EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000020440 (Gene tree)
Gene ID: 101910000
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 10896 bases
Position: chr25:36972761-36983656
Accession: 101910000
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000073709	PPR	PF01535.20	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000027241	-	2286	-	ENSBTAP00000027241	761 (aa)	-	E1BNM9
ENSBTAT00000066472	-	3427	XM_005225035	ENSBTAP00000073709	808 (aa)	XP_005225092	UPI000383F412

Gene Model

Click here to download ENSBTAG00000020440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000020440's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000020440	-	87	77.589	ENSG00000106246	PTCD1	100	77.305	Homo_sapiens
ENSBTAG00000020440	-	87	77.652	ENSG00000248919	ATP5MF-PTCD1	94	77.369	Homo_sapiens
ENSBTAG00000020440	-	75	46.242	ENSAPOG00000010679	ptcd1	90	45.130	Acanthochromis_polyacanthus
ENSBTAG00000020440	-	87	81.471	ENSAMEG00000006224	-	93	81.471	Ailuropoda_melanoleuca
ENSBTAG00000020440	-	76	49.123	ENSACIG00000017861	ptcd1	87	48.889	Amphilophus_citrinellus
ENSBTAG00000020440	-	79	46.512	ENSAOCG00000020741	-	88	46.130	Amphiprion_ocellaris
ENSBTAG00000020440	-	75	46.293	ENSAOCG00000022617	ptcd1	86	46.723	Amphiprion_ocellaris
ENSBTAG00000020440	-	80	46.451	ENSAPEG00000022632	ptcd1	88	46.071	Amphiprion_percula
ENSBTAG00000020440	-	78	49.604	ENSATEG00000007016	ptcd1	85	49.605	Anabas_testudineus
ENSBTAG00000020440	-	74	60.768	ENSAPLG00000006862	-	93	60.265	Anas_platyrhynchos
ENSBTAG00000020440	-	94	53.333	ENSACAG00000012871	-	99	53.333	Anolis_carolinensis
ENSBTAG00000020440	-	85	77.358	ENSANAG00000035790	-	100	77.358	Aotus_nancymaae
ENSBTAG00000020440	-	75	47.896	ENSACLG00000002824	ptcd1	84	47.735	Astatotilapia_calliptera
ENSBTAG00000020440	-	76	48.056	ENSAMXG00000037292	ptcd1	88	47.812	Astyanax_mexicanus
ENSBTAG00000020440	-	87	77.447	ENSCJAG00000015815	-	100	77.447	Callithrix_jacchus
ENSBTAG00000020440	-	89	80.471	ENSCAFG00000015055	-	95	80.471	Canis_familiaris
ENSBTAG00000020440	-	89	80.498	ENSCAFG00020014480	-	95	80.498	Canis_lupus_dingo
ENSBTAG00000020440	-	87	93.883	ENSCHIG00000027000	-	99	93.883	Capra_hircus
ENSBTAG00000020440	-	87	78.865	ENSTSYG00000029495	-	100	78.865	Carlito_syrichta
ENSBTAG00000020440	-	81	75.532	ENSCAPG00000014660	-	100	75.532	Cavia_aperea
ENSBTAG00000020440	-	87	75.177	ENSCPOG00000001780	-	100	75.177	Cavia_porcellus
ENSBTAG00000020440	-	87	76.771	ENSCCAG00000034025	-	100	76.771	Cebus_capucinus
ENSBTAG00000020440	-	87	76.629	ENSCATG00000040859	-	100	76.912	Cercocebus_atys
ENSBTAG00000020440	-	86	77.778	ENSCLAG00000006354	-	100	77.163	Chinchilla_lanigera
ENSBTAG00000020440	-	80	76.471	ENSCSAG00000017794	-	95	76.780	Chlorocebus_sabaeus
ENSBTAG00000020440	-	84	54.905	ENSCPBG00000020866	-	97	54.905	Chrysemys_picta_bellii
ENSBTAG00000020440	-	87	76.705	ENSCANG00000023441	-	100	76.989	Colobus_angolensis_palliatus
