EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSBTAG00000019220 (Gene tree)
Gene ID
414274
Gene Symbol
SMARCA4
Alias
-
Full Name
Bos taurus SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 4 (SMARCA4)%2C mRNA.
Gene Type
protein_coding
Species
Bos_taurus
Status
putative
Strand
Plus strand
Length
90280 bases
Position
chr7:15424807-15515086
Accession
NM_001105614
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSBTAP00000025598ResIIIPF04851.152.2e-0911
ENSBTAP00000059124ResIIIPF04851.152.2e-0911
ENSBTAP00000025598BRKPF07533.161.8e-1711
ENSBTAP00000059124BRKPF07533.161.8e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSBTAT00000072138-4836-ENSBTAP000000591241611 (aa)--
ENSBTAT00000025598-5459XM_024993896ENSBTAP000000255981606 (aa)XP_024849664A7Z019
Gene Model
Click here to download ENSBTAG00000019220's gene model file
Pathways
Pathway IDPathway NameSource
bta04714ThermogenesisKEGG
bta05225Hepatocellular carcinomaKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000019220's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSBTAG00000019220SMARCA49876.254ENSBTAG00000007494SMARCA29676.992
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSBTAG00000019220SMARCA410099.009ENSG00000127616SMARCA410099.719Homo_sapiens
ENSBTAG00000019220SMARCA49583.718ENSAPOG00000004542SMARCA49883.499Acanthochromis_polyacanthus
ENSBTAG00000019220SMARCA47588.183ENSAPOG00000003509smarca4a9886.469Acanthochromis_polyacanthus
ENSBTAG00000019220SMARCA410094.517ENSAMEG00000010868SMARCA410094.517Ailuropoda_melanoleuca
ENSBTAG00000019220SMARCA49587.894ENSACIG00000021550smarca4a9887.787Amphilophus_citrinellus
ENSBTAG00000019220SMARCA48786.081ENSAOCG00000019167smarca4a10086.736Amphiprion_ocellaris
ENSBTAG00000019220SMARCA49486.891ENSAOCG00000009450-9786.991Amphiprion_ocellaris
ENSBTAG00000019220SMARCA410083.175ENSAPEG00000023108-9982.712Amphiprion_percula
ENSBTAG00000019220SMARCA48786.153ENSAPEG00000015559smarca4a10086.806Amphiprion_percula
ENSBTAG00000019220SMARCA49984.156ENSATEG00000001094-9982.303Anabas_testudineus
ENSBTAG00000019220SMARCA49887.524ENSATEG00000011524smarca4a10088.066Anabas_testudineus
ENSBTAG00000019220SMARCA49998.634ENSANAG00000036991SMARCA410095.499Aotus_nancymaae
ENSBTAG00000019220SMARCA49589.027ENSACLG00000000163smarca4a9888.686Astatotilapia_calliptera
ENSBTAG00000019220SMARCA49584.173ENSACLG00000008638-9883.417Astatotilapia_calliptera
ENSBTAG00000019220SMARCA49487.524ENSAMXG00000011238-9887.835Astyanax_mexicanus
ENSBTAG00000019220SMARCA49783.354ENSAMXG00000021023smarca4a8389.457Astyanax_mexicanus
ENSBTAG00000019220SMARCA410095.057ENSCJAG00000005936SMARCA410095.057Callithrix_jacchus
ENSBTAG00000019220SMARCA410098.885ENSCAFG00000017584SMARCA410098.885Canis_familiaris
ENSBTAG00000019220SMARCA410098.885ENSCAFG00020024620SMARCA49998.885Canis_lupus_dingo
ENSBTAG00000019220SMARCA410095.525ENSCHIG00000015318SMARCA410095.525Capra_hircus
ENSBTAG00000019220SMARCA410099.128ENSTSYG00000012966SMARCA410099.128Carlito_syrichta
ENSBTAG00000019220SMARCA49489.169ENSCAPG00000015932SMARCA49695.145Cavia_aperea
ENSBTAG00000019220SMARCA410098.203ENSCPOG00000015549SMARCA410098.203Cavia_porcellus
