EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000020505 (Gene tree)
Gene ID: 540582
Gene Symbol: SBNO1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 42205 bases
Position: chr17:52247385-52289589
Accession: 34308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000059333	ResIII	PF04851.15	1.1e-07	1	1
ENSBTAP00000027325	ResIII	PF04851.15	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000076592	-	4077	-	ENSBTAP00000059333	1358 (aa)	XP_010812306	UPI000572E7CC
ENSBTAT00000027325	-	4182	-	ENSBTAP00000027325	1393 (aa)	XP_002694612	E1BMP8

Gene Model

Click here to download ENSBTAG00000020505's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000020505's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000020505	SBNO1	71	67.574	ENSBTAG00000020780	SBNO2	72	67.574

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000020505	SBNO1	99	98.132	ENSG00000139697	SBNO1	99	98.132	Homo_sapiens
ENSBTAG00000020505	SBNO1	85	81.271	ENSAPOG00000003196	sbno1	98	81.357	Acanthochromis_polyacanthus
ENSBTAG00000020505	SBNO1	99	98.280	ENSAMEG00000015151	SBNO1	99	98.280	Ailuropoda_melanoleuca
ENSBTAG00000020505	SBNO1	99	76.657	ENSACIG00000008088	sbno1	99	76.424	Amphilophus_citrinellus
ENSBTAG00000020505	SBNO1	99	75.386	ENSAOCG00000014859	sbno1	99	75.439	Amphiprion_ocellaris
ENSBTAG00000020505	SBNO1	99	75.386	ENSAPEG00000006069	sbno1	99	75.439	Amphiprion_percula
ENSBTAG00000020505	SBNO1	99	76.137	ENSATEG00000006667	sbno1	100	76.277	Anabas_testudineus
ENSBTAG00000020505	SBNO1	98	92.387	ENSAPLG00000015674	SBNO1	99	91.960	Anas_platyrhynchos
ENSBTAG00000020505	SBNO1	98	89.822	ENSACAG00000015441	SBNO1	88	88.994	Anolis_carolinensis
ENSBTAG00000020505	SBNO1	99	97.845	ENSANAG00000029958	-	99	98.188	Aotus_nancymaae
ENSBTAG00000020505	SBNO1	99	76.208	ENSACLG00000024913	sbno1	100	76.003	Astatotilapia_calliptera
ENSBTAG00000020505	SBNO1	99	79.460	ENSAMXG00000019473	sbno1	100	79.531	Astyanax_mexicanus
ENSBTAG00000020505	SBNO1	99	97.989	ENSCJAG00000016599	SBNO1	99	97.989	Callithrix_jacchus
ENSBTAG00000020505	SBNO1	99	98.494	ENSCAFG00000007503	SBNO1	99	98.679	Canis_familiaris
ENSBTAG00000020505	SBNO1	99	97.773	ENSCAFG00020015363	SBNO1	99	97.773	Canis_lupus_dingo
ENSBTAG00000020505	SBNO1	100	99.785	ENSCHIG00000008382	SBNO1	100	99.785	Capra_hircus
ENSBTAG00000020505	SBNO1	99	98.674	ENSTSYG00000012749	SBNO1	99	98.674	Carlito_syrichta
ENSBTAG00000020505	SBNO1	97	97.731	ENSCAPG00000000384	SBNO1	99	98.045	Cavia_aperea
ENSBTAG00000020505	SBNO1	99	97.486	ENSCPOG00000008109	SBNO1	99	97.861	Cavia_porcellus
