EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSBTAG00000019735 (Gene tree)
Gene ID
281712
Gene Symbol
CPSF3
Alias
-
Full Name
Bos taurus cleavage and polyadenylation specific factor 3 (CPSF3)%2C mRNA.
Gene Type
protein_coding
Species
Bos_taurus
Status
putative
Strand
Minus strand
Length
33487 bases
Position
chr11:87980285-88013771
Accession
NM_174284
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSBTAP00000026303CPSF73-100_CPF11718.82.9e-5511
ENSBTAP00000026303Beta-CaspPF10996.86.5e-3411
ENSBTAP00000026303Lactamase_BPF00753.271.5e-1811
ENSBTAP00000026303RMMBLPF07521.121.5e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSBTAT00000026303-2354-ENSBTAP00000026303684 (aa)-P79101
Gene Model
Click here to download ENSBTAG00000019735's gene model file
Pathways
Pathway IDPathway NameSource
bta03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000019735's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSBTAG00000019735CPSF37138.386ENSBTAG00000007620INTS118238.386
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSBTAG00000019735CPSF310099.561ENSG00000119203CPSF3100100.000Homo_sapiens
ENSBTAG00000019735CPSF37396.994ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSBTAG00000019735CPSF39985.420ENSAPOG00000022087cpsf39885.420Acanthochromis_polyacanthus
ENSBTAG00000019735CPSF310099.854ENSAMEG00000008493CPSF310099.854Ailuropoda_melanoleuca
ENSBTAG00000019735CPSF39286.825ENSACIG00000023663CPSF39986.825Amphilophus_citrinellus
ENSBTAG00000019735CPSF39282.962ENSACIG00000009846cpsf39982.962Amphilophus_citrinellus
ENSBTAG00000019735CPSF39988.235ENSAOCG00000010077CPSF39888.235Amphiprion_ocellaris
ENSBTAG00000019735CPSF39985.420ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSBTAG00000019735CPSF39988.235ENSAPEG00000021167CPSF39888.235Amphiprion_percula
ENSBTAG00000019735CPSF39985.567ENSAPEG00000019526cpsf39786.728Amphiprion_percula
ENSBTAG00000019735CPSF39985.567ENSATEG00000003959cpsf39885.567Anabas_testudineus
ENSBTAG00000019735CPSF39983.529ENSATEG00000014525CPSF39883.529Anabas_testudineus
ENSBTAG00000019735CPSF39895.536ENSAPLG00000006941CPSF39895.536Anas_platyrhynchos
ENSBTAG00000019735CPSF39392.756ENSACAG00000001759CPSF39992.756Anolis_carolinensis
ENSBTAG00000019735CPSF310092.982ENSANAG00000031254CPSF310092.982Aotus_nancymaae
ENSBTAG00000019735CPSF39785.865ENSACLG00000014484cpsf39985.865Astatotilapia_calliptera
ENSBTAG00000019735CPSF39286.667ENSACLG00000018846CPSF39986.667Astatotilapia_calliptera
ENSBTAG00000019735CPSF39988.382ENSAMXG00000004786cpsf39888.382Astyanax_mexicanus
ENSBTAG00000019735CPSF39159.213WBGene00013460cpsf-38959.213Caenorhabditis_elegans
ENSBTAG00000019735CPSF310099.269ENSCJAG00000006276CPSF310099.269Callithrix_jacchus
ENSBTAG00000019735CPSF310099.854ENSCAFG00000003375CPSF39599.854Canis_familiaris
ENSBTAG00000019735CPSF390100.000ENSCAFG00020026799CPSF3100100.000Canis_lupus_dingo
ENSBTAG00000019735CPSF3100100.000ENSCHIG00000013973CPSF3100100.000Capra_hircus
ENSBTAG00000019735CPSF310099.561ENSTSYG00000002967CPSF310099.561Carlito_syrichta
ENSBTAG00000019735CPSF39898.051ENSCAPG00000013851CPSF310098.051Cavia_aperea