ENSBTAG00000019220SMARCA410095.071ENSCCAG00000031660SMARCA49995.071Cebus_capucinus
ENSBTAG00000019220SMARCA410099.009ENSCATG00000029530SMARCA410099.009Cercocebus_atys
ENSBTAG00000019220SMARCA410098.755ENSCLAG00000011946SMARCA410098.755Chinchilla_lanigera
ENSBTAG00000019220SMARCA410096.780ENSCPBG00000009994SMARCA410096.780Chrysemys_picta_bellii
ENSBTAG00000019220SMARCA410098.885ENSCANG00000036013SMARCA410098.885Colobus_angolensis_palliatus
ENSBTAG00000019220SMARCA410098.389ENSCGRG00001016732Smarca410098.389Cricetulus_griseus_chok1gshd
ENSBTAG00000019220SMARCA410098.389ENSCGRG00000017242Smarca410098.389Cricetulus_griseus_crigri
ENSBTAG00000019220SMARCA49687.127ENSCSEG00000014771smarca4a10087.217Cynoglossus_semilaevis
ENSBTAG00000019220SMARCA49587.145ENSCVAG00000006979smarca4a9987.081Cyprinodon_variegatus
ENSBTAG00000019220SMARCA49984.336ENSCVAG00000003018-9687.599Cyprinodon_variegatus
ENSBTAG00000019220SMARCA49284.970ENSDARG00000104339SMARCA49585.639Danio_rerio
ENSBTAG00000019220SMARCA410087.241ENSDARG00000077226smarca4a10087.485Danio_rerio
ENSBTAG00000019220SMARCA410090.187ENSDNOG00000048847SMARCA49399.154Dasypus_novemcinctus
ENSBTAG00000019220SMARCA48590.639ENSDORG00000002544Smarca49191.968Dipodomys_ordii
ENSBTAG00000019220SMARCA49486.883ENSETEG00000013361SMARCA49486.364Echinops_telfairi
ENSBTAG00000019220SMARCA410098.575ENSEASG00005006167SMARCA49898.575Equus_asinus_asinus
ENSBTAG00000019220SMARCA410098.637ENSECAG00000008334SMARCA410098.637Equus_caballus
ENSBTAG00000019220SMARCA410086.756ENSELUG00000010247smarca4a10085.176Esox_lucius
ENSBTAG00000019220SMARCA49978.225ENSELUG00000023232-9878.944Esox_lucius
ENSBTAG00000019220SMARCA410098.701ENSFCAG00000004894SMARCA410098.701Felis_catus
ENSBTAG00000019220SMARCA47497.817ENSFALG00000004208SMARCA49392.220Ficedula_albicollis
ENSBTAG00000019220SMARCA49298.173ENSFDAG00000012237SMARCA49798.173Fukomys_damarensis
ENSBTAG00000019220SMARCA410084.189ENSFHEG00000007902-9884.875Fundulus_heteroclitus
ENSBTAG00000019220SMARCA49685.921ENSFHEG00000010182smarca4a10085.853Fundulus_heteroclitus
ENSBTAG00000019220SMARCA49381.040ENSGMOG00000002649smarca4a8881.882Gadus_morhua
ENSBTAG00000019220SMARCA49280.687ENSGMOG00000005756-8779.553Gadus_morhua
ENSBTAG00000019220SMARCA47396.610ENSGALG00000047145SMARCA410096.610Gallus_gallus
ENSBTAG00000019220SMARCA48988.353ENSGAFG00000014900smarca4a9988.187Gambusia_affinis
ENSBTAG00000019220SMARCA49982.206ENSGAFG00000008827-9882.018Gambusia_affinis
ENSBTAG00000019220SMARCA49980.872ENSGACG00000016033-9979.770Gasterosteus_aculeatus
ENSBTAG00000019220SMARCA49886.108ENSGACG00000006691smarca4a10086.125Gasterosteus_aculeatus
ENSBTAG00000019220SMARCA410096.898ENSGAGG00000016757SMARCA410096.898Gopherus_agassizii
ENSBTAG00000019220SMARCA410099.009ENSGGOG00000009882SMARCA410099.009Gorilla_gorilla
ENSBTAG00000019220SMARCA410084.024ENSHBUG00000005447-9983.453Haplochromis_burtoni
ENSBTAG00000019220SMARCA49887.900ENSHBUG00000021172smarca4a10088.120Haplochromis_burtoni
ENSBTAG00000019220SMARCA410097.903ENSHGLG00000010519SMARCA410097.903Heterocephalus_glaber_female
ENSBTAG00000019220SMARCA410097.153ENSHGLG00100013774SMARCA410097.153Heterocephalus_glaber_male
ENSBTAG00000019220SMARCA49286.684ENSHCOG00000009510smarca4a9687.709Hippocampus_comes
