EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000018979 (Gene tree)
Gene ID: 535450
Gene Symbol: PUM1
Alias: -
Full Name: Bos taurus pumilio RNA binding family member 1 (PUM1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 126234 bases
Position: chr2:122527753-122653986
Accession: NM_001193123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000063131	PUF	PF00806.19	4e-72	1	8
ENSBTAP00000063131	PUF	PF00806.19	4e-72	2	8
ENSBTAP00000063131	PUF	PF00806.19	4e-72	3	8
ENSBTAP00000063131	PUF	PF00806.19	4e-72	4	8
ENSBTAP00000063131	PUF	PF00806.19	4e-72	5	8
ENSBTAP00000063131	PUF	PF00806.19	4e-72	6	8
ENSBTAP00000063131	PUF	PF00806.19	4e-72	7	8
ENSBTAP00000063131	PUF	PF00806.19	4e-72	8	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	1	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	2	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	3	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	4	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	5	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	6	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	7	8
ENSBTAP00000025262	PUF	PF00806.19	3e-71	8	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	1	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	2	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	3	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	4	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	5	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	6	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	7	8
ENSBTAP00000072590	PUF	PF00806.19	3.4e-71	8	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	1	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	2	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	3	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	4	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	5	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	6	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	7	8
ENSBTAP00000057100	PUF	PF00806.19	3.9e-71	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000075927	-	4842	-	ENSBTAP00000072590	1092 (aa)	XP_005203007	UPI000383B2B9
ENSBTAT00000068355	-	4401	-	ENSBTAP00000063131	945 (aa)	-	-
ENSBTAT00000025262	-	5450	XM_005202941	ENSBTAP00000025262	1186 (aa)	XP_005202998	E1BE82
ENSBTAT00000074155	-	4893	-	ENSBTAP00000057100	1109 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000018979's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000018979's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000018979	PUM1	86	87.765	ENSBTAG00000011155	PUM2	100	89.320

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000018979	PUM1	100	100.000	ENSG00000134644	PUM1	100	100.000	Homo_sapiens
ENSBTAG00000018979	PUM1	90	92.010	ENSAPOG00000021632	pum1	100	91.525	Acanthochromis_polyacanthus
ENSBTAG00000018979	PUM1	100	100.000	ENSAMEG00000017656	PUM1	97	99.244	Ailuropoda_melanoleuca
