EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000018729 (Gene tree)
Gene ID: 513692
Gene Symbol: SPEN
Alias: -
Full Name: spen family transcriptional repressor
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 91055 bases
Position: chr16:51634020-51725074
Accession: 35204
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000024930	RRM_5	PF13893.6	6.3e-07	1	2
ENSBTAP00000024930	RRM_5	PF13893.6	6.3e-07	2	2
ENSBTAP00000053545	RRM_5	PF13893.6	6.3e-07	1	2
ENSBTAP00000053545	RRM_5	PF13893.6	6.3e-07	2	2
ENSBTAP00000024930	RRM_1	PF00076.22	3.6e-43	1	4
ENSBTAP00000024930	RRM_1	PF00076.22	3.6e-43	2	4
ENSBTAP00000024930	RRM_1	PF00076.22	3.6e-43	3	4
ENSBTAP00000024930	RRM_1	PF00076.22	3.6e-43	4	4
ENSBTAP00000053545	RRM_1	PF00076.22	3.7e-43	1	4
ENSBTAP00000053545	RRM_1	PF00076.22	3.7e-43	2	4
ENSBTAP00000053545	RRM_1	PF00076.22	3.7e-43	3	4
ENSBTAP00000053545	RRM_1	PF00076.22	3.7e-43	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000061139	-	10923	-	ENSBTAP00000053545	3640 (aa)	-	E1BNF6
ENSBTAT00000024930	-	10860	-	ENSBTAP00000024930	3619 (aa)	-	F1MRK2

Gene Model

Click here to download ENSBTAG00000018729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000018729's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000018729	SPEN	100	87.208	ENSG00000065526	SPEN	99	98.990	Homo_sapiens
ENSBTAG00000018729	SPEN	97	80.337	ENSAPOG00000009853	-	91	74.157	Acanthochromis_polyacanthus
ENSBTAG00000018729	SPEN	82	75.377	ENSAPOG00000011411	si:ch1073-335m2.2	88	75.377	Acanthochromis_polyacanthus
ENSBTAG00000018729	SPEN	100	89.174	ENSAMEG00000011817	SPEN	100	89.065	Ailuropoda_melanoleuca
ENSBTAG00000018729	SPEN	97	80.337	ENSAOCG00000014505	-	99	45.970	Amphiprion_ocellaris
ENSBTAG00000018729	SPEN	58	68.712	ENSAOCG00000008077	si:ch1073-335m2.2	64	68.712	Amphiprion_ocellaris
ENSBTAG00000018729	SPEN	97	80.337	ENSAPEG00000010288	-	99	45.989	Amphiprion_percula
ENSBTAG00000018729	SPEN	85	83.626	ENSAPEG00000013515	si:ch1073-335m2.2	87	83.626	Amphiprion_percula
ENSBTAG00000018729	SPEN	97	81.461	ENSATEG00000005627	-	99	46.242	Anabas_testudineus
ENSBTAG00000018729	SPEN	80	79.679	ENSATEG00000007674	si:ch1073-335m2.2	85	79.679	Anabas_testudineus
ENSBTAG00000018729	SPEN	97	70.765	ENSAPLG00000012618	SPEN	100	71.051	Anas_platyrhynchos
ENSBTAG00000018729	SPEN	97	63.220	ENSACAG00000013761	SPEN	100	63.663	Anolis_carolinensis
ENSBTAG00000018729	SPEN	99	86.332	ENSANAG00000034428	SPEN	99	86.308	Aotus_nancymaae
ENSBTAG00000018729	SPEN	97	80.337	ENSACLG00000016922	-	99	45.787	Astatotilapia_calliptera