ENSBTAG00000019220SMARCA410088.088ENSIPUG00000006107smarca4a10088.088Ictalurus_punctatus
ENSBTAG00000019220SMARCA49884.805ENSIPUG00000016346-9884.509Ictalurus_punctatus
ENSBTAG00000019220SMARCA410098.823ENSSTOG00000007939SMARCA410098.823Ictidomys_tridecemlineatus
ENSBTAG00000019220SMARCA410096.600ENSJJAG00000012877Smarca410096.600Jaculus_jaculus
ENSBTAG00000019220SMARCA49783.303ENSKMAG00000019518-9887.581Kryptolebias_marmoratus
ENSBTAG00000019220SMARCA49886.973ENSKMAG00000011931smarca4a10086.986Kryptolebias_marmoratus
ENSBTAG00000019220SMARCA49286.145ENSLBEG00000017383smarca4a7789.348Labrus_bergylta
ENSBTAG00000019220SMARCA47883.307ENSLBEG00000020655-8176.947Labrus_bergylta
ENSBTAG00000019220SMARCA45189.157ENSLACG00000015309SMARCA410089.130Latimeria_chalumnae
ENSBTAG00000019220SMARCA410088.268ENSLOCG00000007820smarca4a7992.666Lepisosteus_oculatus
ENSBTAG00000019220SMARCA410098.763ENSLAFG00000001433SMARCA410098.763Loxodonta_africana
ENSBTAG00000019220SMARCA410099.009ENSMFAG00000032146SMARCA49999.009Macaca_fascicularis
ENSBTAG00000019220SMARCA410099.009ENSMMUG00000012042SMARCA410099.009Macaca_mulatta
ENSBTAG00000019220SMARCA410099.069ENSMNEG00000028512SMARCA410099.069Macaca_nemestrina
ENSBTAG00000019220SMARCA410099.009ENSMLEG00000034976SMARCA410098.825Mandrillus_leucophaeus
ENSBTAG00000019220SMARCA49887.539ENSMAMG00000009256smarca4a10087.829Mastacembelus_armatus
ENSBTAG00000019220SMARCA49587.059ENSMAMG00000002841-9887.280Mastacembelus_armatus
ENSBTAG00000019220SMARCA49887.907ENSMZEG00005003889smarca4a10087.882Maylandia_zebra
ENSBTAG00000019220SMARCA49486.271ENSMZEG00005023861-9884.121Maylandia_zebra
ENSBTAG00000019220SMARCA410098.145ENSMAUG00000020731Smarca410098.145Mesocricetus_auratus
ENSBTAG00000019220SMARCA410098.701ENSMICG00000009806SMARCA410098.701Microcebus_murinus
ENSBTAG00000019220SMARCA410098.145ENSMOCG00000022209Smarca410098.145Microtus_ochrogaster
ENSBTAG00000019220SMARCA49384.964ENSMMOG00000007571smarca4a9886.229Mola_mola
ENSBTAG00000019220SMARCA410096.112ENSMODG00000006287SMARCA410096.112Monodelphis_domestica
ENSBTAG00000019220SMARCA49687.310ENSMALG00000003388smarca4a10087.209Monopterus_albus
ENSBTAG00000019220SMARCA48984.203ENSMALG00000021534-8390.807Monopterus_albus
ENSBTAG00000019220SMARCA410098.389MGP_CAROLIEiJ_G0031879Smarca410098.389Mus_caroli
ENSBTAG00000019220SMARCA410098.389ENSMUSG00000032187Smarca410098.389Mus_musculus
ENSBTAG00000019220SMARCA410098.756MGP_PahariEiJ_G0014745Smarca410098.756Mus_pahari
ENSBTAG00000019220SMARCA410098.389MGP_SPRETEiJ_G0033003Smarca410098.389Mus_spretus
ENSBTAG00000019220SMARCA410098.885ENSMPUG00000005711SMARCA410098.885Mustela_putorius_furo
ENSBTAG00000019220SMARCA410098.761ENSMLUG00000004491-10098.761Myotis_lucifugus
ENSBTAG00000019220SMARCA410098.323ENSNGAG00000021852Smarca410098.323Nannospalax_galili
ENSBTAG00000019220SMARCA49386.043ENSNBRG00000011457smarca4a9686.701Neolamprologus_brichardi
ENSBTAG00000019220SMARCA410092.755ENSNLEG00000012389SMARCA49892.755Nomascus_leucogenys
ENSBTAG00000019220SMARCA48093.103ENSOPRG00000000885-7894.286Ochotona_princeps
ENSBTAG00000019220SMARCA410095.921ENSODEG00000017127SMARCA410095.921Octodon_degus