ENSBTAG00000018979	PUM1	100	81.459	ENSACIG00000021013	pum1	100	76.846	Amphilophus_citrinellus
ENSBTAG00000018979	PUM1	90	92.010	ENSAOCG00000003944	pum1	100	79.400	Amphiprion_ocellaris
ENSBTAG00000018979	PUM1	90	92.010	ENSAPEG00000014550	pum1	100	79.400	Amphiprion_percula
ENSBTAG00000018979	PUM1	100	92.048	ENSATEG00000016004	pum1	100	91.525	Anabas_testudineus
ENSBTAG00000018979	PUM1	100	98.792	ENSAPLG00000009351	PUM1	100	97.393	Anas_platyrhynchos
ENSBTAG00000018979	PUM1	100	99.034	ENSACAG00000000682	PUM1	98	95.623	Anolis_carolinensis
ENSBTAG00000018979	PUM1	100	100.000	ENSANAG00000027865	PUM1	100	100.000	Aotus_nancymaae
ENSBTAG00000018979	PUM1	90	76.738	ENSACLG00000019354	pum1	100	79.001	Astatotilapia_calliptera
ENSBTAG00000018979	PUM1	100	84.511	ENSAMXG00000020607	pum1	92	93.237	Astyanax_mexicanus
ENSBTAG00000018979	PUM1	100	100.000	ENSCJAG00000006035	PUM1	100	100.000	Callithrix_jacchus
ENSBTAG00000018979	PUM1	100	100.000	ENSCAFG00000011205	PUM1	100	97.056	Canis_familiaris
ENSBTAG00000018979	PUM1	90	100.000	ENSCAFG00020024616	PUM1	98	100.000	Canis_lupus_dingo
ENSBTAG00000018979	PUM1	100	100.000	ENSCHIG00000012952	PUM1	100	100.000	Capra_hircus
ENSBTAG00000018979	PUM1	100	99.758	ENSTSYG00000008868	PUM1	100	99.306	Carlito_syrichta
ENSBTAG00000018979	PUM1	100	99.306	ENSCPOG00000031613	PUM1	100	99.306	Cavia_porcellus
ENSBTAG00000018979	PUM1	100	100.000	ENSCATG00000017991	PUM1	100	100.000	Cercocebus_atys
ENSBTAG00000018979	PUM1	100	99.306	ENSCLAG00000007662	PUM1	100	99.306	Chinchilla_lanigera
ENSBTAG00000018979	PUM1	100	100.000	ENSCSAG00000001028	PUM1	100	98.417	Chlorocebus_sabaeus
ENSBTAG00000018979	PUM1	99	96.259	ENSCHOG00000010245	PUM1	93	96.259	Choloepus_hoffmanni
ENSBTAG00000018979	PUM1	100	98.792	ENSCPBG00000009288	PUM1	100	98.786	Chrysemys_picta_bellii
ENSBTAG00000018979	PUM1	100	100.000	ENSCANG00000042606	PUM1	100	100.000	Colobus_angolensis_palliatus
ENSBTAG00000018979	PUM1	100	99.306	ENSCGRG00001024949	Pum1	100	99.306	Cricetulus_griseus_chok1gshd
ENSBTAG00000018979	PUM1	100	99.306	ENSCGRG00000014197	Pum1	100	99.306	Cricetulus_griseus_crigri
ENSBTAG00000018979	PUM1	89	91.566	ENSCSEG00000015981	pum1	93	91.084	Cynoglossus_semilaevis
ENSBTAG00000018979	PUM1	100	80.964	ENSCVAG00000007043	pum1	100	75.785	Cyprinodon_variegatus
ENSBTAG00000018979	PUM1	100	93.478	ENSDARG00000099256	pum1	95	94.408	Danio_rerio
ENSBTAG00000018979	PUM1	100	100.000	ENSDNOG00000010939	PUM1	100	98.907	Dasypus_novemcinctus
ENSBTAG00000018979	PUM1	89	98.081	ENSDORG00000001875	Pum1	100	99.272	Dipodomys_ordii
ENSBTAG00000018979	PUM1	85	100.000	ENSETEG00000004355	PUM1	87	93.848	Echinops_telfairi
ENSBTAG00000018979	PUM1	100	100.000	ENSEASG00005010813	PUM1	100	99.158	Equus_asinus_asinus
ENSBTAG00000018979	PUM1	100	99.517	ENSECAG00000021369	PUM1	100	98.991	Equus_caballus
ENSBTAG00000018979	PUM1	80	100.000	ENSEEUG00000003871	PUM1	74	100.000	Erinaceus_europaeus