ENSBTAG00000018729	SPEN	62	84.211	ENSACLG00000021433	si:ch1073-335m2.2	65	84.211	Astatotilapia_calliptera
ENSBTAG00000018729	SPEN	97	82.123	ENSAMXG00000012485	spen	99	48.379	Astyanax_mexicanus
ENSBTAG00000018729	SPEN	100	86.298	ENSCJAG00000008527	SPEN	100	86.329	Callithrix_jacchus
ENSBTAG00000018729	SPEN	88	87.238	ENSCAFG00000016132	-	98	87.230	Canis_familiaris
ENSBTAG00000018729	SPEN	100	97.318	ENSCHIG00000025070	SPEN	100	97.318	Capra_hircus
ENSBTAG00000018729	SPEN	92	85.149	ENSTSYG00000036016	SPEN	99	85.565	Carlito_syrichta
ENSBTAG00000018729	SPEN	99	79.842	ENSCAPG00000013803	SPEN	100	81.325	Cavia_aperea
ENSBTAG00000018729	SPEN	99	80.269	ENSCPOG00000014036	SPEN	100	80.735	Cavia_porcellus
ENSBTAG00000018729	SPEN	100	82.045	ENSCCAG00000020258	SPEN	99	84.841	Cebus_capucinus
ENSBTAG00000018729	SPEN	95	98.519	ENSCATG00000015079	SPEN	99	97.794	Cercocebus_atys
ENSBTAG00000018729	SPEN	99	81.617	ENSCLAG00000002018	SPEN	100	81.452	Chinchilla_lanigera
ENSBTAG00000018729	SPEN	100	87.232	ENSCSAG00000000841	SPEN	100	87.117	Chlorocebus_sabaeus
ENSBTAG00000018729	SPEN	97	71.497	ENSCPBG00000010477	SPEN	100	71.904	Chrysemys_picta_bellii
ENSBTAG00000018729	SPEN	99	85.412	ENSCANG00000034547	SPEN	99	85.594	Colobus_angolensis_palliatus
ENSBTAG00000018729	SPEN	99	80.262	ENSCGRG00001007725	Spen	100	80.016	Cricetulus_griseus_chok1gshd
ENSBTAG00000018729	SPEN	99	79.549	ENSCGRG00000010581	Spen	100	79.137	Cricetulus_griseus_crigri
ENSBTAG00000018729	SPEN	96	83.146	ENSCSEG00000003915	-	99	46.354	Cynoglossus_semilaevis
ENSBTAG00000018729	SPEN	97	44.910	ENSCVAG00000016346	-	99	45.344	Cyprinodon_variegatus
ENSBTAG00000018729	SPEN	65	61.111	ENSCVAG00000009075	si:ch1073-335m2.2	88	61.111	Cyprinodon_variegatus
ENSBTAG00000018729	SPEN	78	61.753	ENSDARG00000074332	si:ch1073-335m2.2	82	61.753	Danio_rerio
ENSBTAG00000018729	SPEN	97	46.629	ENSDARG00000074245	spen	100	88.889	Danio_rerio
ENSBTAG00000018729	SPEN	100	86.743	ENSDNOG00000041948	SPEN	100	86.507	Dasypus_novemcinctus
ENSBTAG00000018729	SPEN	99	79.647	ENSDORG00000023909	Spen	99	79.619	Dipodomys_ordii
ENSBTAG00000018729	SPEN	67	96.218	ENSETEG00000016692	-	67	96.234	Echinops_telfairi
ENSBTAG00000018729	SPEN	96	98.519	ENSEASG00005015911	SPEN	99	98.519	Equus_asinus_asinus
ENSBTAG00000018729	SPEN	96	98.519	ENSECAG00000008833	SPEN	99	98.519	Equus_caballus
ENSBTAG00000018729	SPEN	72	95.349	ENSEEUG00000010255	SPEN	76	95.349	Erinaceus_europaeus
ENSBTAG00000018729	SPEN	62	80.663	ENSELUG00000007726	si:ch1073-335m2.2	93	81.111	Esox_lucius
ENSBTAG00000018729	SPEN	99	81.118	ENSFDAG00000010212	SPEN	100	81.554	Fukomys_damarensis