ENSBTAG00000020505	SBNO1	99	93.611	ENSCCAG00000035316	SBNO1	99	93.611	Cebus_capucinus
ENSBTAG00000020505	SBNO1	98	97.440	ENSCATG00000008239	SBNO1	98	98.732	Cercocebus_atys
ENSBTAG00000020505	SBNO1	99	97.486	ENSCLAG00000008995	SBNO1	99	98.732	Chinchilla_lanigera
ENSBTAG00000020505	SBNO1	85	98.617	ENSCSAG00000002064	SBNO1	99	98.617	Chlorocebus_sabaeus
ENSBTAG00000020505	SBNO1	96	94.904	ENSCHOG00000008814	SBNO1	96	94.904	Choloepus_hoffmanni
ENSBTAG00000020505	SBNO1	98	92.568	ENSCPBG00000025968	SBNO1	99	91.960	Chrysemys_picta_bellii
ENSBTAG00000020505	SBNO1	99	92.611	ENSCANG00000042688	-	99	92.539	Colobus_angolensis_palliatus
ENSBTAG00000020505	SBNO1	100	97.344	ENSCGRG00001017470	Sbno1	100	97.344	Cricetulus_griseus_chok1gshd
ENSBTAG00000020505	SBNO1	100	97.344	ENSCGRG00000004756	Sbno1	100	97.344	Cricetulus_griseus_crigri
ENSBTAG00000020505	SBNO1	99	74.684	ENSCSEG00000011919	sbno1	100	75.473	Cynoglossus_semilaevis
ENSBTAG00000020505	SBNO1	99	75.772	ENSCVAG00000007038	sbno1	100	76.101	Cyprinodon_variegatus
ENSBTAG00000020505	SBNO1	99	79.485	ENSDARG00000099080	sbno1	99	79.557	Danio_rerio
ENSBTAG00000020505	SBNO1	99	97.868	ENSDNOG00000017147	SBNO1	98	98.561	Dasypus_novemcinctus
ENSBTAG00000020505	SBNO1	99	84.361	ENSDORG00000015261	Sbno1	99	84.361	Dipodomys_ordii
ENSBTAG00000020505	SBNO1	93	90.686	ENSETEG00000005620	SBNO1	93	90.686	Echinops_telfairi
ENSBTAG00000020505	SBNO1	74	64.327	ENSEBUG00000013823	sbno1	93	63.584	Eptatretus_burgeri
ENSBTAG00000020505	SBNO1	50	99.555	ENSEASG00005012595	-	92	99.555	Equus_asinus_asinus
ENSBTAG00000020505	SBNO1	99	99.066	ENSECAG00000006127	SBNO1	99	99.110	Equus_caballus
ENSBTAG00000020505	SBNO1	83	97.814	ENSEEUG00000003793	SBNO1	83	97.814	Erinaceus_europaeus
ENSBTAG00000020505	SBNO1	100	78.045	ENSELUG00000002886	sbno1	100	78.116	Esox_lucius
ENSBTAG00000020505	SBNO1	99	98.994	ENSFCAG00000015331	SBNO1	99	98.994	Felis_catus
ENSBTAG00000020505	SBNO1	98	92.240	ENSFALG00000009273	SBNO1	99	91.960	Ficedula_albicollis
ENSBTAG00000020505	SBNO1	100	95.908	ENSFDAG00000014232	SBNO1	100	95.908	Fukomys_damarensis
ENSBTAG00000020505	SBNO1	99	75.935	ENSFHEG00000007360	sbno1	100	75.983	Fundulus_heteroclitus
ENSBTAG00000020505	SBNO1	97	78.191	ENSGMOG00000018229	sbno1	99	78.992	Gadus_morhua
ENSBTAG00000020505	SBNO1	88	92.614	ENSGALG00000003392	SBNO1	99	92.451	Gallus_gallus
ENSBTAG00000020505	SBNO1	99	77.299	ENSGAFG00000003960	sbno1	100	76.067	Gambusia_affinis
ENSBTAG00000020505	SBNO1	97	78.983	ENSGACG00000015633	sbno1	99	78.947	Gasterosteus_aculeatus
