EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000018097 (Gene tree)
Gene ID: 524155
Gene Symbol: PARN
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 179456 bases
Position: chr25:13363002-13542457
Accession: 524155
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000073935	R3H	PF01424.22	4.6e-05	1	1
ENSBTAP00000070206	R3H	PF01424.22	5.4e-05	1	1
ENSBTAP00000024087	R3H	PF01424.22	5.7e-05	1	1
ENSBTAP00000064801	R3H	PF01424.22	5.8e-05	1	1
ENSBTAP00000073935	RNA_bind	PF08675.11	9.3e-33	1	1
ENSBTAP00000063197	RNA_bind	PF08675.11	9.7e-33	1	1
ENSBTAP00000024087	RNA_bind	PF08675.11	1e-32	1	1
ENSBTAP00000064801	RNA_bind	PF08675.11	1.1e-32	1	1
ENSBTAP00000070206	RNA_bind	PF08675.11	1.2e-13	1	1
ENSBTAP00000070206	CAF1	PF04857.20	1.2e-82	1	2
ENSBTAP00000070206	CAF1	PF04857.20	1.2e-82	2	2
ENSBTAP00000064801	CAF1	PF04857.20	2.4e-82	1	2
ENSBTAP00000064801	CAF1	PF04857.20	2.4e-82	2	2
ENSBTAP00000024087	CAF1	PF04857.20	4.7e-80	1	1
ENSBTAP00000063197	CAF1	PF04857.20	3.2e-76	1	1
ENSBTAP00000073935	CAF1	PF04857.20	2.6e-70	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000024087	PARN-204	3028	-	ENSBTAP00000024087	619 (aa)	-	P69341
ENSBTAT00000077864	PARN-203	3082	XM_010819307	ENSBTAP00000070206	637 (aa)	XP_010817609	UPI000572E13A
ENSBTAT00000083577	PARN-202	3157	XM_010819306	ENSBTAP00000064801	662 (aa)	XP_010817608	UPI000572D62E
ENSBTAT00000068845	PARN-205	1806	-	ENSBTAP00000063197	601 (aa)	-	-
ENSBTAT00000077501	PARN-201	3417	-	ENSBTAP00000073935	577 (aa)	XP_024840683	UPI000383EAB9

Gene Model

Click here to download ENSBTAG00000018097's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000018097's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000018097	PARN	100	93.945	ENSG00000140694	PARN	100	98.305	Homo_sapiens
ENSBTAG00000018097	PARN	100	93.945	ENSAMEG00000011208	PARN	100	91.393	Ailuropoda_melanoleuca
ENSBTAG00000018097	PARN	85	72.655	ENSACIG00000000619	parn	87	70.285	Amphilophus_citrinellus
ENSBTAG00000018097	PARN	81	78.224	ENSAOCG00000003465	parn	78	74.906	Amphiprion_ocellaris
ENSBTAG00000018097	PARN	81	77.801	ENSAPEG00000010661	parn	91	77.801	Amphiprion_percula
ENSBTAG00000018097	PARN	89	74.521	ENSATEG00000004661	parn	83	71.698	Anabas_testudineus
ENSBTAG00000018097	PARN	100	83.362	ENSAPLG00000013914	PARN	99	80.727	Anas_platyrhynchos
ENSBTAG00000018097	PARN	89	83.430	ENSACAG00000004973	PARN	100	75.038	Anolis_carolinensis
ENSBTAG00000018097	PARN	100	92.042	ENSANAG00000031516	PARN	100	98.305	Aotus_nancymaae
ENSBTAG00000018097	PARN	90	73.996	ENSACLG00000004742	parn	84	71.404	Astatotilapia_calliptera
ENSBTAG00000018097	PARN	100	66.610	ENSAMXG00000012390	parn	100	65.630	Astyanax_mexicanus
ENSBTAG00000018097	PARN	100	92.734	ENSCJAG00000015866	PARN	100	98.305	Callithrix_jacchus
ENSBTAG00000018097	PARN	100	94.454	ENSCAFG00000018795	PARN	100	91.693	Canis_familiaris