ENSBTAG00000019735CPSF310098.099ENSCPOG00000011299CPSF310098.099Cavia_porcellus
ENSBTAG00000019735CPSF310099.415ENSCCAG00000036730CPSF310099.415Cebus_capucinus
ENSBTAG00000019735CPSF310096.934ENSCATG00000014770CPSF399100.000Cercocebus_atys
ENSBTAG00000019735CPSF310097.661ENSCLAG00000002727CPSF310097.661Chinchilla_lanigera
ENSBTAG00000019735CPSF310091.813ENSCSAG00000007125CPSF310091.813Chlorocebus_sabaeus
ENSBTAG00000019735CPSF386100.000ENSCHOG00000000180CPSF38572.281Choloepus_hoffmanni
ENSBTAG00000019735CPSF39995.894ENSCPBG00000014074CPSF39995.894Chrysemys_picta_bellii
ENSBTAG00000019735CPSF39968.029ENSCING00000007214-9868.029Ciona_intestinalis
ENSBTAG00000019735CPSF310086.404ENSCANG00000034435CPSF310086.404Colobus_angolensis_palliatus
ENSBTAG00000019735CPSF310098.977ENSCGRG00001013134Cpsf310098.977Cricetulus_griseus_chok1gshd
ENSBTAG00000019735CPSF310098.977ENSCGRG00000018319Cpsf310098.977Cricetulus_griseus_crigri
ENSBTAG00000019735CPSF39986.931ENSCSEG00000002021CPSF39986.708Cynoglossus_semilaevis
ENSBTAG00000019735CPSF39988.529ENSCVAG00000015067CPSF39888.529Cyprinodon_variegatus
ENSBTAG00000019735CPSF39989.118ENSDARG00000027649cpsf39889.118Danio_rerio
ENSBTAG00000019735CPSF310098.102ENSDNOG00000008940CPSF39598.102Dasypus_novemcinctus
ENSBTAG00000019735CPSF39599.078ENSDORG00000014263Cpsf310099.078Dipodomys_ordii
ENSBTAG00000019735CPSF39967.599FBgn0261065Cpsf739867.599Drosophila_melanogaster
ENSBTAG00000019735CPSF39585.714ENSETEG00000003893CPSF310085.714Echinops_telfairi
ENSBTAG00000019735CPSF39978.797ENSEBUG00000009018cpsf39878.940Eptatretus_burgeri
ENSBTAG00000019735CPSF310099.854ENSEASG00005003970CPSF310099.854Equus_asinus_asinus
ENSBTAG00000019735CPSF310099.854ENSECAG00000019911CPSF310099.854Equus_caballus
ENSBTAG00000019735CPSF310084.064ENSEEUG00000015422CPSF310084.064Erinaceus_europaeus
ENSBTAG00000019735CPSF39988.235ENSELUG00000013775cpsf39888.235Esox_lucius
ENSBTAG00000019735CPSF3100100.000ENSFCAG00000007852CPSF3100100.000Felis_catus
ENSBTAG00000019735CPSF39595.363ENSFALG00000006572CPSF310095.363Ficedula_albicollis
ENSBTAG00000019735CPSF39997.507ENSFDAG00000006317CPSF39997.507Fukomys_damarensis
ENSBTAG00000019735CPSF35969.024ENSFHEG00000012186CPSF39969.024Fundulus_heteroclitus
ENSBTAG00000019735CPSF39985.125ENSFHEG00000014774cpsf39885.125Fundulus_heteroclitus
ENSBTAG00000019735CPSF39986.765ENSGMOG00000003157cpsf39886.765Gadus_morhua
ENSBTAG00000019735CPSF39995.154ENSGALG00000016424CPSF39995.154Gallus_gallus
ENSBTAG00000019735CPSF39282.989ENSGAFG00000019449cpsf39982.989Gambusia_affinis
ENSBTAG00000019735CPSF39988.365ENSGAFG00000008016CPSF39888.365Gambusia_affinis
ENSBTAG00000019735CPSF36894.004ENSGAGG00000025583CPSF39394.004Gopherus_agassizii
ENSBTAG00000019735CPSF310097.282ENSGGOG00000001757CPSF310099.685Gorilla_gorilla
ENSBTAG00000019735CPSF39985.756ENSHBUG00000001188cpsf39985.756Haplochromis_burtoni
ENSBTAG00000019735CPSF35981.975ENSHBUG00000014332CPSF39981.975Haplochromis_burtoni
ENSBTAG00000019735CPSF310096.930ENSHGLG00000000666CPSF39996.930Heterocephalus_glaber_female
ENSBTAG00000019735CPSF310096.930ENSHGLG00100007765CPSF39996.930Heterocephalus_glaber_male