ENSBTAG00000020505	SBNO1	98	91.661	ENSGAGG00000001065	SBNO1	99	94.384	Gopherus_agassizii
ENSBTAG00000020505	SBNO1	99	97.989	ENSGGOG00000015000	SBNO1	99	97.989	Gorilla_gorilla
ENSBTAG00000020505	SBNO1	99	70.408	ENSHBUG00000011910	sbno1	100	70.298	Haplochromis_burtoni
ENSBTAG00000020505	SBNO1	99	97.701	ENSHGLG00000014165	-	99	98.913	Heterocephalus_glaber_female
ENSBTAG00000020505	SBNO1	93	84.980	ENSHCOG00000003246	sbno1	95	84.980	Hippocampus_comes
ENSBTAG00000020505	SBNO1	99	79.060	ENSIPUG00000015830	Sbno1	98	79.060	Ictalurus_punctatus
ENSBTAG00000020505	SBNO1	99	98.600	ENSSTOG00000023221	SBNO1	99	99.275	Ictidomys_tridecemlineatus
ENSBTAG00000020505	SBNO1	99	97.773	ENSJJAG00000001741	Sbno1	99	97.773	Jaculus_jaculus
ENSBTAG00000020505	SBNO1	99	76.906	ENSKMAG00000009696	sbno1	100	76.573	Kryptolebias_marmoratus
ENSBTAG00000020505	SBNO1	100	75.262	ENSLBEG00000007623	sbno1	100	76.187	Labrus_bergylta
ENSBTAG00000020505	SBNO1	100	81.312	ENSLACG00000017227	SBNO1	99	83.968	Latimeria_chalumnae
ENSBTAG00000020505	SBNO1	100	82.115	ENSLOCG00000005725	sbno1	98	81.960	Lepisosteus_oculatus
ENSBTAG00000020505	SBNO1	99	97.486	ENSLAFG00000002135	SBNO1	99	97.486	Loxodonta_africana
ENSBTAG00000020505	SBNO1	99	97.989	ENSMFAG00000031429	SBNO1	99	97.989	Macaca_fascicularis
ENSBTAG00000020505	SBNO1	99	97.989	ENSMMUG00000011496	SBNO1	99	97.989	Macaca_mulatta
ENSBTAG00000020505	SBNO1	99	96.264	ENSMLEG00000033260	SBNO1	99	98.732	Mandrillus_leucophaeus
ENSBTAG00000020505	SBNO1	99	75.915	ENSMAMG00000005473	sbno1	100	76.056	Mastacembelus_armatus
ENSBTAG00000020505	SBNO1	98	92.313	ENSMGAG00000003274	SBNO1	99	92.370	Meleagris_gallopavo
ENSBTAG00000020505	SBNO1	50	93.276	ENSMAUG00000004834	-	100	98.193	Mesocricetus_auratus
ENSBTAG00000020505	SBNO1	99	97.414	ENSMICG00000006573	-	99	98.549	Microcebus_murinus
ENSBTAG00000020505	SBNO1	100	93.692	ENSMOCG00000009390	Sbno1	100	96.975	Microtus_ochrogaster
ENSBTAG00000020505	SBNO1	99	73.502	ENSMMOG00000008691	sbno1	99	73.612	Mola_mola
ENSBTAG00000020505	SBNO1	99	94.899	ENSMODG00000012470	SBNO1	98	94.899	Monodelphis_domestica
ENSBTAG00000020505	SBNO1	99	75.542	ENSMALG00000001056	sbno1	100	75.542	Monopterus_albus
ENSBTAG00000020505	SBNO1	99	97.198	MGP_CAROLIEiJ_G0027749	Sbno1	100	98.193	Mus_caroli
ENSBTAG00000020505	SBNO1	99	97.701	ENSMUSG00000038095	Sbno1	100	98.494	Mus_musculus
ENSBTAG00000020505	SBNO1	99	97.773	MGP_PahariEiJ_G0024329	Sbno1	100	98.193	Mus_pahari
ENSBTAG00000020505	SBNO1	99	97.486	MGP_SPRETEiJ_G0028747	Sbno1	100	98.494	Mus_spretus
ENSBTAG00000020505	SBNO1	99	98.779	ENSMPUG00000001658	SBNO1	99	98.779	Mustela_putorius_furo
