EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000019942 (Gene tree)
Gene ID: 511286
Gene Symbol: PABPC5
Alias: -
Full Name: Bos taurus poly(A) binding protein cytoplasmic 5 (PABPC5)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 2023 bases
Position: chrX:39337586-39339608
Accession: NM_001192289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000026566	RRM_5	PF13893.6	8.1e-11	1	2
ENSBTAP00000026566	RRM_5	PF13893.6	8.1e-11	2	2
ENSBTAP00000026566	RRM_1	PF00076.22	2.3e-78	1	4
ENSBTAP00000026566	RRM_1	PF00076.22	2.3e-78	2	4
ENSBTAP00000026566	RRM_1	PF00076.22	2.3e-78	3	4
ENSBTAP00000026566	RRM_1	PF00076.22	2.3e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000026566	-	1474	-	ENSBTAP00000026566	382 (aa)	XP_024843643	F1N4Q4

Gene Model

Click here to download ENSBTAG00000019942's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG
bta03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000019942's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000019942	PABPC5	93	58.163	ENSBTAG00000052491	-	92	57.812
ENSBTAG00000019942	PABPC5	94	30.435	ENSBTAG00000000613	ELAVL1	96	30.435
ENSBTAG00000019942	PABPC5	96	64.011	ENSBTAG00000046902	PABPC4L	98	64.045
ENSBTAG00000019942	PABPC5	83	51.980	ENSBTAG00000016849	PABPC1L	65	51.980
ENSBTAG00000019942	PABPC5	93	63.975	ENSBTAG00000055300	-	95	64.286
ENSBTAG00000019942	PABPC5	96	56.039	ENSBTAG00000050902	-	93	57.292
ENSBTAG00000019942	PABPC5	94	35.802	ENSBTAG00000046348	ELAVL2	89	35.802
ENSBTAG00000019942	PABPC5	89	62.338	ENSBTAG00000048536	-	98	62.338
ENSBTAG00000019942	PABPC5	95	67.493	ENSBTAG00000017125	PABPC4	58	67.697
ENSBTAG00000019942	PABPC5	97	64.420	ENSBTAG00000046358	PABPC1	58	65.449