ENSBTAG00000019735CPSF39985.044ENSHCOG00000007251cpsf39985.044Hippocampus_comes
ENSBTAG00000019735CPSF39986.471ENSHCOG00000015957CPSF39786.471Hippocampus_comes
ENSBTAG00000019735CPSF39987.206ENSIPUG00000023488cpsf39887.206Ictalurus_punctatus
ENSBTAG00000019735CPSF310099.269ENSSTOG00000004476CPSF310099.269Ictidomys_tridecemlineatus
ENSBTAG00000019735CPSF310097.953ENSJJAG00000023415Cpsf310097.953Jaculus_jaculus
ENSBTAG00000019735CPSF39987.794ENSKMAG00000007317CPSF39887.794Kryptolebias_marmoratus
ENSBTAG00000019735CPSF39984.831ENSKMAG00000002806cpsf39884.831Kryptolebias_marmoratus
ENSBTAG00000019735CPSF35580.161ENSLBEG00000015018-9980.161Labrus_bergylta
ENSBTAG00000019735CPSF39979.295ENSLBEG00000020569cpsf39479.295Labrus_bergylta
ENSBTAG00000019735CPSF39589.352ENSLBEG00000013492CPSF39889.352Labrus_bergylta
ENSBTAG00000019735CPSF39983.800ENSLACG00000008308CPSF39883.800Latimeria_chalumnae
ENSBTAG00000019735CPSF39989.280ENSLOCG00000016823cpsf39889.280Lepisosteus_oculatus
ENSBTAG00000019735CPSF39998.088ENSLAFG00000009467CPSF310098.088Loxodonta_africana
ENSBTAG00000019735CPSF310099.561ENSMFAG00000001339CPSF310099.561Macaca_fascicularis
ENSBTAG00000019735CPSF39599.536ENSMMUG00000018038CPSF310099.536Macaca_mulatta
ENSBTAG00000019735CPSF310086.842ENSMNEG00000039447CPSF310086.842Macaca_nemestrina
ENSBTAG00000019735CPSF310099.708ENSMLEG00000026825CPSF310099.708Mandrillus_leucophaeus
ENSBTAG00000019735CPSF39985.862ENSMAMG00000003076cpsf39885.862Mastacembelus_armatus
ENSBTAG00000019735CPSF39285.443ENSMAMG00000008835CPSF39985.443Mastacembelus_armatus
ENSBTAG00000019735CPSF39988.824ENSMZEG00005006258CPSF39888.824Maylandia_zebra
ENSBTAG00000019735CPSF39985.756ENSMZEG00005014358cpsf39985.756Maylandia_zebra
ENSBTAG00000019735CPSF39895.202ENSMGAG00000013995CPSF310095.202Meleagris_gallopavo
ENSBTAG00000019735CPSF35597.340ENSMAUG00000000166Cpsf310097.340Mesocricetus_auratus
ENSBTAG00000019735CPSF310094.006ENSMICG00000002363CPSF310094.006Microcebus_murinus
ENSBTAG00000019735CPSF310094.298ENSMOCG00000020067Cpsf310094.298Microtus_ochrogaster
ENSBTAG00000019735CPSF39482.481ENSMMOG00000018212CPSF39882.481Mola_mola
ENSBTAG00000019735CPSF38071.779ENSMMOG00000011923CPSF38477.857Mola_mola
ENSBTAG00000019735CPSF310096.382ENSMODG00000014703CPSF310096.382Monodelphis_domestica
ENSBTAG00000019735CPSF39383.594ENSMALG00000011474CPSF39983.594Monopterus_albus
ENSBTAG00000019735CPSF39986.050ENSMALG00000016416cpsf39986.050Monopterus_albus
ENSBTAG00000019735CPSF310098.684MGP_CAROLIEiJ_G0017640Cpsf310098.684Mus_caroli
ENSBTAG00000019735CPSF310098.684ENSMUSG00000054309Cpsf310098.684Mus_musculus
ENSBTAG00000019735CPSF310098.538MGP_PahariEiJ_G0029397Cpsf310098.538Mus_pahari
ENSBTAG00000019735CPSF310098.684MGP_SPRETEiJ_G0018481Cpsf310098.684Mus_spretus
ENSBTAG00000019735CPSF310099.123ENSMPUG00000013213CPSF310099.123Mustela_putorius_furo
ENSBTAG00000019735CPSF310098.686ENSMLUG00000010636CPSF310098.686Myotis_lucifugus
ENSBTAG00000019735CPSF310098.830ENSNGAG00000019836Cpsf310098.830Nannospalax_galili
ENSBTAG00000019735CPSF39286.667ENSNBRG00000010525CPSF39986.667Neolamprologus_brichardi
ENSBTAG00000019735CPSF39985.316ENSNBRG00000004770cpsf39985.316Neolamprologus_brichardi