ENSBTAG00000020505	SBNO1	99	98.348	ENSMLUG00000017159	SBNO1	99	98.348	Myotis_lucifugus
ENSBTAG00000020505	SBNO1	99	98.132	ENSNGAG00000012620	Sbno1	98	99.408	Nannospalax_galili
ENSBTAG00000020505	SBNO1	99	76.298	ENSNBRG00000019189	sbno1	100	76.093	Neolamprologus_brichardi
ENSBTAG00000020505	SBNO1	99	94.253	ENSNLEG00000001502	SBNO1	99	95.479	Nomascus_leucogenys
ENSBTAG00000020505	SBNO1	61	85.443	ENSMEUG00000008768	-	93	88.608	Notamacropus_eugenii
ENSBTAG00000020505	SBNO1	99	94.476	ENSOPRG00000011054	SBNO1	99	94.405	Ochotona_princeps
ENSBTAG00000020505	SBNO1	99	97.486	ENSODEG00000009997	SBNO1	99	97.486	Octodon_degus
ENSBTAG00000020505	SBNO1	99	75.649	ENSONIG00000015348	sbno1	100	75.734	Oreochromis_niloticus
ENSBTAG00000020505	SBNO1	98	96.645	ENSOCUG00000002441	SBNO1	95	96.645	Oryctolagus_cuniculus
ENSBTAG00000020505	SBNO1	99	75.193	ENSORLG00000001593	sbno1	100	75.193	Oryzias_latipes
ENSBTAG00000020505	SBNO1	99	75.316	ENSORLG00020015216	sbno1	100	75.176	Oryzias_latipes_hni
ENSBTAG00000020505	SBNO1	99	75.316	ENSORLG00015002726	sbno1	100	75.246	Oryzias_latipes_hsok
ENSBTAG00000020505	SBNO1	99	75.906	ENSOMEG00000019313	sbno1	99	75.551	Oryzias_melastigma
ENSBTAG00000020505	SBNO1	50	90.129	ENSOGAG00000010781	-	100	95.482	Otolemur_garnettii
ENSBTAG00000020505	SBNO1	100	99.570	ENSOARG00000004404	SBNO1	100	99.570	Ovis_aries
ENSBTAG00000020505	SBNO1	99	98.132	ENSPPAG00000024635	SBNO1	99	98.132	Pan_paniscus
ENSBTAG00000020505	SBNO1	99	98.994	ENSPPRG00000022092	SBNO1	99	98.994	Panthera_pardus
ENSBTAG00000020505	SBNO1	99	98.779	ENSPTIG00000017803	SBNO1	99	98.779	Panthera_tigris_altaica
ENSBTAG00000020505	SBNO1	99	98.204	ENSPTRG00000005597	SBNO1	99	98.204	Pan_troglodytes
ENSBTAG00000020505	SBNO1	99	97.989	ENSPANG00000011640	SBNO1	99	98.732	Papio_anubis
ENSBTAG00000020505	SBNO1	99	80.443	ENSPKIG00000001441	sbno1	100	80.670	Paramormyrops_kingsleyae
ENSBTAG00000020505	SBNO1	98	91.886	ENSPSIG00000009572	-	99	91.202	Pelodiscus_sinensis
ENSBTAG00000020505	SBNO1	92	88.034	ENSPSIG00000009256	-	100	88.034	Pelodiscus_sinensis
ENSBTAG00000020505	SBNO1	100	97.200	ENSPEMG00000016087	Sbno1	100	97.200	Peromyscus_maniculatus_bairdii
ENSBTAG00000020505	SBNO1	99	94.042	ENSPCIG00000010985	SBNO1	99	94.257	Phascolarctos_cinereus
ENSBTAG00000020505	SBNO1	99	76.355	ENSPFOG00000005069	sbno1	100	76.364	Poecilia_formosa
ENSBTAG00000020505	SBNO1	99	76.214	ENSPLAG00000015015	sbno1	100	76.401	Poecilia_latipinna
ENSBTAG00000020505	SBNO1	99	76.301	ENSPMEG00000021212	sbno1	100	76.310	Poecilia_mexicana