ENSBTAG00000019220SMARCA49888.620ENSONIG00000008196smarca4a10088.903Oreochromis_niloticus
ENSBTAG00000019220SMARCA410084.144ENSONIG00000018040-10083.573Oreochromis_niloticus
ENSBTAG00000019220SMARCA49991.427ENSOCUG00000001787SMARCA49991.427Oryctolagus_cuniculus
ENSBTAG00000019220SMARCA49583.670ENSORLG00000003955-9687.339Oryzias_latipes
ENSBTAG00000019220SMARCA49686.586ENSORLG00000015452smarca4a10086.029Oryzias_latipes
ENSBTAG00000019220SMARCA49583.680ENSORLG00020009728-9787.889Oryzias_latipes_hni
ENSBTAG00000019220SMARCA49686.141ENSORLG00020004611smarca4a10086.012Oryzias_latipes_hni
ENSBTAG00000019220SMARCA49983.242ENSORLG00015007739-9982.663Oryzias_latipes_hsok
ENSBTAG00000019220SMARCA49686.268ENSORLG00015016560smarca4a10086.152Oryzias_latipes_hsok
ENSBTAG00000019220SMARCA49683.406ENSOMEG00000016626-9983.513Oryzias_melastigma
ENSBTAG00000019220SMARCA49886.738ENSOMEG00000007486smarca4a10087.247Oryzias_melastigma
ENSBTAG00000019220SMARCA48996.814ENSOGAG00000016148SMARCA410096.814Otolemur_garnettii
ENSBTAG00000019220SMARCA410098.942ENSOARG00000017454SMARCA410098.942Ovis_aries
ENSBTAG00000019220SMARCA410099.009ENSPPAG00000043191SMARCA410099.009Pan_paniscus
ENSBTAG00000019220SMARCA410098.701ENSPPRG00000000064SMARCA410098.701Panthera_pardus
ENSBTAG00000019220SMARCA48093.958ENSPTIG00000017447SMARCA48193.192Panthera_tigris_altaica
ENSBTAG00000019220SMARCA410099.009ENSPTRG00000010488SMARCA410099.009Pan_troglodytes
ENSBTAG00000019220SMARCA410099.132ENSPANG00000011042SMARCA49999.132Papio_anubis
ENSBTAG00000019220SMARCA410088.278ENSPKIG00000007770SMARCA410088.584Paramormyrops_kingsleyae
ENSBTAG00000019220SMARCA49887.343ENSPKIG00000010087-9887.657Paramormyrops_kingsleyae
ENSBTAG00000019220SMARCA410090.710ENSPSIG00000005547SMARCA410089.678Pelodiscus_sinensis
ENSBTAG00000019220SMARCA410098.268ENSPEMG00000020389Smarca410098.268Peromyscus_maniculatus_bairdii
ENSBTAG00000019220SMARCA410098.017ENSPCIG00000017138SMARCA410098.017Phascolarctos_cinereus
ENSBTAG00000019220SMARCA49885.261ENSPFOG00000007892smarca4a10086.071Poecilia_formosa
ENSBTAG00000019220SMARCA410083.642ENSPFOG00000012930-9983.621Poecilia_formosa
ENSBTAG00000019220SMARCA49985.016ENSPLAG00000018616-9883.631Poecilia_latipinna
ENSBTAG00000019220SMARCA410083.903ENSPLAG00000014294smarca4a10086.131Poecilia_latipinna
ENSBTAG00000019220SMARCA49684.587ENSPMEG00000008929-9884.847Poecilia_mexicana
ENSBTAG00000019220SMARCA49386.239ENSPMEG00000003725smarca4a9787.068Poecilia_mexicana
ENSBTAG00000019220SMARCA49684.178ENSPREG00000014823-9784.746Poecilia_reticulata
ENSBTAG00000019220SMARCA49784.850ENSPREG00000014608smarca4a10086.008Poecilia_reticulata
ENSBTAG00000019220SMARCA410096.964ENSPPYG00000009568SMARCA410096.964Pongo_abelii
ENSBTAG00000019220SMARCA47999.338ENSPCAG00000014054SMARCA47799.338Procavia_capensis
ENSBTAG00000019220SMARCA410098.761ENSPCOG00000023011SMARCA410098.578Propithecus_coquereli
ENSBTAG00000019220SMARCA49596.610ENSPVAG00000007787SMARCA49696.610Pteropus_vampyrus
ENSBTAG00000019220SMARCA49586.723ENSPNYG00000000717smarca4a9688.531Pundamilia_nyererei
ENSBTAG00000019220SMARCA49784.488ENSPNAG00000024136smarca4a8190.767Pygocentrus_nattereri