ENSBTAG00000018729	SPEN	66	74.510	ENSFHEG00000004544	si:ch1073-335m2.2	86	75.000	Fundulus_heteroclitus
ENSBTAG00000018729	SPEN	81	66.008	ENSGMOG00000008397	-	95	66.008	Gadus_morhua
ENSBTAG00000018729	SPEN	80	80.447	ENSGMOG00000008156	si:ch1073-335m2.2	83	80.447	Gadus_morhua
ENSBTAG00000018729	SPEN	86	84.024	ENSGAFG00000021570	si:ch1073-335m2.2	86	84.024	Gambusia_affinis
ENSBTAG00000018729	SPEN	97	44.576	ENSGAFG00000015819	-	91	73.408	Gambusia_affinis
ENSBTAG00000018729	SPEN	77	73.333	ENSGACG00000001176	si:ch1073-335m2.2	82	73.333	Gasterosteus_aculeatus
ENSBTAG00000018729	SPEN	97	46.118	ENSGACG00000005341	-	99	46.485	Gasterosteus_aculeatus
ENSBTAG00000018729	SPEN	97	96.869	ENSGAGG00000020785	SPEN	100	71.086	Gopherus_agassizii
ENSBTAG00000018729	SPEN	100	87.255	ENSGGOG00000012041	SPEN	100	87.303	Gorilla_gorilla
ENSBTAG00000018729	SPEN	68	84.211	ENSHBUG00000023253	si:ch1073-335m2.2	65	84.211	Haplochromis_burtoni
ENSBTAG00000018729	SPEN	97	80.337	ENSHBUG00000020626	-	99	45.644	Haplochromis_burtoni
ENSBTAG00000018729	SPEN	100	81.259	ENSHGLG00000019259	SPEN	100	81.380	Heterocephalus_glaber_female
ENSBTAG00000018729	SPEN	88	85.222	ENSHGLG00100019294	SPEN	95	85.222	Heterocephalus_glaber_male
ENSBTAG00000018729	SPEN	75	81.250	ENSHCOG00000006004	si:ch1073-335m2.2	84	81.250	Hippocampus_comes
ENSBTAG00000018729	SPEN	78	77.273	ENSIPUG00000018212	si:ch1073-335m2.2	87	77.273	Ictalurus_punctatus
ENSBTAG00000018729	SPEN	97	81.667	ENSIPUG00000021668	spen	98	80.874	Ictalurus_punctatus
ENSBTAG00000018729	SPEN	99	85.962	ENSSTOG00000021428	SPEN	100	86.650	Ictidomys_tridecemlineatus
ENSBTAG00000018729	SPEN	100	82.719	ENSJJAG00000010882	Spen	100	82.828	Jaculus_jaculus
ENSBTAG00000018729	SPEN	69	79.775	ENSKMAG00000003882	-	69	55.962	Kryptolebias_marmoratus
ENSBTAG00000018729	SPEN	81	66.245	ENSKMAG00000021725	si:ch1073-335m2.2	86	66.245	Kryptolebias_marmoratus
ENSBTAG00000018729	SPEN	83	40.678	ENSLBEG00000019129	-	93	69.198	Labrus_bergylta
ENSBTAG00000018729	SPEN	75	76.503	ENSLBEG00000020855	si:ch1073-335m2.2	84	76.503	Labrus_bergylta
ENSBTAG00000018729	SPEN	94	81.863	ENSLACG00000003258	SPEN	99	81.863	Latimeria_chalumnae
ENSBTAG00000018729	SPEN	100	52.086	ENSLOCG00000007896	si:ch1073-335m2.2	99	54.113	Lepisosteus_oculatus
ENSBTAG00000018729	SPEN	99	86.813	ENSLAFG00000004524	SPEN	100	86.703	Loxodonta_africana
ENSBTAG00000018729	SPEN	100	86.779	ENSMFAG00000041974	SPEN	100	87.043	Macaca_fascicularis
ENSBTAG00000018729	SPEN	100	86.811	ENSMMUG00000008026	SPEN	100	87.043	Macaca_mulatta