ENSBTAG00000020505	SBNO1	99	75.949	ENSPREG00000017746	sbno1	100	75.961	Poecilia_reticulata
ENSBTAG00000020505	SBNO1	99	97.701	ENSPPYG00000005084	SBNO1	99	97.701	Pongo_abelii
ENSBTAG00000020505	SBNO1	89	93.151	ENSPCAG00000008634	SBNO1	88	93.122	Procavia_capensis
ENSBTAG00000020505	SBNO1	99	98.491	ENSPCOG00000024277	SBNO1	99	98.491	Propithecus_coquereli
ENSBTAG00000020505	SBNO1	87	98.807	ENSPVAG00000015304	SBNO1	87	98.807	Pteropus_vampyrus
ENSBTAG00000020505	SBNO1	99	75.966	ENSPNYG00000004291	sbno1	100	75.840	Pundamilia_nyererei
ENSBTAG00000020505	SBNO1	99	79.362	ENSPNAG00000015622	sbno1	100	79.220	Pygocentrus_nattereri
ENSBTAG00000020505	SBNO1	100	97.487	ENSRNOG00000001064	Sbno1	100	97.509	Rattus_norvegicus
ENSBTAG00000020505	SBNO1	99	98.132	ENSRROG00000034230	SBNO1	99	98.732	Rhinopithecus_roxellana
ENSBTAG00000020505	SBNO1	97	92.215	ENSSBOG00000015422	SBNO1	99	92.852	Saimiri_boliviensis_boliviensis
ENSBTAG00000020505	SBNO1	99	80.733	ENSSFOG00015019025	sbno1	100	80.938	Scleropages_formosus
ENSBTAG00000020505	SBNO1	99	76.214	ENSSMAG00000013640	sbno1	100	76.425	Scophthalmus_maximus
ENSBTAG00000020505	SBNO1	99	75.840	ENSSDUG00000023480	sbno1	100	75.840	Seriola_dumerili
ENSBTAG00000020505	SBNO1	99	75.770	ENSSLDG00000007928	sbno1	100	75.770	Seriola_lalandi_dorsalis
ENSBTAG00000020505	SBNO1	89	98.865	ENSSARG00000002594	SBNO1	89	98.865	Sorex_araneus
ENSBTAG00000020505	SBNO1	98	91.517	ENSSPUG00000012640	SBNO1	99	91.016	Sphenodon_punctatus
ENSBTAG00000020505	SBNO1	99	75.262	ENSSPAG00000016244	sbno1	100	75.332	Stegastes_partitus
ENSBTAG00000020505	SBNO1	99	99.042	ENSSSCG00000009776	SBNO1	99	99.042	Sus_scrofa
ENSBTAG00000020505	SBNO1	98	92.167	ENSTGUG00000005380	SBNO1	99	91.888	Taeniopygia_guttata
ENSBTAG00000020505	SBNO1	99	77.256	ENSTRUG00000018490	sbno1	99	77.223	Takifugu_rubripes
ENSBTAG00000020505	SBNO1	56	70.777	ENSTNIG00000013506	sbno1	99	70.844	Tetraodon_nigroviridis
ENSBTAG00000020505	SBNO1	99	98.707	ENSUAMG00000019671	SBNO1	99	98.707	Ursus_americanus
ENSBTAG00000020505	SBNO1	99	98.707	ENSUMAG00000004002	SBNO1	99	98.707	Ursus_maritimus
ENSBTAG00000020505	SBNO1	95	95.556	ENSVPAG00000007024	SBNO1	95	95.556	Vicugna_pacos
ENSBTAG00000020505	SBNO1	99	98.707	ENSVVUG00000027807	SBNO1	99	98.707	Vulpes_vulpes
ENSBTAG00000020505	SBNO1	99	82.441	ENSXETG00000031930	SBNO1	99	82.143	Xenopus_tropicalis
ENSBTAG00000020505	SBNO1	89	74.502	ENSXCOG00000011607	sbno1	95	75.160	Xiphophorus_couchianus
ENSBTAG00000020505	SBNO1	99	76.844	ENSXMAG00000002140	sbno1	100	76.101	Xiphophorus_maculatus