EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000018658 (Gene tree)
Gene ID: 504217
Gene Symbol: TNRC6C
Alias: -
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 72615 bases
Position: chr19:54051772-54124386
Accession: 36206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000058691	Ago_hook	PF10427.9	3.1e-22	1	1
ENSBTAP00000063742	Ago_hook	PF10427.9	3.3e-22	1	1
ENSBTAP00000053234	Ago_hook	PF10427.9	4.3e-22	1	1
ENSBTAP00000067592	Ago_hook	PF10427.9	1.1e-10	1	1
ENSBTAP00000063742	RRM_1	PF00076.22	3.2e-05	1	1
ENSBTAP00000058691	RRM_1	PF00076.22	3.3e-05	1	1
ENSBTAP00000067592	RRM_1	PF00076.22	3.5e-05	1	1
ENSBTAP00000053234	RRM_1	PF00076.22	3.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000081636	-	5778	XM_024981022	ENSBTAP00000063742	1685 (aa)	XP_024836790	UPI00017C38A7
ENSBTAT00000061369	-	5796	XM_010816590	ENSBTAP00000053234	1931 (aa)	XP_010814892	F1MLT5
ENSBTAT00000077012	-	5580	-	ENSBTAP00000067592	1859 (aa)	-	-
ENSBTAT00000086721	-	5895	-	ENSBTAP00000058691	1724 (aa)	-	UPI0001D5698A

Gene Model

Click here to download ENSBTAG00000018658's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000018658's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000018658	TNRC6C	99	42.732	ENSBTAG00000017999	TNRC6A	95	48.603
ENSBTAG00000018658	TNRC6C	96	39.935	ENSBTAG00000021076	TNRC6B	98	38.081

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000018658	TNRC6C	100	88.305	ENSG00000078687	TNRC6C	100	88.069	Homo_sapiens
ENSBTAG00000018658	TNRC6C	96	52.352	ENSAPOG00000019749	tnrc6c1	98	48.281	Acanthochromis_polyacanthus
ENSBTAG00000018658	TNRC6C	100	87.622	ENSAMEG00000013756	TNRC6C	99	87.260	Ailuropoda_melanoleuca
ENSBTAG00000018658	TNRC6C	89	53.067	ENSACIG00000008075	tnrc6c1	97	53.060	Amphilophus_citrinellus
ENSBTAG00000018658	TNRC6C	85	67.412	ENSAOCG00000023968	tnrc6c1	99	44.180	Amphiprion_ocellaris
ENSBTAG00000018658	TNRC6C	89	54.082	ENSAPEG00000009020	tnrc6c1	99	47.495	Amphiprion_percula
ENSBTAG00000018658	TNRC6C	100	83.963	ENSAPLG00000005456	TNRC6C	100	83.247	Anas_platyrhynchos
ENSBTAG00000018658	TNRC6C	100	84.268	ENSACAG00000016198	TNRC6C	99	82.386	Anolis_carolinensis
ENSBTAG00000018658	TNRC6C	100	87.596	ENSANAG00000021554	TNRC6C	100	87.596	Aotus_nancymaae
ENSBTAG00000018658	TNRC6C	100	48.895	ENSACLG00000000424	tnrc6c1	97	52.159	Astatotilapia_calliptera
ENSBTAG00000018658	TNRC6C	100	87.596	ENSCJAG00000019431	TNRC6C	100	87.183	Callithrix_jacchus
ENSBTAG00000018658	TNRC6C	100	89.577	ENSCAFG00000005224	TNRC6C	96	92.193	Canis_familiaris
ENSBTAG00000018658	TNRC6C	100	89.505	ENSCAFG00020006661	TNRC6C	100	88.803	Canis_lupus_dingo