ENSBTAG00000019220SMARCA49686.384ENSPNAG00000006636-9787.105Pygocentrus_nattereri
ENSBTAG00000019220SMARCA410098.327ENSRNOG00000009271Smarca410098.327Rattus_norvegicus
ENSBTAG00000019220SMARCA410098.823ENSRBIG00000038696SMARCA49998.823Rhinopithecus_bieti
ENSBTAG00000019220SMARCA410098.885ENSRROG00000045509SMARCA410098.885Rhinopithecus_roxellana
ENSBTAG00000019220SMARCA410098.575ENSSBOG00000026896SMARCA49998.758Saimiri_boliviensis_boliviensis
ENSBTAG00000019220SMARCA410097.831ENSSHAG00000001642SMARCA410097.831Sarcophilus_harrisii
ENSBTAG00000019220SMARCA410088.774ENSSFOG00015013823smarca410088.041Scleropages_formosus
ENSBTAG00000019220SMARCA49681.397ENSSFOG00015009921-9191.020Scleropages_formosus
ENSBTAG00000019220SMARCA410081.949ENSSMAG00000014082-9982.546Scophthalmus_maximus
ENSBTAG00000019220SMARCA49886.025ENSSMAG00000003200smarca4a10086.104Scophthalmus_maximus
ENSBTAG00000019220SMARCA49883.881ENSSDUG00000017298smarca4a10084.412Seriola_dumerili
ENSBTAG00000019220SMARCA49986.254ENSSDUG00000005388-9586.886Seriola_dumerili
ENSBTAG00000019220SMARCA49887.081ENSSLDG00000024486smarca4a10087.155Seriola_lalandi_dorsalis
ENSBTAG00000019220SMARCA49586.906ENSSLDG00000023663-9787.614Seriola_lalandi_dorsalis
ENSBTAG00000019220SMARCA464100.000ENSSARG00000013477SMARCA482100.000Sorex_araneus
ENSBTAG00000019220SMARCA49592.203ENSSPUG00000004558SMARCA49892.018Sphenodon_punctatus
ENSBTAG00000019220SMARCA49886.584ENSSPAG00000004248smarca4a10086.369Stegastes_partitus
ENSBTAG00000019220SMARCA49987.328ENSSPAG00000012533-9983.511Stegastes_partitus
ENSBTAG00000019220SMARCA410098.949ENSSSCG00000013629SMARCA410098.949Sus_scrofa
ENSBTAG00000019220SMARCA45390.403ENSTGUG00000015488-9990.403Taeniopygia_guttata
ENSBTAG00000019220SMARCA48981.656ENSTRUG00000004885smarca4a10082.079Takifugu_rubripes
ENSBTAG00000019220SMARCA49582.364ENSTRUG00000001378SMARCA49883.016Takifugu_rubripes
ENSBTAG00000019220SMARCA47385.106ENSTNIG00000004859-10085.106Tetraodon_nigroviridis
ENSBTAG00000019220SMARCA410082.957ENSTNIG00000004536SMARCA410083.547Tetraodon_nigroviridis
ENSBTAG00000019220SMARCA410095.502ENSTTRG00000009519SMARCA410095.502Tursiops_truncatus
ENSBTAG00000019220SMARCA410098.947ENSUAMG00000014661SMARCA410098.947Ursus_americanus
ENSBTAG00000019220SMARCA410097.509ENSUMAG00000022005SMARCA49999.401Ursus_maritimus
ENSBTAG00000019220SMARCA410098.885ENSVVUG00000017820SMARCA49798.885Vulpes_vulpes
ENSBTAG00000019220SMARCA410086.699ENSXETG00000009355smarca49987.685Xenopus_tropicalis
ENSBTAG00000019220SMARCA49886.062ENSXMAG00000006321smarca4a10086.463Xiphophorus_maculatus
ENSBTAG00000019220SMARCA410084.173ENSXMAG00000007030-9984.394Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003682chromatin binding-ISSFunction
GO:0003723RNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISSComponent
GO:0007399nervous system development-IEAProcess
GO:0016514SWI/SNF complex-IEAComponent
GO:0016887ATPase activity-IEAFunction
GO:0042393histone binding-IEAFunction
GO:0043044ATP-dependent chromatin remodeling-IEAProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISSProcess
GO:0071564npBAF complex-ISSComponent
GO:0071565nBAF complex-ISSComponent

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