ENSBTAG00000018979	PUM1	100	83.619	ENSELUG00000002409	pum1	95	93.720	Esox_lucius
ENSBTAG00000018979	PUM1	100	100.000	ENSFCAG00000010374	PUM1	100	100.000	Felis_catus
ENSBTAG00000018979	PUM1	100	99.034	ENSFALG00000001214	PUM1	97	95.980	Ficedula_albicollis
ENSBTAG00000018979	PUM1	100	99.306	ENSFDAG00000011319	PUM1	100	99.306	Fukomys_damarensis
ENSBTAG00000018979	PUM1	91	91.566	ENSGMOG00000010491	pum1	94	91.084	Gadus_morhua
ENSBTAG00000018979	PUM1	100	99.034	ENSGALG00000042598	PUM1	100	97.896	Gallus_gallus
ENSBTAG00000018979	PUM1	100	81.088	ENSGAFG00000015617	pum1	100	90.799	Gambusia_affinis
ENSBTAG00000018979	PUM1	100	81.281	ENSGACG00000005717	pum1	100	76.359	Gasterosteus_aculeatus
ENSBTAG00000018979	PUM1	100	98.792	ENSGAGG00000001290	PUM1	99	98.381	Gopherus_agassizii
ENSBTAG00000018979	PUM1	100	100.000	ENSGGOG00000011983	PUM1	100	100.000	Gorilla_gorilla
ENSBTAG00000018979	PUM1	100	81.211	ENSHBUG00000018718	pum1	100	76.364	Haplochromis_burtoni
ENSBTAG00000018979	PUM1	100	99.027	ENSHGLG00000013819	Pum1	100	98.810	Heterocephalus_glaber_female
ENSBTAG00000018979	PUM1	100	99.027	ENSHGLG00100008621	Pum1	100	98.810	Heterocephalus_glaber_male
ENSBTAG00000018979	PUM1	100	92.512	ENSIPUG00000020421	pum1	93	92.512	Ictalurus_punctatus
ENSBTAG00000018979	PUM1	100	100.000	ENSSTOG00000010757	PUM1	100	100.000	Ictidomys_tridecemlineatus
ENSBTAG00000018979	PUM1	100	100.000	ENSJJAG00000000530	Pum1	100	100.000	Jaculus_jaculus
ENSBTAG00000018979	PUM1	100	80.593	ENSKMAG00000003481	pum1	100	75.950	Kryptolebias_marmoratus
ENSBTAG00000018979	PUM1	100	92.048	ENSLBEG00000002527	pum1	94	91.566	Labrus_bergylta
ENSBTAG00000018979	PUM1	100	88.848	ENSLACG00000017188	PUM1	99	86.511	Latimeria_chalumnae
ENSBTAG00000018979	PUM1	100	96.860	ENSLOCG00000005210	pum1	95	96.860	Lepisosteus_oculatus
ENSBTAG00000018979	PUM1	100	99.275	ENSLAFG00000003178	PUM1	100	98.654	Loxodonta_africana
ENSBTAG00000018979	PUM1	100	100.000	ENSMFAG00000010291	PUM1	100	100.000	Macaca_fascicularis
ENSBTAG00000018979	PUM1	100	100.000	ENSMMUG00000013520	PUM1	100	100.000	Macaca_mulatta
ENSBTAG00000018979	PUM1	100	100.000	ENSMNEG00000034639	PUM1	100	100.000	Macaca_nemestrina
ENSBTAG00000018979	PUM1	100	100.000	ENSMLEG00000038743	PUM1	100	100.000	Mandrillus_leucophaeus
ENSBTAG00000018979	PUM1	100	91.807	ENSMAMG00000011606	pum1	94	91.325	Mastacembelus_armatus
ENSBTAG00000018979	PUM1	100	81.211	ENSMZEG00005005834	pum1	100	76.364	Maylandia_zebra
ENSBTAG00000018979	PUM1	100	99.034	ENSMGAG00000000724	PUM1	100	97.621	Meleagris_gallopavo
ENSBTAG00000018979	PUM1	100	99.306	ENSMAUG00000022090	Pum1	100	99.306	Mesocricetus_auratus
ENSBTAG00000018979	PUM1	99	97.887	ENSMICG00000012213	-	100	96.486	Microcebus_murinus
ENSBTAG00000018979	PUM1	100	99.517	ENSMICG00000007713	-	100	99.515	Microcebus_murinus
ENSBTAG00000018979	PUM1	100	99.034	ENSMOCG00000015463	Pum1	100	98.810	Microtus_ochrogaster
ENSBTAG00000018979	PUM1	90	88.684	ENSMMOG00000019817	pum1	100	91.283	Mola_mola