ENSBTAG00000018729	SPEN	100	86.779	ENSMNEG00000042402	SPEN	100	87.070	Macaca_nemestrina
ENSBTAG00000018729	SPEN	100	86.670	ENSMLEG00000039293	SPEN	99	86.636	Mandrillus_leucophaeus
ENSBTAG00000018729	SPEN	62	69.863	ENSMAMG00000023870	si:ch1073-335m2.2	64	69.863	Mastacembelus_armatus
ENSBTAG00000018729	SPEN	88	42.055	ENSMZEG00005021491	-	99	42.601	Maylandia_zebra
ENSBTAG00000018729	SPEN	62	84.211	ENSMZEG00005011762	si:ch1073-335m2.2	65	84.211	Maylandia_zebra
ENSBTAG00000018729	SPEN	100	78.940	ENSMAUG00000008318	Spen	100	78.930	Mesocricetus_auratus
ENSBTAG00000018729	SPEN	100	88.165	ENSMICG00000030994	SPEN	100	87.592	Microcebus_murinus
ENSBTAG00000018729	SPEN	100	80.500	ENSMOCG00000016083	Spen	100	80.616	Microtus_ochrogaster
ENSBTAG00000018729	SPEN	97	80.899	ENSMALG00000008625	-	99	46.842	Monopterus_albus
ENSBTAG00000018729	SPEN	100	78.917	MGP_CAROLIEiJ_G0026745	Spen	100	79.078	Mus_caroli
ENSBTAG00000018729	SPEN	100	78.459	ENSMUSG00000040761	Spen	100	78.676	Mus_musculus
ENSBTAG00000018729	SPEN	100	78.496	MGP_PahariEiJ_G0029076	Spen	100	78.527	Mus_pahari
ENSBTAG00000018729	SPEN	100	78.715	MGP_SPRETEiJ_G0027724	Spen	100	79.167	Mus_spretus
ENSBTAG00000018729	SPEN	98	87.897	ENSMPUG00000016317	SPEN	100	88.056	Mustela_putorius_furo
ENSBTAG00000018729	SPEN	94	88.289	ENSMLUG00000010144	SPEN	99	93.561	Myotis_lucifugus
ENSBTAG00000018729	SPEN	100	78.290	ENSNGAG00000000641	Spen	95	84.926	Nannospalax_galili
ENSBTAG00000018729	SPEN	83	41.802	ENSNBRG00000022090	-	99	41.297	Neolamprologus_brichardi
ENSBTAG00000018729	SPEN	58	84.211	ENSNBRG00000005733	si:ch1073-335m2.2	60	84.211	Neolamprologus_brichardi
ENSBTAG00000018729	SPEN	99	86.770	ENSNLEG00000007652	SPEN	99	86.927	Nomascus_leucogenys
ENSBTAG00000018729	SPEN	87	93.750	ENSMEUG00000002422	SPEN	91	93.750	Notamacropus_eugenii
ENSBTAG00000018729	SPEN	93	88.971	ENSOPRG00000015800	SPEN	93	88.971	Ochotona_princeps
ENSBTAG00000018729	SPEN	100	80.882	ENSODEG00000016644	SPEN	100	80.865	Octodon_degus
ENSBTAG00000018729	SPEN	97	46.868	ENSONIG00000006573	-	99	81.273	Oreochromis_niloticus
ENSBTAG00000018729	SPEN	99	81.950	ENSOCUG00000010840	SPEN	99	82.067	Oryctolagus_cuniculus
ENSBTAG00000018729	SPEN	72	81.871	ENSORLG00000018414	si:ch1073-335m2.2	88	59.140	Oryzias_latipes
ENSBTAG00000018729	SPEN	73	73.077	ENSORLG00000028894	-	99	41.261	Oryzias_latipes
ENSBTAG00000018729	SPEN	83	77.665	ENSORLG00020007735	-	99	77.665	Oryzias_latipes_hni
ENSBTAG00000018729	SPEN	72	81.871	ENSORLG00020009351	si:ch1073-335m2.2	88	59.140	Oryzias_latipes_hni
ENSBTAG00000018729	SPEN	68	54.057	ENSORLG00015022085	-	88	47.047	Oryzias_latipes_hsok