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000019942	PABPC5	99	96.850	ENSG00000174740	PABPC5	99	96.850	Homo_sapiens
ENSBTAG00000019942	PABPC5	99	96.850	ENSAMEG00000020114	PABPC5	100	96.850	Ailuropoda_melanoleuca
ENSBTAG00000019942	PABPC5	99	96.850	ENSANAG00000005063	PABPC5	99	96.850	Aotus_nancymaae
ENSBTAG00000019942	PABPC5	99	96.325	ENSCJAG00000003665	PABPC5	99	96.325	Callithrix_jacchus
ENSBTAG00000019942	PABPC5	100	96.335	ENSCAFG00000017452	PABPC5	100	96.335	Canis_familiaris
ENSBTAG00000019942	PABPC5	100	98.429	ENSCHIG00000019004	PABPC5	100	98.429	Capra_hircus
ENSBTAG00000019942	PABPC5	100	96.335	ENSTSYG00000036351	PABPC5	100	96.335	Carlito_syrichta
ENSBTAG00000019942	PABPC5	99	88.482	ENSCAPG00000010714	PABPC5	100	88.482	Cavia_aperea
ENSBTAG00000019942	PABPC5	100	94.241	ENSCPOG00000002555	PABPC5	100	94.241	Cavia_porcellus
ENSBTAG00000019942	PABPC5	99	96.850	ENSCCAG00000032154	PABPC5	99	96.850	Cebus_capucinus
ENSBTAG00000019942	PABPC5	99	96.588	ENSCATG00000043083	PABPC5	99	96.588	Cercocebus_atys
ENSBTAG00000019942	PABPC5	100	94.503	ENSCLAG00000000647	PABPC5	100	94.503	Chinchilla_lanigera
ENSBTAG00000019942	PABPC5	99	96.588	ENSCSAG00000000065	PABPC5	99	96.588	Chlorocebus_sabaeus
ENSBTAG00000019942	PABPC5	99	96.588	ENSCANG00000011473	PABPC5	99	96.588	Colobus_angolensis_palliatus
ENSBTAG00000019942	PABPC5	100	93.194	ENSCGRG00000018699	Pabpc5	100	93.194	Cricetulus_griseus_crigri
ENSBTAG00000019942	PABPC5	100	78.329	ENSETEG00000011832	PABPC5	100	78.329	Echinops_telfairi
ENSBTAG00000019942	PABPC5	100	97.120	ENSEASG00005014396	PABPC5	100	97.120	Equus_asinus_asinus
ENSBTAG00000019942	PABPC5	100	97.120	ENSECAG00000003452	PABPC5	100	97.120	Equus_caballus
ENSBTAG00000019942	PABPC5	100	96.597	ENSFCAG00000004998	PABPC5	100	96.597	Felis_catus
ENSBTAG00000019942	PABPC5	100	95.550	ENSFDAG00000000126	PABPC5	100	95.550	Fukomys_damarensis
ENSBTAG00000019942	PABPC5	99	96.850	ENSGGOG00000007622	PABPC5	99	96.850	Gorilla_gorilla
ENSBTAG00000019942	PABPC5	95	96.330	ENSJJAG00000011960	Pabpc5	100	96.330	Jaculus_jaculus
ENSBTAG00000019942	PABPC5	99	96.588	ENSMFAG00000024561	PABPC5	99	96.588	Macaca_fascicularis
ENSBTAG00000019942	PABPC5	99	96.588	ENSMMUG00000011562	PABPC5	99	96.588	Macaca_mulatta
ENSBTAG00000019942	PABPC5	99	96.588	ENSMNEG00000037604	PABPC5	99	96.588	Macaca_nemestrina
ENSBTAG00000019942	PABPC5	99	96.588	ENSMLEG00000028318	PABPC5	99	96.588	Mandrillus_leucophaeus
ENSBTAG00000019942	PABPC5	100	95.550	ENSMICG00000041706	PABPC5	100	95.550	Microcebus_murinus
ENSBTAG00000019942	PABPC5	100	94.764	ENSMOCG00000001554	Pabpc5	100	94.764	Microtus_ochrogaster
ENSBTAG00000019942	PABPC5	99	92.895	MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.895	Mus_caroli
ENSBTAG00000019942	PABPC5	99	93.421	ENSMUSG00000034732	Pabpc5	99	93.421	Mus_musculus
ENSBTAG00000019942	PABPC5	100	93.717	MGP_PahariEiJ_G0031908	Pabpc5	100	93.717	Mus_pahari
ENSBTAG00000019942	PABPC5	99	93.421	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.421	Mus_spretus
ENSBTAG00000019942	PABPC5	100	95.812	ENSMPUG00000018465	PABPC5	100	95.812	Mustela_putorius_furo
ENSBTAG00000019942	PABPC5	100	95.288	ENSMLUG00000008244	PABPC5	100	95.288	Myotis_lucifugus
ENSBTAG00000019942	PABPC5	95	94.954	ENSNGAG00000004371	Pabpc5	100	94.954	Nannospalax_galili
ENSBTAG00000019942	PABPC5	99	96.850	ENSNLEG00000035086	PABPC5	99	96.850	Nomascus_leucogenys
ENSBTAG00000019942	PABPC5	99	97.285	ENSOPRG00000000856	PABPC5	100	97.285	Ochotona_princeps
ENSBTAG00000019942	PABPC5	100	96.597	ENSOCUG00000010919	PABPC5	100	96.597	Oryctolagus_cuniculus
ENSBTAG00000019942	PABPC5	100	95.550	ENSOGAG00000006882	PABPC5	100	95.550	Otolemur_garnettii
ENSBTAG00000019942	PABPC5	100	98.691	ENSOARG00000010260	PABPC5	100	98.691	Ovis_aries
ENSBTAG00000019942	PABPC5	99	96.588	ENSPPAG00000007378	PABPC5	99	96.588	Pan_paniscus
ENSBTAG00000019942	PABPC5	100	96.597	ENSPPRG00000010742	PABPC5	100	96.597	Panthera_pardus
ENSBTAG00000019942	PABPC5	100	96.597	ENSPTIG00000001480	PABPC5	100	96.597	Panthera_tigris_altaica
ENSBTAG00000019942	PABPC5	99	96.850	ENSPTRG00000022078	PABPC5	99	96.850	Pan_troglodytes
ENSBTAG00000019942	PABPC5	99	96.588	ENSPANG00000018282	PABPC5	99	96.588	Papio_anubis
ENSBTAG00000019942	PABPC5	100	94.241	ENSPEMG00000000171	Pabpc5	100	94.241	Peromyscus_maniculatus_bairdii
ENSBTAG00000019942	PABPC5	99	96.850	ENSPPYG00000020526	PABPC5	99	96.850	Pongo_abelii
ENSBTAG00000019942	PABPC5	99	96.727	ENSPCAG00000015577	PABPC5	100	96.727	Procavia_capensis
ENSBTAG00000019942	PABPC5	100	96.335	ENSPCOG00000000676	PABPC5	100	96.335	Propithecus_coquereli
ENSBTAG00000019942	PABPC5	100	96.859	ENSPVAG00000006465	PABPC5	100	96.859	Pteropus_vampyrus
ENSBTAG00000019942	PABPC5	100	93.455	ENSRNOG00000003354	Pabpc5	100	93.455	Rattus_norvegicus
ENSBTAG00000019942	PABPC5	99	96.588	ENSRBIG00000011760	PABPC5	99	96.588	Rhinopithecus_bieti
ENSBTAG00000019942	PABPC5	99	96.588	ENSRROG00000036708	PABPC5	99	96.588	Rhinopithecus_roxellana
ENSBTAG00000019942	PABPC5	99	96.850	ENSSBOG00000008658	PABPC5	99	96.850	Saimiri_boliviensis_boliviensis
ENSBTAG00000019942	PABPC5	100	94.764	ENSSARG00000014012	PABPC5	100	94.764	Sorex_araneus
ENSBTAG00000019942	PABPC5	100	96.859	ENSSSCG00000040194	PABPC5	100	96.859	Sus_scrofa
ENSBTAG00000019942	PABPC5	100	97.120	ENSTBEG00000016482	PABPC5	100	97.120	Tupaia_belangeri
ENSBTAG00000019942	PABPC5	100	96.335	ENSUAMG00000013627	PABPC5	100	96.335	Ursus_americanus
ENSBTAG00000019942	PABPC5	100	96.073	ENSUMAG00000023934	PABPC5	100	96.073	Ursus_maritimus
ENSBTAG00000019942	PABPC5	100	97.120	ENSVPAG00000001063	PABPC5	100	97.120	Vicugna_pacos
ENSBTAG00000019942	PABPC5	100	96.597	ENSVVUG00000013172	PABPC5	100	96.597	Vulpes_vulpes