ENSBTAG00000018658	TNRC6C	100	97.507	ENSCHIG00000026004	TNRC6C	100	98.947	Capra_hircus
ENSBTAG00000018658	TNRC6C	100	88.831	ENSTSYG00000005403	TNRC6C	97	91.867	Carlito_syrichta
ENSBTAG00000018658	TNRC6C	100	81.401	ENSCAPG00000007307	TNRC6C	99	79.969	Cavia_aperea
ENSBTAG00000018658	TNRC6C	100	86.738	ENSCPOG00000000467	TNRC6C	100	84.702	Cavia_porcellus
ENSBTAG00000018658	TNRC6C	100	88.128	ENSCCAG00000030524	TNRC6C	100	87.832	Cebus_capucinus
ENSBTAG00000018658	TNRC6C	100	88.187	ENSCATG00000033135	TNRC6C	97	90.961	Cercocebus_atys
ENSBTAG00000018658	TNRC6C	100	88.336	ENSCLAG00000011139	TNRC6C	99	85.662	Chinchilla_lanigera
ENSBTAG00000018658	TNRC6C	100	87.970	ENSCSAG00000005167	TNRC6C	96	90.847	Chlorocebus_sabaeus
ENSBTAG00000018658	TNRC6C	71	90.415	ENSCHOG00000000088	TNRC6C	75	86.555	Choloepus_hoffmanni
ENSBTAG00000018658	TNRC6C	100	85.098	ENSCPBG00000027960	TNRC6C	100	84.743	Chrysemys_picta_bellii
ENSBTAG00000018658	TNRC6C	100	88.009	ENSCANG00000041771	TNRC6C	97	90.961	Colobus_angolensis_palliatus
ENSBTAG00000018658	TNRC6C	100	86.808	ENSCGRG00001022686	Tnrc6c	100	85.571	Cricetulus_griseus_chok1gshd
ENSBTAG00000018658	TNRC6C	100	87.219	ENSCGRG00000018041	Tnrc6c	100	85.571	Cricetulus_griseus_crigri
ENSBTAG00000018658	TNRC6C	80	53.472	ENSCSEG00000012744	tnrc6c1	98	46.089	Cynoglossus_semilaevis
ENSBTAG00000018658	TNRC6C	94	55.482	ENSDARG00000076847	tnrc6c1	84	58.457	Danio_rerio
ENSBTAG00000018658	TNRC6C	100	86.979	ENSDNOG00000003247	TNRC6C	96	89.885	Dasypus_novemcinctus
ENSBTAG00000018658	TNRC6C	100	84.158	ENSDORG00000004558	Tnrc6c	100	83.451	Dipodomys_ordii
ENSBTAG00000018658	TNRC6C	90	81.636	ENSETEG00000005527	TNRC6C	90	78.367	Echinops_telfairi
ENSBTAG00000018658	TNRC6C	100	90.101	ENSEASG00005004799	TNRC6C	100	90.101	Equus_asinus_asinus
ENSBTAG00000018658	TNRC6C	99	93.582	ENSECAG00000012486	TNRC6C	97	93.387	Equus_caballus
ENSBTAG00000018658	TNRC6C	96	87.177	ENSEEUG00000010008	TNRC6C	96	86.464	Erinaceus_europaeus
ENSBTAG00000018658	TNRC6C	100	88.955	ENSFCAG00000028358	TNRC6C	100	88.423	Felis_catus
ENSBTAG00000018658	TNRC6C	100	83.503	ENSFALG00000000848	TNRC6C	100	82.653	Ficedula_albicollis
ENSBTAG00000018658	TNRC6C	100	88.396	ENSFDAG00000010368	TNRC6C	100	85.827	Fukomys_damarensis
ENSBTAG00000018658	TNRC6C	99	44.998	ENSFHEG00000002936	tnrc6c1	99	53.010	Fundulus_heteroclitus
ENSBTAG00000018658	TNRC6C	100	85.486	ENSGALG00000001725	TNRC6C	96	89.327	Gallus_gallus
ENSBTAG00000018658	TNRC6C	100	49.485	ENSGAFG00000019019	tnrc6c1	97	49.089	Gambusia_affinis
ENSBTAG00000018658	TNRC6C	97	46.000	ENSGACG00000012320	tnrc6c1	97	46.247	Gasterosteus_aculeatus
ENSBTAG00000018658	TNRC6C	100	84.870	ENSGAGG00000022043	TNRC6C	96	89.675	Gopherus_agassizii