ENSBTAG00000019735CPSF310099.561ENSNLEG00000013359CPSF310099.561Nomascus_leucogenys
ENSBTAG00000019735CPSF310065.497ENSMEUG00000013117-10065.497Notamacropus_eugenii
ENSBTAG00000019735CPSF310090.058ENSOPRG00000008902CPSF310090.058Ochotona_princeps
ENSBTAG00000019735CPSF310097.222ENSODEG00000003129CPSF310097.222Octodon_degus
ENSBTAG00000019735CPSF39985.903ENSONIG00000018812cpsf39985.903Oreochromis_niloticus
ENSBTAG00000019735CPSF38296.809ENSOANG00000008577CPSF310096.809Ornithorhynchus_anatinus
ENSBTAG00000019735CPSF310099.415ENSOCUG00000003728CPSF310099.415Oryctolagus_cuniculus
ENSBTAG00000019735CPSF39983.700ENSORLG00000018854cpsf39983.700Oryzias_latipes
ENSBTAG00000019735CPSF39983.554ENSORLG00020013331cpsf39983.554Oryzias_latipes_hni
ENSBTAG00000019735CPSF39983.700ENSORLG00015011017cpsf39983.700Oryzias_latipes_hsok
ENSBTAG00000019735CPSF39983.847ENSOMEG00000010647cpsf39483.847Oryzias_melastigma
ENSBTAG00000019735CPSF310089.474ENSOGAG00000001680CPSF310089.474Otolemur_garnettii
ENSBTAG00000019735CPSF3100100.000ENSOARG00000015073CPSF3100100.000Ovis_aries
ENSBTAG00000019735CPSF310099.708ENSPPAG00000042457CPSF310099.708Pan_paniscus
ENSBTAG00000019735CPSF310099.708ENSPPRG00000016790CPSF310099.708Panthera_pardus
ENSBTAG00000019735CPSF39999.706ENSPTIG00000003920CPSF310099.685Panthera_tigris_altaica
ENSBTAG00000019735CPSF310099.708ENSPTRG00000011638CPSF310099.708Pan_troglodytes
ENSBTAG00000019735CPSF310099.415ENSPANG00000016798CPSF310099.415Papio_anubis
ENSBTAG00000019735CPSF39989.706ENSPKIG00000023646cpsf39989.457Paramormyrops_kingsleyae
ENSBTAG00000019735CPSF39994.143ENSPSIG00000016144CPSF310094.143Pelodiscus_sinensis
ENSBTAG00000019735CPSF35979.506ENSPMGG00000015311CPSF39979.506Periophthalmus_magnuspinnatus
ENSBTAG00000019735CPSF38385.340ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSBTAG00000019735CPSF310098.392ENSPEMG00000017668Cpsf310098.392Peromyscus_maniculatus_bairdii
ENSBTAG00000019735CPSF37890.317ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSBTAG00000019735CPSF39897.901ENSPCIG00000009823CPSF39898.006Phascolarctos_cinereus
ENSBTAG00000019735CPSF39984.897ENSPFOG00000015922cpsf39984.897Poecilia_formosa
ENSBTAG00000019735CPSF39988.071ENSPFOG00000010418-9888.071Poecilia_formosa
ENSBTAG00000019735CPSF35981.188ENSPLAG00000021300-9981.188Poecilia_latipinna
ENSBTAG00000019735CPSF39984.897ENSPLAG00000000882cpsf39984.897Poecilia_latipinna
ENSBTAG00000019735CPSF39985.044ENSPMEG00000018309cpsf39985.044Poecilia_mexicana
ENSBTAG00000019735CPSF39982.769ENSPREG00000004482CPSF39882.769Poecilia_reticulata
ENSBTAG00000019735CPSF39282.830ENSPREG00000014875cpsf39982.830Poecilia_reticulata
ENSBTAG00000019735CPSF310095.175ENSPPYG00000012666CPSF310095.175Pongo_abelii
ENSBTAG00000019735CPSF39564.209ENSPCAG00000015042CPSF310064.209Procavia_capensis
ENSBTAG00000019735CPSF38892.199ENSPCOG00000023016CPSF39892.199Propithecus_coquereli
ENSBTAG00000019735CPSF39999.560ENSPVAG00000005324CPSF39999.560Pteropus_vampyrus
ENSBTAG00000019735CPSF39985.756ENSPNYG00000004405cpsf39985.756Pundamilia_nyererei
