EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000018855 (Gene tree)
Gene ID: 541016
Gene Symbol: SCAF4
Alias: -
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 61642 bases
Position: chr1:3760509-3822150
Accession: 52822
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000058009	RRM_1	PF00076.22	3.9e-09	1	1
ENSBTAP00000025104	RRM_1	PF00076.22	3.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000083963	-	3899	XM_002707686	ENSBTAP00000058009	1143 (aa)	XP_002707732	UPI0000EBC2C9
ENSBTAT00000025104	-	3408	-	ENSBTAP00000025104	1135 (aa)	-	F1MTX3

Gene Model

Click here to download ENSBTAG00000018855's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000018855's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000018855	SCAF4	100	92.254	ENSG00000156304	SCAF4	100	92.515	Homo_sapiens
ENSBTAG00000018855	SCAF4	79	52.345	ENSAPOG00000002946	scaf4a	55	57.801	Acanthochromis_polyacanthus
ENSBTAG00000018855	SCAF4	73	93.470	ENSAMEG00000014987	SCAF4	97	93.878	Ailuropoda_melanoleuca
ENSBTAG00000018855	SCAF4	58	66.667	ENSATEG00000011758	scaf4b	54	72.222	Anabas_testudineus
ENSBTAG00000018855	SCAF4	100	75.416	ENSAPLG00000002509	SCAF4	59	83.488	Anas_platyrhynchos
ENSBTAG00000018855	SCAF4	95	71.394	ENSACAG00000002569	SCAF4	51	83.537	Anolis_carolinensis
ENSBTAG00000018855	SCAF4	100	91.739	ENSANAG00000037494	SCAF4	100	92.522	Aotus_nancymaae
ENSBTAG00000018855	SCAF4	93	49.731	ENSAMXG00000008585	scaf4a	60	62.443	Astyanax_mexicanus
ENSBTAG00000018855	SCAF4	100	91.753	ENSCJAG00000008993	SCAF4	99	93.772	Callithrix_jacchus
ENSBTAG00000018855	SCAF4	100	94.361	ENSCAFG00000008863	SCAF4	100	94.097	Canis_familiaris
ENSBTAG00000018855	SCAF4	99	92.471	ENSCAFG00020026019	SCAF4	100	93.465	Canis_lupus_dingo
ENSBTAG00000018855	SCAF4	100	98.605	ENSCHIG00000008385	SCAF4	100	98.605	Capra_hircus
ENSBTAG00000018855	SCAF4	92	93.190	ENSTSYG00000011344	SCAF4	98	93.179	Carlito_syrichta
ENSBTAG00000018855	SCAF4	100	87.586	ENSCPOG00000012443	SCAF4	100	87.759	Cavia_porcellus
ENSBTAG00000018855	SCAF4	100	92.334	ENSCCAG00000033727	SCAF4	100	92.857	Cebus_capucinus
ENSBTAG00000018855	SCAF4	100	91.421	ENSCATG00000030379	SCAF4	100	92.201	Cercocebus_atys
ENSBTAG00000018855	SCAF4	99	89.323	ENSCLAG00000006298	SCAF4	100	89.236	Chinchilla_lanigera
ENSBTAG00000018855	SCAF4	100	91.840	ENSCSAG00000009438	SCAF4	100	92.361	Chlorocebus_sabaeus
ENSBTAG00000018855	SCAF4	100	92.073	ENSCANG00000029847	SCAF4	100	92.509	Colobus_angolensis_palliatus
ENSBTAG00000018855	SCAF4	68	89.235	ENSCGRG00001020821	Scaf4	69	85.305	Cricetulus_griseus_chok1gshd
ENSBTAG00000018855	SCAF4	68	88.660	ENSCGRG00000014360	Scaf4	69	85.252	Cricetulus_griseus_crigri
ENSBTAG00000018855	SCAF4	100	89.860	ENSDNOG00000019014	SCAF4	94	90.035	Dasypus_novemcinctus
ENSBTAG00000018855	SCAF4	96	79.927	ENSETEG00000000583	SCAF4	99	79.729	Echinops_telfairi
ENSBTAG00000018855	SCAF4	100	94.663	ENSEASG00005007756	SCAF4	100	94.926	Equus_asinus_asinus
ENSBTAG00000018855	SCAF4	100	94.493	ENSECAG00000014248	SCAF4	100	94.668	Equus_caballus