ENSBTAG00000018658	TNRC6C	100	87.544	ENSGGOG00000011304	TNRC6C	97	90.514	Gorilla_gorilla
ENSBTAG00000018658	TNRC6C	94	50.030	ENSHBUG00000010846	tnrc6c1	97	52.490	Haplochromis_burtoni
ENSBTAG00000018658	TNRC6C	100	88.396	ENSHGLG00000004809	TNRC6C	99	85.670	Heterocephalus_glaber_female
ENSBTAG00000018658	TNRC6C	100	87.390	ENSHGLG00100012597	TNRC6C	99	85.314	Heterocephalus_glaber_male
ENSBTAG00000018658	TNRC6C	99	51.185	ENSIPUG00000000818	tnrc6c1	98	50.554	Ictalurus_punctatus
ENSBTAG00000018658	TNRC6C	100	87.411	ENSSTOG00000009101	TNRC6C	100	84.840	Ictidomys_tridecemlineatus
ENSBTAG00000018658	TNRC6C	100	86.042	ENSJJAG00000017055	Tnrc6c	99	83.100	Jaculus_jaculus
ENSBTAG00000018658	TNRC6C	97	47.751	ENSKMAG00000021023	tnrc6c1	96	56.814	Kryptolebias_marmoratus
ENSBTAG00000018658	TNRC6C	100	73.036	ENSLACG00000015283	TNRC6C	100	71.373	Latimeria_chalumnae
ENSBTAG00000018658	TNRC6C	97	57.895	ENSLOCG00000013377	tnrc6c1	99	55.100	Lepisosteus_oculatus
ENSBTAG00000018658	TNRC6C	100	88.378	ENSLAFG00000011122	TNRC6C	100	86.279	Loxodonta_africana
ENSBTAG00000018658	TNRC6C	100	88.246	ENSMFAG00000043943	TNRC6C	97	90.961	Macaca_fascicularis
ENSBTAG00000018658	TNRC6C	100	88.246	ENSMMUG00000011924	TNRC6C	100	87.950	Macaca_mulatta
ENSBTAG00000018658	TNRC6C	100	88.246	ENSMNEG00000030405	TNRC6C	100	87.950	Macaca_nemestrina
ENSBTAG00000018658	TNRC6C	100	88.246	ENSMLEG00000033436	TNRC6C	97	90.961	Mandrillus_leucophaeus
ENSBTAG00000018658	TNRC6C	88	54.621	ENSMAMG00000023613	tnrc6c1	97	50.661	Mastacembelus_armatus
ENSBTAG00000018658	TNRC6C	100	48.895	ENSMZEG00005010920	tnrc6c1	97	52.159	Maylandia_zebra
ENSBTAG00000018658	TNRC6C	100	77.104	ENSMGAG00000003906	TNRC6C	96	82.637	Meleagris_gallopavo
ENSBTAG00000018658	TNRC6C	100	86.337	ENSMAUG00000021618	Tnrc6c	100	85.807	Mesocricetus_auratus
ENSBTAG00000018658	TNRC6C	100	89.604	ENSMICG00000003952	TNRC6C	100	89.309	Microcebus_murinus
ENSBTAG00000018658	TNRC6C	100	87.929	ENSMOCG00000015879	Tnrc6c	100	85.554	Microtus_ochrogaster
ENSBTAG00000018658	TNRC6C	79	55.180	ENSMMOG00000005203	tnrc6c1	83	53.324	Mola_mola
ENSBTAG00000018658	TNRC6C	100	83.637	ENSMODG00000001785	TNRC6C	96	84.598	Monodelphis_domestica
ENSBTAG00000018658	TNRC6C	100	88.284	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	85.722	Mus_caroli
ENSBTAG00000018658	TNRC6C	100	87.811	ENSMUSG00000025571	Tnrc6c	100	85.273	Mus_musculus
ENSBTAG00000018658	TNRC6C	100	88.225	MGP_PahariEiJ_G0018593	Tnrc6c	100	85.722	Mus_pahari
ENSBTAG00000018658	TNRC6C	100	87.870	MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.329	Mus_spretus