ENSBTAG00000018979	PUM1	100	98.309	ENSMODG00000017067	PUM1	100	97.647	Monodelphis_domestica
ENSBTAG00000018979	PUM1	90	88.915	ENSMALG00000016399	pum1	100	91.525	Monopterus_albus
ENSBTAG00000018979	PUM1	100	99.034	MGP_CAROLIEiJ_G0026549	Pum1	100	98.651	Mus_caroli
ENSBTAG00000018979	PUM1	100	99.306	ENSMUSG00000028580	Pum1	100	99.306	Mus_musculus
ENSBTAG00000018979	PUM1	100	99.306	MGP_PahariEiJ_G0028881	Pum1	100	99.306	Mus_pahari
ENSBTAG00000018979	PUM1	100	99.306	MGP_SPRETEiJ_G0027529	Pum1	100	99.306	Mus_spretus
ENSBTAG00000018979	PUM1	100	100.000	ENSMPUG00000015454	PUM1	100	99.074	Mustela_putorius_furo
ENSBTAG00000018979	PUM1	100	100.000	ENSMLUG00000006490	PUM1	100	99.242	Myotis_lucifugus
ENSBTAG00000018979	PUM1	100	99.275	ENSNGAG00000002378	Pum1	100	99.251	Nannospalax_galili
ENSBTAG00000018979	PUM1	100	78.579	ENSNBRG00000010689	pum1	100	83.911	Neolamprologus_brichardi
ENSBTAG00000018979	PUM1	100	99.306	ENSNLEG00000001151	PUM1	100	99.306	Nomascus_leucogenys
ENSBTAG00000018979	PUM1	90	95.172	ENSMEUG00000000976	-	75	96.959	Notamacropus_eugenii
ENSBTAG00000018979	PUM1	84	99.203	ENSOPRG00000001776	PUM1	72	99.203	Ochotona_princeps
ENSBTAG00000018979	PUM1	100	99.275	ENSODEG00000003465	PUM1	100	98.901	Octodon_degus
ENSBTAG00000018979	PUM1	100	81.763	ENSONIG00000002290	pum1	93	91.325	Oreochromis_niloticus
ENSBTAG00000018979	PUM1	80	83.077	ENSOANG00000004902	-	100	77.971	Ornithorhynchus_anatinus
ENSBTAG00000018979	PUM1	100	100.000	ENSOCUG00000008641	PUM1	99	98.905	Oryctolagus_cuniculus
ENSBTAG00000018979	PUM1	100	82.077	ENSORLG00000011482	pum1	94	91.084	Oryzias_latipes
ENSBTAG00000018979	PUM1	100	82.200	ENSORLG00020019461	pum1	100	76.112	Oryzias_latipes_hni
ENSBTAG00000018979	PUM1	100	82.200	ENSORLG00015011375	pum1	100	76.194	Oryzias_latipes_hsok
ENSBTAG00000018979	PUM1	90	93.220	ENSOMEG00000009312	pum1	100	77.326	Oryzias_melastigma
ENSBTAG00000018979	PUM1	100	99.306	ENSOGAG00000011063	PUM1	100	96.306	Otolemur_garnettii
ENSBTAG00000018979	PUM1	100	100.000	ENSOARG00000001899	PUM1	100	100.000	Ovis_aries
ENSBTAG00000018979	PUM1	100	100.000	ENSPPAG00000044003	PUM1	100	100.000	Pan_paniscus
ENSBTAG00000018979	PUM1	100	100.000	ENSPPRG00000001370	PUM1	100	100.000	Panthera_pardus
ENSBTAG00000018979	PUM1	100	100.000	ENSPTIG00000010798	PUM1	100	100.000	Panthera_tigris_altaica
ENSBTAG00000018979	PUM1	100	100.000	ENSPTRG00000000453	PUM1	100	100.000	Pan_troglodytes
ENSBTAG00000018979	PUM1	100	100.000	ENSPANG00000016338	PUM1	100	100.000	Papio_anubis
ENSBTAG00000018979	PUM1	100	82.396	ENSPKIG00000010578	pum1	93	93.961	Paramormyrops_kingsleyae
ENSBTAG00000018979	PUM1	100	98.792	ENSPSIG00000014118	PUM1	100	97.811	Pelodiscus_sinensis
ENSBTAG00000018979	PUM1	100	76.947	ENSPMGG00000005836	pum1	100	82.353	Periophthalmus_magnuspinnatus
ENSBTAG00000018979	PUM1	100	99.306	ENSPEMG00000010009	Pum1	100	99.306	Peromyscus_maniculatus_bairdii
