000010134	TNRC6A	100	93.410	Propithecus_coquereli
ENSBTAG00000017999	TNRC6A	88	71.386	ENSPVAG00000012066	TNRC6A	97	71.801	Pteropus_vampyrus
ENSBTAG00000017999	TNRC6A	100	91.810	ENSRNOG00000024737	Tnrc6a	100	92.227	Rattus_norvegicus
ENSBTAG00000017999	TNRC6A	99	95.011	ENSRBIG00000014222	TNRC6A	99	95.431	Rhinopithecus_bieti
ENSBTAG00000017999	TNRC6A	99	95.263	ENSRROG00000032360	TNRC6A	100	93.245	Rhinopithecus_roxellana
ENSBTAG00000017999	TNRC6A	99	94.523	ENSSBOG00000036197	TNRC6A	100	96.548	Saimiri_boliviensis_boliviensis
ENSBTAG00000017999	TNRC6A	93	83.248	ENSSHAG00000008811	TNRC6A	99	84.518	Sarcophilus_harrisii
ENSBTAG00000017999	TNRC6A	90	66.038	ENSSFOG00015008920	tnrc6a	99	63.557	Scleropages_formosus
ENSBTAG00000017999	TNRC6A	73	83.152	ENSSARG00000002479	TNRC6A	89	82.428	Sorex_araneus
ENSBTAG00000017999	TNRC6A	92	78.319	ENSSPUG00000010525	TNRC6A	99	78.783	Sphenodon_punctatus
ENSBTAG00000017999	TNRC6A	100	95.875	ENSSSCG00000038870	TNRC6A	100	97.541	Sus_scrofa
ENSBTAG00000017999	TNRC6A	99	80.000	ENSTGUG00000006142	TNRC6A	100	80.355	Taeniopygia_guttata
ENSBTAG00000017999	TNRC6A	99	92.082	ENSTBEG00000014965	TNRC6A	99	92.449	Tupaia_belangeri
ENSBTAG00000017999	TNRC6A	92	97.950	ENSTTRG00000002008	TNRC6A	90	97.950	Tursiops_truncatus
ENSBTAG00000017999	TNRC6A	81	95.190	ENSUAMG00000006656	-	94	94.799	Ursus_americanus
ENSBTAG00000017999	TNRC6A	100	95.156	ENSUMAG00000008274	TNRC6A	100	96.986	Ursus_maritimus
ENSBTAG00000017999	TNRC6A	56	87.065	ENSVPAG00000010764	-	57	87.065	Vicugna_pacos
ENSBTAG00000017999	TNRC6A	99	96.113	ENSVVUG00000005380	TNRC6A	99	96.113	Vulpes_vulpes
ENSBTAG00000017999	TNRC6A	96	65.343	ENSXETG00000030437	TNRC6A	99	65.696	Xenopus_tropicalis