ENSBTAG00000018729	SPEN	71	81.988	ENSORLG00015005537	si:ch1073-335m2.2	51	66.516	Oryzias_latipes_hsok
ENSBTAG00000018729	SPEN	73	68.349	ENSOMEG00000004509	si:ch1073-335m2.2	87	68.349	Oryzias_melastigma
ENSBTAG00000018729	SPEN	93	77.114	ENSOMEG00000007639	-	98	77.114	Oryzias_melastigma
ENSBTAG00000018729	SPEN	100	87.524	ENSOGAG00000025110	SPEN	100	87.334	Otolemur_garnettii
ENSBTAG00000018729	SPEN	99	96.247	ENSOARG00000008477	SPEN	99	96.247	Ovis_aries
ENSBTAG00000018729	SPEN	99	87.110	ENSPPAG00000035690	SPEN	100	87.158	Pan_paniscus
ENSBTAG00000018729	SPEN	100	87.181	ENSPTRG00000000210	SPEN	100	87.228	Pan_troglodytes
ENSBTAG00000018729	SPEN	100	85.857	ENSPANG00000006293	SPEN	100	85.796	Papio_anubis
ENSBTAG00000018729	SPEN	94	100.000	ENSPKIG00000010492	si:ch1073-335m2.2	98	100.000	Paramormyrops_kingsleyae
ENSBTAG00000018729	SPEN	88	51.735	ENSPKIG00000002617	SPEN	91	80.370	Paramormyrops_kingsleyae
ENSBTAG00000018729	SPEN	99	80.671	ENSPEMG00000022997	Spen	100	80.710	Peromyscus_maniculatus_bairdii
ENSBTAG00000018729	SPEN	64	76.119	ENSPFOG00000017986	si:ch1073-335m2.2	65	76.119	Poecilia_formosa
ENSBTAG00000018729	SPEN	55	76.119	ENSPLAG00000016625	si:ch1073-335m2.2	86	76.119	Poecilia_latipinna
ENSBTAG00000018729	SPEN	97	44.984	ENSPMEG00000006764	-	91	73.034	Poecilia_mexicana
ENSBTAG00000018729	SPEN	57	76.119	ENSPMEG00000002674	si:ch1073-335m2.2	65	76.119	Poecilia_mexicana
ENSBTAG00000018729	SPEN	97	44.948	ENSPREG00000010399	-	91	73.408	Poecilia_reticulata
ENSBTAG00000018729	SPEN	70	60.481	ENSPREG00000005357	si:ch1073-335m2.2	89	60.000	Poecilia_reticulata
ENSBTAG00000018729	SPEN	100	87.500	ENSPPYG00000001834	SPEN	100	87.575	Pongo_abelii
ENSBTAG00000018729	SPEN	88	89.680	ENSPCAG00000009543	SPEN	92	86.025	Procavia_capensis
ENSBTAG00000018729	SPEN	100	87.163	ENSPCOG00000021735	SPEN	100	86.761	Propithecus_coquereli
ENSBTAG00000018729	SPEN	84	95.745	ENSPVAG00000013794	SPEN	84	95.770	Pteropus_vampyrus
ENSBTAG00000018729	SPEN	62	84.211	ENSPNYG00000009042	si:ch1073-335m2.2	65	84.211	Pundamilia_nyererei
ENSBTAG00000018729	SPEN	97	80.337	ENSPNYG00000012379	-	99	45.827	Pundamilia_nyererei
ENSBTAG00000018729	SPEN	97	83.051	ENSPNAG00000020795	spen	86	77.444	Pygocentrus_nattereri
ENSBTAG00000018729	SPEN	81	75.789	ENSPNAG00000011452	si:ch1073-335m2.2	85	69.953	Pygocentrus_nattereri
ENSBTAG00000018729	SPEN	99	79.175	ENSRNOG00000033556	Spen	100	78.966	Rattus_norvegicus
ENSBTAG00000018729	SPEN	99	87.249	ENSRBIG00000039654	SPEN	100	87.325	Rhinopithecus_bieti