ENSBTAG00000020440	-	87	73.609	ENSCGRG00001023686	Ptcd1	99	73.181	Cricetulus_griseus_chok1gshd
ENSBTAG00000020440	-	86	73.333	ENSCGRG00000015031	Ptcd1	99	72.908	Cricetulus_griseus_crigri
ENSBTAG00000020440	-	81	45.619	ENSCSEG00000002378	ptcd1	88	45.619	Cynoglossus_semilaevis
ENSBTAG00000020440	-	75	47.947	ENSCVAG00000015826	ptcd1	83	47.455	Cyprinodon_variegatus
ENSBTAG00000020440	-	74	48.590	ENSCVAG00000003621	ptcd1	88	47.508	Cyprinodon_variegatus
ENSBTAG00000020440	-	75	51.461	ENSDARG00000076176	ptcd1	88	51.461	Danio_rerio
ENSBTAG00000020440	-	87	78.169	ENSDNOG00000009957	-	100	78.169	Dasypus_novemcinctus
ENSBTAG00000020440	-	86	74.459	ENSDORG00000000740	Ptcd1	99	74.352	Dipodomys_ordii
ENSBTAG00000020440	-	80	40.942	ENSEBUG00000014515	ptcd1	99	42.466	Eptatretus_burgeri
ENSBTAG00000020440	-	87	84.507	ENSEASG00005002480	-	100	84.507	Equus_asinus_asinus
ENSBTAG00000020440	-	87	84.507	ENSECAG00000016617	-	100	84.507	Equus_caballus
ENSBTAG00000020440	-	79	45.015	ENSELUG00000016517	ptcd1	90	45.161	Esox_lucius
ENSBTAG00000020440	-	87	81.831	ENSFCAG00000015069	-	100	81.831	Felis_catus
ENSBTAG00000020440	-	76	60.568	ENSFALG00000013803	-	94	58.041	Ficedula_albicollis
ENSBTAG00000020440	-	87	75.921	ENSFDAG00000006393	-	100	75.637	Fukomys_damarensis
ENSBTAG00000020440	-	67	46.909	ENSFHEG00000012491	ptcd1	90	46.715	Fundulus_heteroclitus
ENSBTAG00000020440	-	72	47.759	ENSGMOG00000007639	ptcd1	91	47.150	Gadus_morhua
ENSBTAG00000020440	-	75	59.040	ENSGALG00000004711	-	88	58.176	Gallus_gallus
ENSBTAG00000020440	-	74	48.264	ENSGAFG00000013175	ptcd1	84	47.603	Gambusia_affinis
ENSBTAG00000020440	-	74	49.513	ENSGACG00000016607	ptcd1	91	49.752	Gasterosteus_aculeatus
ENSBTAG00000020440	-	75	57.561	ENSGAGG00000021832	-	99	52.975	Gopherus_agassizii
ENSBTAG00000020440	-	87	77.415	ENSGGOG00000015123	-	99	77.131	Gorilla_gorilla
ENSBTAG00000020440	-	75	47.735	ENSHBUG00000018275	ptcd1	84	47.573	Haplochromis_burtoni
ENSBTAG00000020440	-	87	76.771	ENSHGLG00000017621	-	100	76.346	Heterocephalus_glaber_female
ENSBTAG00000020440	-	87	76.771	ENSHGLG00100007218	-	100	76.346	Heterocephalus_glaber_male
ENSBTAG00000020440	-	73	47.359	ENSHCOG00000010784	ptcd1	82	47.368	Hippocampus_comes
ENSBTAG00000020440	-	87	76.479	ENSSTOG00000001682	-	100	76.479	Ictidomys_tridecemlineatus
ENSBTAG00000020440	-	87	73.617	ENSJJAG00000000319	Ptcd1	100	73.333	Jaculus_jaculus
ENSBTAG00000020440	-	81	45.946	ENSKMAG00000008708	ptcd1	90	45.946	Kryptolebias_marmoratus
ENSBTAG00000020440	-	82	46.796	ENSLBEG00000008061	ptcd1	89	45.821	Labrus_bergylta
ENSBTAG00000020440	-	75	58.075	ENSLACG00000011172	ptcd1	84	58.891	Latimeria_chalumnae
ENSBTAG00000020440	-	81	53.166	ENSLOCG00000004833	ptcd1	97	53.249	Lepisosteus_oculatus
ENSBTAG00000020440	-	87	74.402	ENSLAFG00000002588	-	100	74.402	Loxodonta_africana