ENSBTAG00000018097	PARN	100	94.281	ENSCAFG00020024126	PARN	100	91.693	Canis_lupus_dingo
ENSBTAG00000018097	PARN	100	99.307	ENSCHIG00000018143	PARN	100	96.395	Capra_hircus
ENSBTAG00000018097	PARN	76	59.920	ENSCAPG00000007984	PARN	78	62.198	Cavia_aperea
ENSBTAG00000018097	PARN	100	89.428	ENSCPOG00000002263	PARN	100	87.147	Cavia_porcellus
ENSBTAG00000018097	PARN	100	92.907	ENSCCAG00000030367	PARN	100	98.305	Cebus_capucinus
ENSBTAG00000018097	PARN	100	82.915	ENSCATG00000041368	PARN	100	98.305	Cercocebus_atys
ENSBTAG00000018097	PARN	100	90.121	ENSCLAG00000015406	PARN	99	87.618	Chinchilla_lanigera
ENSBTAG00000018097	PARN	100	93.772	ENSCSAG00000008142	PARN	100	91.236	Chlorocebus_sabaeus
ENSBTAG00000018097	PARN	99	76.704	ENSCHOG00000007014	PARN	100	76.704	Choloepus_hoffmanni
ENSBTAG00000018097	PARN	97	85.027	ENSCPBG00000006609	PARN	97	85.289	Chrysemys_picta_bellii
ENSBTAG00000018097	PARN	81	42.011	ENSCING00000010142	-	99	42.589	Ciona_intestinalis
ENSBTAG00000018097	PARN	100	80.711	ENSCANG00000028849	-	100	98.305	Colobus_angolensis_palliatus
ENSBTAG00000018097	PARN	100	83.966	ENSCGRG00001012096	Parn	100	82.371	Cricetulus_griseus_chok1gshd
ENSBTAG00000018097	PARN	61	35.000	ENSCGRG00001011981	-	75	35.000	Cricetulus_griseus_chok1gshd
ENSBTAG00000018097	PARN	100	83.966	ENSCGRG00000004939	Parn	100	82.371	Cricetulus_griseus_crigri
ENSBTAG00000018097	PARN	95	67.870	ENSCSEG00000002064	parn	100	63.348	Cynoglossus_semilaevis
ENSBTAG00000018097	PARN	90	72.901	ENSCVAG00000014848	parn	83	70.598	Cyprinodon_variegatus
ENSBTAG00000018097	PARN	90	69.847	ENSDARG00000102634	parn	100	71.910	Danio_rerio
ENSBTAG00000018097	PARN	100	92.721	ENSDNOG00000000833	PARN	100	90.596	Dasypus_novemcinctus
ENSBTAG00000018097	PARN	76	93.916	ENSETEG00000014828	-	78	93.916	Echinops_telfairi
ENSBTAG00000018097	PARN	55	43.478	ENSEBUG00000007052	PARN	100	43.094	Eptatretus_burgeri
ENSBTAG00000018097	PARN	100	94.454	ENSEASG00005011400	PARN	100	92.006	Equus_asinus_asinus
ENSBTAG00000018097	PARN	100	94.454	ENSECAG00000017792	PARN	100	91.850	Equus_caballus
ENSBTAG00000018097	PARN	89	84.163	ENSEEUG00000010370	PARN	86	84.163	Erinaceus_europaeus
ENSBTAG00000018097	PARN	95	68.829	ENSELUG00000013139	parn	75	69.640	Esox_lucius
ENSBTAG00000018097	PARN	100	94.627	ENSFCAG00000044961	PARN	100	98.305	Felis_catus
ENSBTAG00000018097	PARN	100	82.496	ENSFALG00000003911	PARN	98	80.190	Ficedula_albicollis
ENSBTAG00000018097	PARN	57	30.769	ENSFALG00000012081	PNLDC1	70	30.263	Ficedula_albicollis
ENSBTAG00000018097	PARN	100	89.948	ENSFDAG00000009234	PARN	100	87.618	Fukomys_damarensis
ENSBTAG00000018097	PARN	91	65.472	ENSFHEG00000013738	parn	92	76.271	Fundulus_heteroclitus
ENSBTAG00000018097	PARN	84	74.490	ENSGMOG00000003231	parn	99	71.826	Gadus_morhua
ENSBTAG00000018097	PARN	100	80.517	ENSGALG00000003091	PARN	100	78.627	Gallus_gallus
ENSBTAG00000018097	PARN	89	72.658	ENSGAFG00000011061	parn	84	70.034	Gambusia_affinis