ENSBTAG00000019735CPSF37991.529ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSBTAG00000019735CPSF39987.647ENSPNAG00000023060cpsf39887.647Pygocentrus_nattereri
ENSBTAG00000019735CPSF39998.680ENSRNOG00000052418Cpsf39998.680Rattus_norvegicus
ENSBTAG00000019735CPSF310093.713ENSRBIG00000041615CPSF39995.054Rhinopithecus_bieti
ENSBTAG00000019735CPSF310099.708ENSRROG00000033792CPSF310099.708Rhinopithecus_roxellana
ENSBTAG00000019735CPSF39340.805YLR277CYSH19540.805Saccharomyces_cerevisiae
ENSBTAG00000019735CPSF310093.333ENSSBOG00000027263CPSF310093.333Saimiri_boliviensis_boliviensis
ENSBTAG00000019735CPSF310098.099ENSSHAG00000007024CPSF310098.099Sarcophilus_harrisii
ENSBTAG00000019735CPSF39989.721ENSSFOG00015002108cpsf39989.721Scleropages_formosus
ENSBTAG00000019735CPSF39587.963ENSSMAG00000020534CPSF39587.963Scophthalmus_maximus
ENSBTAG00000019735CPSF39988.382ENSSDUG00000018498CPSF39888.382Seriola_dumerili
ENSBTAG00000019735CPSF39985.903ENSSDUG00000002828cpsf39685.903Seriola_dumerili
ENSBTAG00000019735CPSF39988.382ENSSLDG00000005234CPSF39888.382Seriola_lalandi_dorsalis
ENSBTAG00000019735CPSF39985.903ENSSLDG00000008469cpsf39685.903Seriola_lalandi_dorsalis
ENSBTAG00000019735CPSF310081.725ENSSARG00000005186CPSF310081.725Sorex_araneus
ENSBTAG00000019735CPSF39892.697ENSSPUG00000015525CPSF39792.697Sphenodon_punctatus
ENSBTAG00000019735CPSF39985.567ENSSPAG00000018579cpsf39885.567Stegastes_partitus
ENSBTAG00000019735CPSF39988.088ENSSPAG00000002906CPSF39888.088Stegastes_partitus
ENSBTAG00000019735CPSF39999.707ENSSSCG00000020799CPSF39999.707Sus_scrofa
ENSBTAG00000019735CPSF39995.448ENSTGUG00000013016CPSF39995.448Taeniopygia_guttata
ENSBTAG00000019735CPSF39985.147ENSTRUG00000007030cpsf39785.147Takifugu_rubripes
ENSBTAG00000019735CPSF35973.219ENSTRUG00000013905CPSF39973.219Takifugu_rubripes
ENSBTAG00000019735CPSF38593.699ENSTBEG00000002707CPSF38593.699Tupaia_belangeri
ENSBTAG00000019735CPSF388100.000ENSTTRG00000000861CPSF388100.000Tursiops_truncatus
ENSBTAG00000019735CPSF39996.774ENSUAMG00000007535CPSF39896.774Ursus_americanus
ENSBTAG00000019735CPSF39599.845ENSUMAG00000003676CPSF310099.845Ursus_maritimus
ENSBTAG00000019735CPSF39396.215ENSVPAG00000008041CPSF310096.215Vicugna_pacos
ENSBTAG00000019735CPSF310099.854ENSVVUG00000002194CPSF310099.854Vulpes_vulpes
ENSBTAG00000019735CPSF39990.015ENSXETG00000008263cpsf39890.015Xenopus_tropicalis
ENSBTAG00000019735CPSF39985.191ENSXCOG00000019695cpsf39985.191Xiphophorus_couchianus
ENSBTAG00000019735CPSF35479.784ENSXCOG00000000957-8779.784Xiphophorus_couchianus
ENSBTAG00000019735CPSF39984.897ENSXMAG00000009784cpsf39984.897Xiphophorus_maculatus
ENSBTAG00000019735CPSF39988.218ENSXMAG00000027291CPSF39888.218Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-ISSFunction
GO:0004521endoribonuclease activity-ISSFunction
GO:0005515protein binding22617423.IPIFunction
GO:0005847mRNA cleavage and polyadenylation specificity factor complex-ISSComponent
GO:0006398mRNA 3'-end processing by stem-loop binding and cleavage-ISSProcess
GO:00084095'-3' exonuclease activity-ISSFunction
GO:0046872metal ion binding-IEAFunction
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic-IEAProcess

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