ENSBTAG00000020440	-	87	76.487	ENSMFAG00000041324	-	100	76.771	Macaca_fascicularis
ENSBTAG00000020440	-	87	76.412	ENSMMUG00000030408	-	100	76.629	Macaca_mulatta
ENSBTAG00000020440	-	87	76.487	ENSMNEG00000043786	-	100	76.771	Macaca_nemestrina
ENSBTAG00000020440	-	87	56.638	ENSMLEG00000031179	-	100	58.815	Mandrillus_leucophaeus
ENSBTAG00000020440	-	83	47.788	ENSMAMG00000007623	ptcd1	91	47.345	Mastacembelus_armatus
ENSBTAG00000020440	-	75	47.896	ENSMZEG00005012722	ptcd1	84	47.735	Maylandia_zebra
ENSBTAG00000020440	-	86	55.837	ENSMGAG00000004211	-	93	55.696	Meleagris_gallopavo
ENSBTAG00000020440	-	87	79.149	ENSMICG00000017428	-	100	79.149	Microcebus_murinus
ENSBTAG00000020440	-	76	46.204	ENSMMOG00000020243	ptcd1	92	45.719	Mola_mola
ENSBTAG00000020440	-	86	59.647	ENSMODG00000001350	-	99	59.239	Monodelphis_domestica
ENSBTAG00000020440	-	81	47.655	ENSMALG00000018442	ptcd1	88	47.655	Monopterus_albus
ENSBTAG00000020440	-	86	75.753	MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.897	Mus_caroli
ENSBTAG00000020440	-	86	75.323	ENSMUSG00000029624	Ptcd1	99	75.466	Mus_musculus
ENSBTAG00000020440	-	86	75.931	MGP_PahariEiJ_G0024580	Ptcd1	99	75.540	Mus_pahari
ENSBTAG00000020440	-	86	75.897	MGP_SPRETEiJ_G0029012	Ptcd1	99	76.184	Mus_spretus
ENSBTAG00000020440	-	87	79.859	ENSMPUG00000016518	-	100	80.704	Mustela_putorius_furo
ENSBTAG00000020440	-	87	83.427	ENSMLUG00000010994	-	94	83.567	Myotis_lucifugus
ENSBTAG00000020440	-	78	47.418	ENSNBRG00000010079	ptcd1	88	48.089	Neolamprologus_brichardi
ENSBTAG00000020440	-	87	80.399	ENSNLEG00000011060	-	99	80.399	Nomascus_leucogenys
ENSBTAG00000020440	-	85	60.342	ENSMEUG00000006930	-	99	60.200	Notamacropus_eugenii
ENSBTAG00000020440	-	78	77.442	ENSOPRG00000013647	-	90	77.442	Ochotona_princeps
ENSBTAG00000020440	-	75	46.926	ENSONIG00000003168	ptcd1	99	46.602	Oreochromis_niloticus
ENSBTAG00000020440	-	70	57.319	ENSOANG00000007728	-	84	53.456	Ornithorhynchus_anatinus
ENSBTAG00000020440	-	87	75.424	ENSOCUG00000010584	-	98	75.282	Oryctolagus_cuniculus
ENSBTAG00000020440	-	77	47.642	ENSORLG00000009275	ptcd1	88	47.170	Oryzias_latipes
ENSBTAG00000020440	-	77	47.327	ENSORLG00020000988	ptcd1	88	46.698	Oryzias_latipes_hni
ENSBTAG00000020440	-	77	47.087	ENSORLG00015010557	ptcd1	88	46.614	Oryzias_latipes_hsok
ENSBTAG00000020440	-	74	48.208	ENSOMEG00000020627	ptcd1	87	47.488	Oryzias_melastigma
ENSBTAG00000020440	-	86	77.110	ENSOGAG00000010877	-	100	77.110	Otolemur_garnettii
ENSBTAG00000020440	-	87	87.926	ENSOARG00000018676	-	100	87.926	Ovis_aries
ENSBTAG00000020440	-	87	77.021	ENSPPAG00000036024	-	100	76.879	Pan_paniscus
ENSBTAG00000020440	-	87	82.102	ENSPPRG00000003478	-	100	82.102	Panthera_pardus
ENSBTAG00000020440	-	87	76.879	ENSPTRG00000019452	-	100	76.738	Pan_troglodytes
ENSBTAG00000020440	-	87	76.629	ENSPANG00000016730	-	100	76.912	Papio_anubis
ENSBTAG00000020440	-	83	50.885	ENSPKIG00000014215	ptcd1	95	50.590	Paramormyrops_kingsleyae
