EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000020856 (Gene tree)
Gene ID: 505814
Gene Symbol: HFM1
Alias: -
Full Name: Bos taurus HFM1%2C ATP dependent DNA helicase homolog (HFM1)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 108167 bases
Position: chr3:51980905-52089071
Accession: NM_001205576
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000027789	ResIII	PF04851.15	9.5e-12	1	1
ENSBTAP00000027789	DEAD	PF00270.29	1.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000027789	-	4314	-	ENSBTAP00000027789	1437 (aa)	-	F1MFR1

Gene Model

Click here to download ENSBTAG00000020856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000020856's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000020856	HFM1	58	31.181	ENSBTAG00000000848	SNRNP200	75	31.181
ENSBTAG00000020856	HFM1	60	32.349	ENSBTAG00000020482	ASCC3	66	32.349

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000020856	HFM1	100	85.278	ENSG00000162669	HFM1	100	85.278	Homo_sapiens
ENSBTAG00000020856	HFM1	58	66.627	ENSAPOG00000005304	hfm1	94	66.627	Acanthochromis_polyacanthus
ENSBTAG00000020856	HFM1	100	87.778	ENSAMEG00000000432	HFM1	100	87.778	Ailuropoda_melanoleuca
ENSBTAG00000020856	HFM1	73	59.322	ENSACIG00000021553	hfm1	94	59.322	Amphilophus_citrinellus
ENSBTAG00000020856	HFM1	58	66.906	ENSAOCG00000022839	hfm1	96	69.357	Amphiprion_ocellaris
ENSBTAG00000020856	HFM1	58	66.547	ENSAPEG00000014316	hfm1	96	69.406	Amphiprion_percula
ENSBTAG00000020856	HFM1	66	64.773	ENSATEG00000019181	hfm1	80	64.176	Anabas_testudineus
ENSBTAG00000020856	HFM1	100	60.370	ENSAPLG00000013639	HFM1	100	60.370	Anas_platyrhynchos
ENSBTAG00000020856	HFM1	100	81.900	ENSANAG00000029513	HFM1	100	81.900	Aotus_nancymaae
ENSBTAG00000020856	HFM1	70	60.314	ENSACLG00000009033	hfm1	96	65.348	Astatotilapia_calliptera
ENSBTAG00000020856	HFM1	92	52.737	ENSAMXG00000006108	hfm1	89	52.737	Astyanax_mexicanus
ENSBTAG00000020856	HFM1	100	83.819	ENSCJAG00000001843	HFM1	100	83.819	Callithrix_jacchus
ENSBTAG00000020856	HFM1	100	86.032	ENSCAFG00000020187	HFM1	100	86.032	Canis_familiaris
ENSBTAG00000020856	HFM1	100	83.079	ENSTSYG00000014250	HFM1	100	83.079	Carlito_syrichta
ENSBTAG00000020856	HFM1	99	78.234	ENSCPOG00000007421	HFM1	99	78.234	Cavia_porcellus
ENSBTAG00000020856	HFM1	100	83.403	ENSCCAG00000033206	HFM1	100	83.403	Cebus_capucinus
ENSBTAG00000020856	HFM1	100	84.792	ENSCATG00000030987	HFM1	100	84.792	Cercocebus_atys
ENSBTAG00000020856	HFM1	100	79.313	ENSCLAG00000005173	HFM1	99	79.313	Chinchilla_lanigera
ENSBTAG00000020856	HFM1	68	92.105	ENSCHOG00000011824	-	77	92.105	Choloepus_hoffmanni
ENSBTAG00000020856	HFM1	100	72.230	ENSCGRG00001016995	Hfm1	100	72.230	Cricetulus_griseus_chok1gshd
ENSBTAG00000020856	HFM1	100	75.850	ENSCGRG00000017181	Hfm1	100	75.850	Cricetulus_griseus_crigri
ENSBTAG00000020856	HFM1	71	60.038	ENSCSEG00000017659	hfm1	94	59.885	Cynoglossus_semilaevis
ENSBTAG00000020856	HFM1	76	56.036	ENSDARG00000104288	hfm1	96	56.036	Danio_rerio
ENSBTAG00000020856	HFM1	100	79.852	ENSDNOG00000004776	HFM1	100	79.852	Dasypus_novemcinctus
ENSBTAG00000020856	HFM1	100	76.200	ENSDORG00000014661	Hfm1	100	76.200	Dipodomys_ordii
ENSBTAG00000020856	HFM1	70	86.149	ENSEASG00005015424	HFM1	97	86.149	Equus_asinus_asinus
ENSBTAG00000020856	HFM1	100	85.253	ENSECAG00000024039	HFM1	100	85.253	Equus_caballus
ENSBTAG00000020856	HFM1	63	67.473	ENSELUG00000018944	hfm1	97	67.473	Esox_lucius
ENSBTAG00000020856	HFM1	100	87.222	ENSFCAG00000029116	HFM1	100	87.222	Felis_catus
ENSBTAG00000020856	HFM1	100	60.164	ENSFALG00000001781	HFM1	100	60.646	Ficedula_albicollis
ENSBTAG00000020856	HFM1	100	77.934	ENSFDAG00000020816	HFM1	100	77.934	Fukomys_damarensis
ENSBTAG00000020856	HFM1	66	60.960	ENSGMOG00000017436	hfm1	100	60.960	Gadus_morhua