ENSBTAG00000018097	PARN	100	67.581	ENSGACG00000019501	parn	100	65.719	Gasterosteus_aculeatus
ENSBTAG00000018097	PARN	61	76.487	ENSGAGG00000023281	PARN	83	79.448	Gopherus_agassizii
ENSBTAG00000018097	PARN	97	94.107	ENSGGOG00000025224	PARN	100	98.305	Gorilla_gorilla
ENSBTAG00000018097	PARN	90	73.805	ENSHBUG00000017906	parn	90	73.743	Haplochromis_burtoni
ENSBTAG00000018097	PARN	100	89.775	ENSHGLG00000010886	PARN	100	87.461	Heterocephalus_glaber_female
ENSBTAG00000018097	PARN	100	89.775	ENSHGLG00100014659	PARN	100	87.461	Heterocephalus_glaber_male
ENSBTAG00000018097	PARN	84	69.892	ENSHCOG00000008683	parn	91	71.537	Hippocampus_comes
ENSBTAG00000018097	PARN	92	58.900	ENSIPUG00000012401	parn	87	58.900	Ictalurus_punctatus
ENSBTAG00000018097	PARN	100	91.334	ENSSTOG00000007519	PARN	100	89.028	Ictidomys_tridecemlineatus
ENSBTAG00000018097	PARN	100	87.868	ENSJJAG00000023049	Parn	100	86.207	Jaculus_jaculus
ENSBTAG00000018097	PARN	90	73.423	ENSKMAG00000009462	parn	83	70.724	Kryptolebias_marmoratus
ENSBTAG00000018097	PARN	91	70.841	ENSLBEG00000009167	parn	90	68.710	Labrus_bergylta
ENSBTAG00000018097	PARN	77	81.655	ENSLACG00000004207	PARN	100	73.585	Latimeria_chalumnae
ENSBTAG00000018097	PARN	91	74.383	ENSLOCG00000000715	parn	85	72.109	Lepisosteus_oculatus
ENSBTAG00000018097	PARN	100	92.201	ENSLAFG00000015036	PARN	100	90.125	Loxodonta_africana
ENSBTAG00000018097	PARN	100	93.599	ENSMFAG00000044852	PARN	100	98.305	Macaca_fascicularis
ENSBTAG00000018097	PARN	100	93.426	ENSMMUG00000018849	PARN	100	98.305	Macaca_mulatta
ENSBTAG00000018097	PARN	100	93.599	ENSMNEG00000045108	PARN	100	98.305	Macaca_nemestrina
ENSBTAG00000018097	PARN	100	93.426	ENSMLEG00000031743	PARN	100	98.305	Mandrillus_leucophaeus
ENSBTAG00000018097	PARN	81	77.684	ENSMAMG00000006939	parn	78	74.440	Mastacembelus_armatus
ENSBTAG00000018097	PARN	90	73.805	ENSMZEG00005013590	parn	95	70.202	Maylandia_zebra
ENSBTAG00000018097	PARN	100	80.690	ENSMGAG00000001004	PARN	95	78.560	Meleagris_gallopavo
ENSBTAG00000018097	PARN	100	81.463	ENSMAUG00000008025	Parn	100	77.895	Mesocricetus_auratus
ENSBTAG00000018097	PARN	100	93.588	ENSMICG00000016053	PARN	100	100.000	Microcebus_murinus
ENSBTAG00000018097	PARN	75	90.531	ENSMOCG00000022211	Parn	100	87.449	Microtus_ochrogaster
ENSBTAG00000018097	PARN	100	65.232	ENSMMOG00000011333	parn	87	72.710	Mola_mola
ENSBTAG00000018097	PARN	75	94.919	ENSMODG00000004915	PARN	99	90.524	Monodelphis_domestica
ENSBTAG00000018097	PARN	89	73.704	ENSMALG00000019426	parn	93	74.229	Monopterus_albus
ENSBTAG00000018097	PARN	100	85.095	MGP_CAROLIEiJ_G0020466	Parn	100	83.229	Mus_caroli
ENSBTAG00000018097	PARN	100	85.095	ENSMUSG00000022685	Parn	100	93.902	Mus_musculus
ENSBTAG00000018097	PARN	100	84.749	MGP_PahariEiJ_G0016172	Parn	100	83.072	Mus_pahari
ENSBTAG00000018097	PARN	100	84.922	MGP_SPRETEiJ_G0021361	Parn	100	83.229	Mus_spretus