ENSBTAG00000020440	-	74	59.000	ENSPSIG00000011184	-	100	59.000	Pelodiscus_sinensis
ENSBTAG00000020440	-	64	42.639	ENSPMAG00000009667	ptcd1	100	41.651	Petromyzon_marinus
ENSBTAG00000020440	-	87	57.995	ENSPCIG00000024778	-	99	57.995	Phascolarctos_cinereus
ENSBTAG00000020440	-	75	47.581	ENSPFOG00000004458	ptcd1	84	47.419	Poecilia_formosa
ENSBTAG00000020440	-	74	47.769	ENSPLAG00000011051	ptcd1	84	47.769	Poecilia_latipinna
ENSBTAG00000020440	-	75	47.419	ENSPMEG00000020547	ptcd1	84	47.258	Poecilia_mexicana
ENSBTAG00000020440	-	73	48.414	ENSPREG00000000059	ptcd1	89	45.840	Poecilia_reticulata
ENSBTAG00000020440	-	82	78.313	ENSPPYG00000017377	-	100	78.012	Pongo_abelii
ENSBTAG00000020440	-	71	81.560	ENSPCAG00000001852	-	89	81.560	Procavia_capensis
ENSBTAG00000020440	-	87	80.284	ENSPCOG00000018596	-	100	80.284	Propithecus_coquereli
ENSBTAG00000020440	-	58	83.000	ENSPVAG00000007529	-	73	83.000	Pteropus_vampyrus
ENSBTAG00000020440	-	75	47.896	ENSPNYG00000019993	ptcd1	84	47.896	Pundamilia_nyererei
ENSBTAG00000020440	-	81	50.374	ENSPNAG00000014931	ptcd1	97	49.349	Pygocentrus_nattereri
ENSBTAG00000020440	-	86	73.707	ENSRNOG00000000987	Ptcd1	99	73.563	Rattus_norvegicus
ENSBTAG00000020440	-	87	77.273	ENSRBIG00000043393	-	100	77.557	Rhinopithecus_bieti
ENSBTAG00000020440	-	87	76.989	ENSRROG00000036420	-	100	77.273	Rhinopithecus_roxellana
ENSBTAG00000020440	-	87	77.872	ENSSBOG00000024114	-	100	77.872	Saimiri_boliviensis_boliviensis
ENSBTAG00000020440	-	86	57.162	ENSSHAG00000011376	-	99	61.256	Sarcophilus_harrisii
ENSBTAG00000020440	-	77	52.566	ENSSFOG00015007909	ptcd1	85	52.411	Scleropages_formosus
ENSBTAG00000020440	-	76	46.388	ENSSMAG00000000218	ptcd1	95	46.377	Scophthalmus_maximus
ENSBTAG00000020440	-	85	45.911	ENSSDUG00000015671	ptcd1	95	45.833	Seriola_dumerili
ENSBTAG00000020440	-	82	46.508	ENSSLDG00000014261	ptcd1	93	45.401	Seriola_lalandi_dorsalis
ENSBTAG00000020440	-	82	54.453	ENSSPUG00000003540	-	91	54.599	Sphenodon_punctatus
ENSBTAG00000020440	-	80	48.545	ENSSPAG00000011049	ptcd1	87	48.545	Stegastes_partitus
ENSBTAG00000020440	-	81	85.100	ENSSSCG00000007622	-	99	84.858	Sus_scrofa
ENSBTAG00000020440	-	76	60.325	ENSTGUG00000007563	-	99	60.650	Taeniopygia_guttata
ENSBTAG00000020440	-	74	48.756	ENSTRUG00000013471	ptcd1	81	48.259	Takifugu_rubripes
ENSBTAG00000020440	-	79	46.296	ENSTNIG00000008271	ptcd1	90	46.071	Tetraodon_nigroviridis
ENSBTAG00000020440	-	87	76.836	ENSTBEG00000011021	-	100	76.554	Tupaia_belangeri
ENSBTAG00000020440	-	87	84.495	ENSTTRG00000003006	-	100	84.495	Tursiops_truncatus
ENSBTAG00000020440	-	87	81.303	ENSUAMG00000008049	-	100	81.303	Ursus_americanus
ENSBTAG00000020440	-	87	81.223	ENSVVUG00000008836	-	100	81.223	Vulpes_vulpes
ENSBTAG00000020440	-	78	52.582	ENSXETG00000009891	ptcd1	92	52.315	Xenopus_tropicalis
ENSBTAG00000020440	-	75	47.068	ENSXMAG00000015540	ptcd1	84	46.906	Xiphophorus_maculatus