ENSBTAG00000018658	TNRC6C	99	92.640	ENSMPUG00000013348	TNRC6C	95	91.734	Mustela_putorius_furo
ENSBTAG00000018658	TNRC6C	100	83.219	ENSMLUG00000014431	TNRC6C	98	82.620	Myotis_lucifugus
ENSBTAG00000018658	TNRC6C	100	86.977	ENSNGAG00000012203	Tnrc6c	99	84.787	Nannospalax_galili
ENSBTAG00000018658	TNRC6C	100	49.666	ENSNBRG00000005344	tnrc6c1	97	53.047	Neolamprologus_brichardi
ENSBTAG00000018658	TNRC6C	100	85.377	ENSNLEG00000000047	TNRC6C	99	84.647	Nomascus_leucogenys
ENSBTAG00000018658	TNRC6C	97	77.603	ENSMEUG00000005104	TNRC6C	100	75.416	Notamacropus_eugenii
ENSBTAG00000018658	TNRC6C	100	88.099	ENSODEG00000012499	TNRC6C	100	87.567	Octodon_degus
ENSBTAG00000018658	TNRC6C	94	51.335	ENSONIG00000002210	tnrc6c1	95	53.922	Oreochromis_niloticus
ENSBTAG00000018658	TNRC6C	99	63.078	ENSOANG00000009758	-	97	80.499	Ornithorhynchus_anatinus
ENSBTAG00000018658	TNRC6C	83	80.426	ENSOCUG00000006122	TNRC6C	95	80.362	Oryctolagus_cuniculus
ENSBTAG00000018658	TNRC6C	91	50.305	ENSORLG00000009837	tnrc6c1	100	67.658	Oryzias_latipes
ENSBTAG00000018658	TNRC6C	92	49.940	ENSORLG00020016510	tnrc6c1	99	46.062	Oryzias_latipes_hni
ENSBTAG00000018658	TNRC6C	72	45.106	ENSORLG00015000171	tnrc6c1	87	61.111	Oryzias_latipes_hsok
ENSBTAG00000018658	TNRC6C	92	50.478	ENSOMEG00000000357	tnrc6c1	91	64.031	Oryzias_melastigma
ENSBTAG00000018658	TNRC6C	100	87.269	ENSOGAG00000007197	TNRC6C	100	87.037	Otolemur_garnettii
ENSBTAG00000018658	TNRC6C	96	94.485	ENSOARG00000006041	TNRC6C	98	94.837	Ovis_aries
ENSBTAG00000018658	TNRC6C	100	88.187	ENSPPAG00000027160	TNRC6C	100	87.891	Pan_paniscus
ENSBTAG00000018658	TNRC6C	100	89.132	ENSPPRG00000018881	TNRC6C	100	88.600	Panthera_pardus
ENSBTAG00000018658	TNRC6C	90	82.096	ENSPTIG00000008791	TNRC6C	90	82.703	Panthera_tigris_altaica
ENSBTAG00000018658	TNRC6C	100	88.187	ENSPTRG00000009699	TNRC6C	100	87.891	Pan_troglodytes
ENSBTAG00000018658	TNRC6C	100	88.402	ENSPANG00000019994	TNRC6C	100	88.107	Papio_anubis
ENSBTAG00000018658	TNRC6C	59	63.868	ENSPKIG00000005428	tnrc6c1	98	51.200	Paramormyrops_kingsleyae
ENSBTAG00000018658	TNRC6C	100	83.156	ENSPSIG00000018069	TNRC6C	97	86.195	Pelodiscus_sinensis
ENSBTAG00000018658	TNRC6C	80	56.660	ENSPMGG00000022911	tnrc6c1	97	64.082	Periophthalmus_magnuspinnatus
ENSBTAG00000018658	TNRC6C	100	87.397	ENSPEMG00000009785	Tnrc6c	99	84.847	Peromyscus_maniculatus_bairdii
ENSBTAG00000018658	TNRC6C	58	80.718	ENSPCIG00000017421	-	94	87.850	Phascolarctos_cinereus
ENSBTAG00000018658	TNRC6C	100	49.640	ENSPFOG00000012560	tnrc6c1	93	58.934	Poecilia_formosa
ENSBTAG00000018658	TNRC6C	100	49.972	ENSPLAG00000021055	tnrc6c1	94	59.487	Poecilia_latipinna
ENSBTAG00000018658	TNRC6C	100	88.548	ENSPPYG00000008679	TNRC6C	98	88.275	Pongo_abelii