ENSBTAG00000018855	SCAF4	58	53.242	ENSELUG00000002779	SCAF8	61	68.841	Esox_lucius
ENSBTAG00000018855	SCAF4	100	93.810	ENSFCAG00000002228	SCAF4	100	94.159	Felis_catus
ENSBTAG00000018855	SCAF4	99	88.083	ENSFDAG00000017780	SCAF4	100	87.651	Fukomys_damarensis
ENSBTAG00000018855	SCAF4	100	76.629	ENSGALG00000033965	SCAF4	59	83.537	Gallus_gallus
ENSBTAG00000018855	SCAF4	70	54.359	ENSGACG00000020580	scaf4a	54	70.122	Gasterosteus_aculeatus
ENSBTAG00000018855	SCAF4	91	89.409	ENSGGOG00000015557	SCAF4	100	92.846	Gorilla_gorilla
ENSBTAG00000018855	SCAF4	100	89.888	ENSHGLG00000010582	SCAF4	100	90.147	Heterocephalus_glaber_female
ENSBTAG00000018855	SCAF4	99	89.764	ENSHGLG00100009441	SCAF4	100	90.026	Heterocephalus_glaber_male
ENSBTAG00000018855	SCAF4	70	58.869	ENSIPUG00000011285	scaf4	63	62.182	Ictalurus_punctatus
ENSBTAG00000018855	SCAF4	99	85.815	ENSSTOG00000004450	SCAF4	100	85.903	Ictidomys_tridecemlineatus
ENSBTAG00000018855	SCAF4	99	88.380	ENSJJAG00000019447	Scaf4	99	88.830	Jaculus_jaculus
ENSBTAG00000018855	SCAF4	97	60.683	ENSLACG00000013913	SCAF4	59	67.762	Latimeria_chalumnae
ENSBTAG00000018855	SCAF4	99	56.292	ENSLOCG00000009162	scaf4a	59	67.259	Lepisosteus_oculatus
ENSBTAG00000018855	SCAF4	100	91.637	ENSLAFG00000010710	SCAF4	100	92.004	Loxodonta_africana
ENSBTAG00000018855	SCAF4	100	91.616	ENSMFAG00000037668	SCAF4	100	91.876	Macaca_fascicularis
ENSBTAG00000018855	SCAF4	100	91.530	ENSMMUG00000001712	SCAF4	100	91.789	Macaca_mulatta
ENSBTAG00000018855	SCAF4	100	91.192	ENSMNEG00000032966	SCAF4	100	91.623	Macaca_nemestrina
ENSBTAG00000018855	SCAF4	99	91.354	ENSMLEG00000039674	SCAF4	100	92.140	Mandrillus_leucophaeus
ENSBTAG00000018855	SCAF4	99	76.311	ENSMGAG00000014515	SCAF4	63	82.370	Meleagris_gallopavo
ENSBTAG00000018855	SCAF4	99	87.820	ENSMAUG00000013307	Scaf4	100	88.152	Mesocricetus_auratus
ENSBTAG00000018855	SCAF4	100	93.275	ENSMICG00000005256	SCAF4	100	93.362	Microcebus_murinus
ENSBTAG00000018855	SCAF4	100	85.130	ENSMOCG00000012087	Scaf4	100	85.913	Microtus_ochrogaster
ENSBTAG00000018855	SCAF4	100	84.555	ENSMODG00000021040	SCAF4	100	83.944	Monodelphis_domestica
ENSBTAG00000018855	SCAF4	100	82.612	MGP_CAROLIEiJ_G0020944	Scaf4	95	88.974	Mus_caroli
ENSBTAG00000018855	SCAF4	100	82.310	ENSMUSG00000022983	Scaf4	95	89.433	Mus_musculus
ENSBTAG00000018855	SCAF4	100	81.412	MGP_PahariEiJ_G0016649	Scaf4	97	85.347	Mus_pahari
ENSBTAG00000018855	SCAF4	100	83.333	MGP_SPRETEiJ_G0021850	Scaf4	96	89.548	Mus_spretus
ENSBTAG00000018855	SCAF4	100	91.522	ENSMPUG00000001078	SCAF4	100	91.176	Mustela_putorius_furo
ENSBTAG00000018855	SCAF4	99	78.806	ENSMLUG00000011472	SCAF4	79	83.207	Myotis_lucifugus
ENSBTAG00000018855	SCAF4	99	89.982	ENSNGAG00000005214	Scaf4	99	90.359	Nannospalax_galili
ENSBTAG00000018855	SCAF4	100	91.993	ENSNLEG00000003569	SCAF4	100	92.602	Nomascus_leucogenys
ENSBTAG00000018855	SCAF4	79	90.217	ENSOPRG00000007016	SCAF4	77	89.674	Ochotona_princeps
ENSBTAG00000018855	SCAF4	100	88.014	ENSODEG00000002718	SCAF4	100	87.842	Octodon_degus