ENSBTAG00000018097	PARN	100	93.934	ENSMPUG00000014464	PARN	100	91.536	Mustela_putorius_furo
ENSBTAG00000018097	PARN	75	94.688	ENSMLUG00000005414	PARN	100	91.093	Myotis_lucifugus
ENSBTAG00000018097	PARN	89	71.622	ENSNBRG00000006805	parn	98	69.320	Neolamprologus_brichardi
ENSBTAG00000018097	PARN	100	93.772	ENSNLEG00000010241	PARN	100	98.305	Nomascus_leucogenys
ENSBTAG00000018097	PARN	100	59.272	ENSMEUG00000008178	-	100	60.000	Notamacropus_eugenii
ENSBTAG00000018097	PARN	100	84.749	ENSOPRG00000012187	PARN	98	85.507	Ochotona_princeps
ENSBTAG00000018097	PARN	100	80.345	ENSODEG00000001617	PARN	100	79.456	Octodon_degus
ENSBTAG00000018097	PARN	100	68.654	ENSONIG00000000151	parn	100	66.964	Oreochromis_niloticus
ENSBTAG00000018097	PARN	66	83.158	ENSOANG00000020155	-	97	83.421	Ornithorhynchus_anatinus
ENSBTAG00000018097	PARN	100	90.815	ENSOCUG00000000322	PARN	100	88.031	Oryctolagus_cuniculus
ENSBTAG00000018097	PARN	95	67.981	ENSORLG00020010313	parn	88	67.981	Oryzias_latipes_hni
ENSBTAG00000018097	PARN	95	67.823	ENSORLG00015000300	parn	88	67.823	Oryzias_latipes_hsok
ENSBTAG00000018097	PARN	90	72.467	ENSOMEG00000019555	parn	97	66.968	Oryzias_melastigma
ENSBTAG00000018097	PARN	75	93.519	ENSOGAG00000014626	PARN	100	89.899	Otolemur_garnettii
ENSBTAG00000018097	PARN	75	99.538	ENSOARG00000007574	PARN	100	95.749	Ovis_aries
ENSBTAG00000018097	PARN	100	93.599	ENSPPAG00000031438	PARN	100	98.305	Pan_paniscus
ENSBTAG00000018097	PARN	100	94.454	ENSPPRG00000018583	PARN	100	98.305	Panthera_pardus
ENSBTAG00000018097	PARN	100	94.627	ENSPTIG00000012135	PARN	100	98.305	Panthera_tigris_altaica
ENSBTAG00000018097	PARN	100	93.599	ENSPTRG00000007792	PARN	100	98.305	Pan_troglodytes
ENSBTAG00000018097	PARN	100	90.138	ENSPANG00000020099	PARN	100	98.305	Papio_anubis
ENSBTAG00000018097	PARN	90	73.359	ENSPKIG00000022807	parn	91	67.007	Paramormyrops_kingsleyae
ENSBTAG00000018097	PARN	100	84.055	ENSPSIG00000014804	PARN	100	84.055	Pelodiscus_sinensis
ENSBTAG00000018097	PARN	78	76.821	ENSPMGG00000014431	parn	74	73.321	Periophthalmus_magnuspinnatus
ENSBTAG00000018097	PARN	100	85.460	ENSPEMG00000018439	Parn	100	85.460	Peromyscus_maniculatus_bairdii
ENSBTAG00000018097	PARN	79	69.130	ENSPMAG00000003956	parn	98	65.891	Petromyzon_marinus
ENSBTAG00000018097	PARN	65	90.617	ENSPCIG00000001259	PARN	91	93.220	Phascolarctos_cinereus
ENSBTAG00000018097	PARN	89	72.937	ENSPFOG00000012823	parn	84	70.270	Poecilia_formosa
ENSBTAG00000018097	PARN	89	73.129	ENSPLAG00000006395	parn	84	70.270	Poecilia_latipinna
ENSBTAG00000018097	PARN	89	73.129	ENSPMEG00000007711	parn	84	70.270	Poecilia_mexicana
ENSBTAG00000018097	PARN	89	72.745	ENSPREG00000000147	parn	84	69.764	Poecilia_reticulata
ENSBTAG00000018097	PARN	100	93.599	ENSPPYG00000007123	PARN	100	90.640	Pongo_abelii
ENSBTAG00000018097	PARN	100	82.322	ENSPCAG00000001741	PARN	100	83.140	Procavia_capensis