ENSBTAG00000018658	TNRC6C	93	91.943	ENSPCAG00000012510	TNRC6C	90	90.129	Procavia_capensis
ENSBTAG00000018658	TNRC6C	100	89.722	ENSPCOG00000021451	TNRC6C	100	89.427	Propithecus_coquereli
ENSBTAG00000018658	TNRC6C	96	92.373	ENSPVAG00000002008	TNRC6C	95	92.373	Pteropus_vampyrus
ENSBTAG00000018658	TNRC6C	100	48.503	ENSPNYG00000014477	tnrc6c1	97	51.655	Pundamilia_nyererei
ENSBTAG00000018658	TNRC6C	100	87.648	ENSRNOG00000022395	Tnrc6c	100	86.879	Rattus_norvegicus
ENSBTAG00000018658	TNRC6C	100	88.128	ENSRBIG00000027777	TNRC6C	97	91.076	Rhinopithecus_bieti
ENSBTAG00000018658	TNRC6C	100	88.187	ENSRROG00000042912	TNRC6C	97	91.076	Rhinopithecus_roxellana
ENSBTAG00000018658	TNRC6C	100	87.681	ENSSBOG00000023981	TNRC6C	97	90.503	Saimiri_boliviensis_boliviensis
ENSBTAG00000018658	TNRC6C	53	88.745	ENSSHAG00000018330	-	100	88.528	Sarcophilus_harrisii
ENSBTAG00000018658	TNRC6C	83	47.810	ENSSFOG00015004735	-	99	62.565	Scleropages_formosus
ENSBTAG00000018658	TNRC6C	93	57.536	ENSSFOG00015006475	tnrc6c1	89	52.129	Scleropages_formosus
ENSBTAG00000018658	TNRC6C	100	48.455	ENSSMAG00000012761	tnrc6c1	84	52.817	Scophthalmus_maximus
ENSBTAG00000018658	TNRC6C	100	50.171	ENSSDUG00000002366	tnrc6c1	94	58.800	Seriola_dumerili
ENSBTAG00000018658	TNRC6C	100	48.668	ENSSLDG00000025613	tnrc6c1	92	58.596	Seriola_lalandi_dorsalis
ENSBTAG00000018658	TNRC6C	91	93.277	ENSSARG00000006816	TNRC6C	91	93.277	Sorex_araneus
ENSBTAG00000018658	TNRC6C	83	83.380	ENSSPUG00000007341	TNRC6C	99	82.687	Sphenodon_punctatus
ENSBTAG00000018658	TNRC6C	79	53.522	ENSSPAG00000014977	tnrc6c1	92	60.146	Stegastes_partitus
ENSBTAG00000018658	TNRC6C	96	92.575	ENSSSCG00000034373	TNRC6C	100	92.649	Sus_scrofa
ENSBTAG00000018658	TNRC6C	100	85.343	ENSTGUG00000007733	TNRC6C	100	83.212	Taeniopygia_guttata
ENSBTAG00000018658	TNRC6C	87	51.854	ENSTRUG00000011685	tnrc6c1	82	54.046	Takifugu_rubripes
ENSBTAG00000018658	TNRC6C	95	54.271	ENSTNIG00000005273	tnrc6c1	100	61.014	Tetraodon_nigroviridis
ENSBTAG00000018658	TNRC6C	64	89.453	ENSTBEG00000005046	TNRC6C	95	89.453	Tupaia_belangeri
ENSBTAG00000018658	TNRC6C	100	92.836	ENSTTRG00000010828	TNRC6C	97	92.836	Tursiops_truncatus
ENSBTAG00000018658	TNRC6C	100	87.334	ENSUMAG00000013614	TNRC6C	99	86.999	Ursus_maritimus
ENSBTAG00000018658	TNRC6C	52	83.827	ENSVPAG00000006765	-	100	83.827	Vicugna_pacos
ENSBTAG00000018658	TNRC6C	100	90.284	ENSVVUG00000015268	TNRC6C	100	89.929	Vulpes_vulpes
ENSBTAG00000018658	TNRC6C	100	73.400	ENSXETG00000019470	tnrc6c	96	78.201	Xenopus_tropicalis
ENSBTAG00000018658	TNRC6C	100	50.401	ENSXMAG00000025971	tnrc6c1	97	57.384	Xiphophorus_maculatus