ENSBTAG00000018855	SCAF4	100	87.013	ENSOCUG00000008336	SCAF4	100	87.706	Oryctolagus_cuniculus
ENSBTAG00000018855	SCAF4	52	57.198	ENSORLG00000003420	scaf4b	67	59.072	Oryzias_latipes
ENSBTAG00000018855	SCAF4	99	92.677	ENSOGAG00000014653	SCAF4	94	92.929	Otolemur_garnettii
ENSBTAG00000018855	SCAF4	99	97.986	ENSOARG00000013894	SCAF4	99	97.817	Ovis_aries
ENSBTAG00000018855	SCAF4	100	92.254	ENSPPAG00000028535	SCAF4	100	92.515	Pan_paniscus
ENSBTAG00000018855	SCAF4	99	93.304	ENSPPRG00000000635	SCAF4	100	93.833	Panthera_pardus
ENSBTAG00000018855	SCAF4	99	91.262	ENSPTIG00000021578	SCAF4	99	87.457	Panthera_tigris_altaica
ENSBTAG00000018855	SCAF4	100	92.254	ENSPTRG00000013848	SCAF4	100	92.515	Pan_troglodytes
ENSBTAG00000018855	SCAF4	100	91.357	ENSPANG00000017332	SCAF4	100	92.135	Papio_anubis
ENSBTAG00000018855	SCAF4	64	63.144	ENSPKIG00000022408	scaf4a	90	65.719	Paramormyrops_kingsleyae
ENSBTAG00000018855	SCAF4	100	76.512	ENSPSIG00000014242	SCAF4	57	84.056	Pelodiscus_sinensis
ENSBTAG00000018855	SCAF4	61	87.088	ENSPCIG00000028183	SCAF4	91	81.746	Phascolarctos_cinereus
ENSBTAG00000018855	SCAF4	100	92.261	ENSPPYG00000011355	SCAF4	100	92.522	Pongo_abelii
ENSBTAG00000018855	SCAF4	100	81.779	ENSPCAG00000009998	SCAF4	100	80.209	Procavia_capensis
ENSBTAG00000018855	SCAF4	100	92.014	ENSPCOG00000018710	SCAF4	100	92.274	Propithecus_coquereli
ENSBTAG00000018855	SCAF4	100	93.701	ENSPVAG00000005220	SCAF4	100	93.876	Pteropus_vampyrus
ENSBTAG00000018855	SCAF4	76	58.126	ENSPNAG00000016892	scaf4a	60	63.487	Pygocentrus_nattereri
ENSBTAG00000018855	SCAF4	98	86.096	ENSRNOG00000002104	Scaf4	99	85.090	Rattus_norvegicus
ENSBTAG00000018855	SCAF4	99	90.237	ENSRBIG00000040007	SCAF4	99	89.860	Rhinopithecus_bieti
ENSBTAG00000018855	SCAF4	100	93.200	ENSRROG00000029488	SCAF4	100	93.112	Rhinopithecus_roxellana
ENSBTAG00000018855	SCAF4	100	83.755	ENSSHAG00000001581	SCAF4	100	82.795	Sarcophilus_harrisii
ENSBTAG00000018855	SCAF4	88	47.172	ENSSFOG00015006338	scaf4a	54	57.404	Scleropages_formosus
ENSBTAG00000018855	SCAF4	66	59.636	ENSSMAG00000003738	scaf4b	54	72.152	Scophthalmus_maximus
ENSBTAG00000018855	SCAF4	57	62.007	ENSSDUG00000012380	scaf4b	54	70.886	Seriola_dumerili
ENSBTAG00000018855	SCAF4	57	62.007	ENSSLDG00000023152	-	54	70.886	Seriola_lalandi_dorsalis
ENSBTAG00000018855	SCAF4	100	89.264	ENSSARG00000009994	SCAF4	100	89.351	Sorex_araneus
ENSBTAG00000018855	SCAF4	100	90.155	ENSSSCG00000021023	SCAF4	100	90.069	Sus_scrofa
ENSBTAG00000018855	SCAF4	75	71.521	ENSTGUG00000013464	SCAF4	61	83.526	Taeniopygia_guttata
ENSBTAG00000018855	SCAF4	50	59.489	ENSTRUG00000009536	-	66	57.627	Takifugu_rubripes
ENSBTAG00000018855	SCAF4	99	93.380	ENSTTRG00000010963	SCAF4	100	92.851	Tursiops_truncatus
ENSBTAG00000018855	SCAF4	100	92.388	ENSUAMG00000008860	SCAF4	100	92.388	Ursus_americanus
ENSBTAG00000018855	SCAF4	99	91.231	ENSUMAG00000016962	SCAF4	100	92.205	Ursus_maritimus
ENSBTAG00000018855	SCAF4	99	94.420	ENSVVUG00000002953	SCAF4	100	94.154	Vulpes_vulpes
ENSBTAG00000018855	SCAF4	99	54.895	ENSXETG00000007351	scaf4	63	61.966	Xenopus_tropicalis