ENSBTAG00000018729	SPEN	99	86.974	ENSRROG00000035686	SPEN	100	87.033	Rhinopithecus_roxellana
ENSBTAG00000018729	SPEN	99	84.956	ENSSBOG00000028770	SPEN	99	84.603	Saimiri_boliviensis_boliviensis
ENSBTAG00000018729	SPEN	97	71.493	ENSSHAG00000004960	SPEN	99	92.992	Sarcophilus_harrisii
ENSBTAG00000018729	SPEN	93	89.655	ENSSFOG00015010267	si:ch1073-335m2.2	89	54.688	Scleropages_formosus
ENSBTAG00000018729	SPEN	84	65.741	ENSSFOG00015007131	si:ch1073-335m2.2	96	65.741	Scleropages_formosus
ENSBTAG00000018729	SPEN	97	80.899	ENSSMAG00000008996	-	99	46.141	Scophthalmus_maximus
ENSBTAG00000018729	SPEN	65	65.289	ENSSMAG00000000125	si:ch1073-335m2.2	65	65.289	Scophthalmus_maximus
ENSBTAG00000018729	SPEN	88	81.461	ENSSDUG00000003476	-	91	75.093	Seriola_dumerili
ENSBTAG00000018729	SPEN	84	83.626	ENSSDUG00000008416	si:ch1073-335m2.2	85	83.626	Seriola_dumerili
ENSBTAG00000018729	SPEN	97	81.461	ENSSLDG00000012950	-	91	75.093	Seriola_lalandi_dorsalis
ENSBTAG00000018729	SPEN	82	75.124	ENSSLDG00000023347	si:ch1073-335m2.2	85	75.124	Seriola_lalandi_dorsalis
ENSBTAG00000018729	SPEN	86	96.296	ENSSPUG00000001866	-	100	66.556	Sphenodon_punctatus
ENSBTAG00000018729	SPEN	92	84.211	ENSSPAG00000012454	si:ch1073-335m2.2	85	84.211	Stegastes_partitus
ENSBTAG00000018729	SPEN	97	80.337	ENSSPAG00000006014	-	91	74.157	Stegastes_partitus
ENSBTAG00000018729	SPEN	86	91.164	ENSSSCG00000034484	SPEN	99	91.132	Sus_scrofa
ENSBTAG00000018729	SPEN	97	44.320	ENSTRUG00000024350	-	99	45.135	Takifugu_rubripes
ENSBTAG00000018729	SPEN	53	80.226	ENSTRUG00000021008	si:ch1073-335m2.2	68	80.226	Takifugu_rubripes
ENSBTAG00000018729	SPEN	83	77.189	ENSTNIG00000010907	-	89	77.435	Tetraodon_nigroviridis
ENSBTAG00000018729	SPEN	82	82.456	ENSTNIG00000014666	si:ch1073-335m2.2	50	82.456	Tetraodon_nigroviridis
ENSBTAG00000018729	SPEN	77	94.860	ENSTBEG00000003628	SPEN	77	94.860	Tupaia_belangeri
ENSBTAG00000018729	SPEN	79	97.167	ENSTTRG00000015704	SPEN	79	97.167	Tursiops_truncatus
ENSBTAG00000018729	SPEN	100	89.641	ENSUAMG00000009600	SPEN	100	89.532	Ursus_americanus
ENSBTAG00000018729	SPEN	100	87.727	ENSUMAG00000021641	SPEN	100	87.874	Ursus_maritimus
ENSBTAG00000018729	SPEN	96	98.519	ENSVVUG00000028951	SPEN	99	100.000	Vulpes_vulpes
ENSBTAG00000018729	SPEN	97	57.409	ENSXETG00000023114	SPEN	99	57.017	Xenopus_tropicalis
ENSBTAG00000018729	SPEN	71	60.137	ENSXCOG00000004516	si:ch1073-335m2.2	80	60.137	Xiphophorus_couchianus
ENSBTAG00000018729	SPEN	75	60.000	ENSXMAG00000029887	si:ch1073-335m2.2	82	60.000	Xiphophorus_maculatus
ENSBTAG00000018729	SPEN	97	44.749	ENSXMAG00000021384	-	90	71.698	Xiphophorus_maculatus