ENSBTAG00000018979	PUM1	100	98.309	ENSPCIG00000014151	PUM1	100	98.010	Phascolarctos_cinereus
ENSBTAG00000018979	PUM1	94	91.325	ENSPFOG00000007289	pum1	93	90.843	Poecilia_formosa
ENSBTAG00000018979	PUM1	100	91.325	ENSPLAG00000007256	pum1	94	90.843	Poecilia_latipinna
ENSBTAG00000018979	PUM1	85	83.107	ENSPMEG00000019543	pum1	99	78.381	Poecilia_mexicana
ENSBTAG00000018979	PUM1	100	81.088	ENSPREG00000005195	pum1	100	81.409	Poecilia_reticulata
ENSBTAG00000018979	PUM1	100	100.000	ENSPPYG00000001621	PUM1	100	97.442	Pongo_abelii
ENSBTAG00000018979	PUM1	84	99.691	ENSPCAG00000001979	PUM1	74	99.691	Procavia_capensis
ENSBTAG00000018979	PUM1	100	99.517	ENSPCOG00000004398	PUM1	100	99.515	Propithecus_coquereli
ENSBTAG00000018979	PUM1	100	100.000	ENSPVAG00000005207	PUM1	97	97.222	Pteropus_vampyrus
ENSBTAG00000018979	PUM1	100	81.211	ENSPNYG00000009518	pum1	100	81.840	Pundamilia_nyererei
ENSBTAG00000018979	PUM1	100	93.478	ENSPNAG00000026728	pum1	95	93.478	Pygocentrus_nattereri
ENSBTAG00000018979	PUM1	100	99.306	ENSRNOG00000011709	Pum1	100	98.904	Rattus_norvegicus
ENSBTAG00000018979	PUM1	100	100.000	ENSRBIG00000042521	PUM1	100	100.000	Rhinopithecus_bieti
ENSBTAG00000018979	PUM1	100	100.000	ENSRROG00000020156	PUM1	100	100.000	Rhinopithecus_roxellana
ENSBTAG00000018979	PUM1	100	100.000	ENSSBOG00000032037	PUM1	100	100.000	Saimiri_boliviensis_boliviensis
ENSBTAG00000018979	PUM1	100	98.309	ENSSHAG00000010918	PUM1	100	97.563	Sarcophilus_harrisii
ENSBTAG00000018979	PUM1	100	92.048	ENSSMAG00000010918	pum1	100	91.525	Scophthalmus_maximus
ENSBTAG00000018979	PUM1	100	92.048	ENSSDUG00000009021	pum1	94	91.566	Seriola_dumerili
ENSBTAG00000018979	PUM1	95	92.048	ENSSLDG00000009667	pum1	93	91.566	Seriola_lalandi_dorsalis
ENSBTAG00000018979	PUM1	99	100.000	ENSSARG00000003055	PUM1	91	100.000	Sorex_araneus
ENSBTAG00000018979	PUM1	100	99.034	ENSSPUG00000006267	PUM1	100	97.054	Sphenodon_punctatus
ENSBTAG00000018979	PUM1	90	92.010	ENSSPAG00000016636	pum1	100	79.400	Stegastes_partitus
ENSBTAG00000018979	PUM1	100	100.000	ENSSSCG00000003591	PUM1	100	100.000	Sus_scrofa
ENSBTAG00000018979	PUM1	100	92.048	ENSTRUG00000013121	pum1	94	91.566	Takifugu_rubripes
ENSBTAG00000018979	PUM1	100	91.827	ENSTNIG00000016983	pum1	93	91.346	Tetraodon_nigroviridis
ENSBTAG00000018979	PUM1	84	100.000	ENSTBEG00000013810	PUM1	88	95.122	Tupaia_belangeri
ENSBTAG00000018979	PUM1	92	99.544	ENSTTRG00000007436	PUM1	90	99.544	Tursiops_truncatus
ENSBTAG00000018979	PUM1	99	99.261	ENSUAMG00000018262	-	100	99.261	Ursus_americanus
ENSBTAG00000018979	PUM1	100	99.549	ENSUMAG00000009211	PUM1	100	100.000	Ursus_maritimus
ENSBTAG00000018979	PUM1	100	99.306	ENSVPAG00000005902	PUM1	92	99.661	Vicugna_pacos
ENSBTAG00000018979	PUM1	100	100.000	ENSVVUG00000014631	PUM1	100	99.517	Vulpes_vulpes
ENSBTAG00000018979	PUM1	100	89.614	ENSXETG00000012904	pum1	99	86.398	Xenopus_tropicalis
ENSBTAG00000018979	PUM1	100	81.088	ENSXMAG00000002945	pum1	100	78.031	Xiphophorus_maculatus