ENSBTAG00000018097	PARN	100	90.641	ENSPCOG00000019292	PARN	100	100.000	Propithecus_coquereli
ENSBTAG00000018097	PARN	100	90.121	ENSPVAG00000002547	PARN	100	88.254	Pteropus_vampyrus
ENSBTAG00000018097	PARN	90	73.805	ENSPNYG00000006835	parn	95	71.150	Pundamilia_nyererei
ENSBTAG00000018097	PARN	89	74.414	ENSPNAG00000018905	parn	82	74.414	Pygocentrus_nattereri
ENSBTAG00000018097	PARN	100	82.353	ENSRNOG00000002912	Parn	98	87.879	Rattus_norvegicus
ENSBTAG00000018097	PARN	58	90.090	ENSRBIG00000018726	PARN	100	90.090	Rhinopithecus_bieti
ENSBTAG00000018097	PARN	58	90.090	ENSRROG00000011162	-	100	90.090	Rhinopithecus_roxellana
ENSBTAG00000018097	PARN	100	91.176	ENSSBOG00000034726	PARN	100	98.305	Saimiri_boliviensis_boliviensis
ENSBTAG00000018097	PARN	69	88.462	ENSSHAG00000008493	PARN	94	88.995	Sarcophilus_harrisii
ENSBTAG00000018097	PARN	95	70.962	ENSSFOG00015014165	parn	88	74.388	Scleropages_formosus
ENSBTAG00000018097	PARN	81	76.421	ENSSMAG00000000685	parn	100	60.534	Scophthalmus_maximus
ENSBTAG00000018097	PARN	89	72.467	ENSSDUG00000014555	parn	83	69.901	Seriola_dumerili
ENSBTAG00000018097	PARN	100	80.763	ENSSARG00000014339	PARN	99	80.763	Sorex_araneus
ENSBTAG00000018097	PARN	100	84.055	ENSSPUG00000007719	PARN	100	81.505	Sphenodon_punctatus
ENSBTAG00000018097	PARN	90	73.295	ENSSPAG00000007095	parn	86	70.974	Stegastes_partitus
ENSBTAG00000018097	PARN	100	93.761	ENSSSCG00000007878	PARN	89	91.536	Sus_scrofa
ENSBTAG00000018097	PARN	58	30.702	ENSTGUG00000011418	PNLDC1	68	30.362	Taeniopygia_guttata
ENSBTAG00000018097	PARN	100	82.149	ENSTGUG00000004971	PARN	99	79.621	Taeniopygia_guttata
ENSBTAG00000018097	PARN	100	67.179	ENSTNIG00000008252	parn	100	65.970	Tetraodon_nigroviridis
ENSBTAG00000018097	PARN	100	79.203	ENSTBEG00000010407	PARN	99	79.203	Tupaia_belangeri
ENSBTAG00000018097	PARN	100	90.988	ENSTTRG00000002843	PARN	100	88.748	Tursiops_truncatus
ENSBTAG00000018097	PARN	75	83.945	ENSUAMG00000008283	PARN	94	80.049	Ursus_americanus
ENSBTAG00000018097	PARN	100	94.281	ENSUMAG00000004527	PARN	100	91.850	Ursus_maritimus
ENSBTAG00000018097	PARN	97	90.893	ENSVPAG00000008968	PARN	100	91.694	Vicugna_pacos
ENSBTAG00000018097	PARN	100	94.801	ENSVVUG00000019509	PARN	100	92.163	Vulpes_vulpes
ENSBTAG00000018097	PARN	100	74.350	ENSXETG00000010994	parn	100	80.608	Xenopus_tropicalis
ENSBTAG00000018097	PARN	89	68.582	ENSXCOG00000015990	parn	96	66.288	Xiphophorus_couchianus
ENSBTAG00000018097	PARN	91	71.857	ENSXMAG00000014783	parn	84	69.865	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000495	box H/ACA snoRNA 3'-end processing	-	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISS	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0010587	miRNA catabolic process	-	ISS	Process
GO:0043169	cation binding	-	ISS	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	-	ISS	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process