ENSBTAG00000020856	HFM1	70	61.942	ENSGAFG00000018093	hfm1	92	67.315	Gambusia_affinis
ENSBTAG00000020856	HFM1	66	62.019	ENSGACG00000015686	hfm1	99	62.019	Gasterosteus_aculeatus
ENSBTAG00000020856	HFM1	100	85.000	ENSGGOG00000038524	HFM1	100	85.000	Gorilla_gorilla
ENSBTAG00000020856	HFM1	70	61.531	ENSHBUG00000007309	hfm1	97	60.301	Haplochromis_burtoni
ENSBTAG00000020856	HFM1	57	64.583	ENSHCOG00000019632	hfm1	97	64.583	Hippocampus_comes
ENSBTAG00000020856	HFM1	65	65.702	ENSIPUG00000017020	hfm1	92	66.706	Ictalurus_punctatus
ENSBTAG00000020856	HFM1	100	76.250	ENSJJAG00000017198	Hfm1	100	76.250	Jaculus_jaculus
ENSBTAG00000020856	HFM1	62	62.639	ENSKMAG00000002282	hfm1	91	62.639	Kryptolebias_marmoratus
ENSBTAG00000020856	HFM1	71	60.488	ENSLBEG00000006759	hfm1	96	65.990	Labrus_bergylta
ENSBTAG00000020856	HFM1	66	71.014	ENSLACG00000010698	HFM1	100	66.761	Latimeria_chalumnae
ENSBTAG00000020856	HFM1	72	64.650	ENSLOCG00000004931	hfm1	97	64.745	Lepisosteus_oculatus
ENSBTAG00000020856	HFM1	52	89.098	ENSLAFG00000015903	-	99	89.098	Loxodonta_africana
ENSBTAG00000020856	HFM1	100	82.007	ENSMFAG00000003649	HFM1	100	82.007	Macaca_fascicularis
ENSBTAG00000020856	HFM1	100	84.306	ENSMMUG00000006819	HFM1	100	84.306	Macaca_mulatta
ENSBTAG00000020856	HFM1	54	70.475	ENSMAMG00000004623	hfm1	97	66.908	Mastacembelus_armatus
ENSBTAG00000020856	HFM1	70	60.314	ENSMZEG00005004679	hfm1	96	65.348	Maylandia_zebra
ENSBTAG00000020856	HFM1	54	77.551	ENSMGAG00000008437	HFM1	98	77.551	Meleagris_gallopavo
ENSBTAG00000020856	HFM1	100	75.728	ENSMAUG00000018858	Hfm1	100	75.728	Mesocricetus_auratus
ENSBTAG00000020856	HFM1	100	83.761	ENSMICG00000037935	HFM1	100	83.761	Microcebus_murinus
ENSBTAG00000020856	HFM1	100	74.375	ENSMOCG00000014812	Hfm1	100	74.375	Microtus_ochrogaster
ENSBTAG00000020856	HFM1	62	64.013	ENSMMOG00000006148	hfm1	96	64.576	Mola_mola
ENSBTAG00000020856	HFM1	70	61.089	ENSMALG00000002401	hfm1	99	64.626	Monopterus_albus
ENSBTAG00000020856	HFM1	95	71.499	MGP_CAROLIEiJ_G0027496	Hfm1	100	71.499	Mus_caroli
ENSBTAG00000020856	HFM1	100	74.861	ENSMUSG00000043410	Hfm1	100	74.861	Mus_musculus
ENSBTAG00000020856	HFM1	100	74.931	MGP_PahariEiJ_G0017268	Hfm1	100	74.931	Mus_pahari
ENSBTAG00000020856	HFM1	100	74.583	MGP_SPRETEiJ_G0028495	Hfm1	100	74.583	Mus_spretus
ENSBTAG00000020856	HFM1	100	83.300	ENSMPUG00000004594	HFM1	100	83.300	Mustela_putorius_furo
ENSBTAG00000020856	HFM1	100	83.564	ENSMLUG00000010200	HFM1	100	83.564	Myotis_lucifugus
ENSBTAG00000020856	HFM1	70	57.632	ENSNBRG00000002910	hfm1	97	65.455	Neolamprologus_brichardi
ENSBTAG00000020856	HFM1	100	80.692	ENSNLEG00000010285	HFM1	100	80.692	Nomascus_leucogenys
ENSBTAG00000020856	HFM1	84	66.667	ENSMEUG00000015788	HFM1	84	66.667	Notamacropus_eugenii
ENSBTAG00000020856	HFM1	84	75.698	ENSOPRG00000013916	HFM1	84	75.698	Ochotona_princeps
ENSBTAG00000020856	HFM1	71	61.992	ENSONIG00000010590	hfm1	99	61.950	Oreochromis_niloticus
ENSBTAG00000020856	HFM1	56	65.191	ENSORLG00000026844	hfm1	99	65.191	Oryzias_latipes
ENSBTAG00000020856	HFM1	68	55.622	ENSORLG00020002951	hfm1	78	55.723	Oryzias_latipes_hni
ENSBTAG00000020856	HFM1	78	55.810	ENSOMEG00000016474	hfm1	80	55.772	Oryzias_melastigma
ENSBTAG00000020856	HFM1	85	85.447	ENSOGAG00000032369	HFM1	100	85.447	Otolemur_garnettii
ENSBTAG00000020856	HFM1	100	96.106	ENSOARG00000015812	HFM1	100	96.106	Ovis_aries
ENSBTAG00000020856	HFM1	92	86.285	ENSPPAG00000024582	HFM1	99	86.285	Pan_paniscus
ENSBTAG00000020856	HFM1	100	87.500	ENSPPRG00000003270	HFM1	100	87.500	Panthera_pardus
ENSBTAG00000020856	HFM1	100	87.361	ENSPTIG00000018881	HFM1	100	87.361	Panthera_tigris_altaica
ENSBTAG00000020856	HFM1	100	85.417	ENSPTRG00000000948	HFM1	100	85.417	Pan_troglodytes
ENSBTAG00000020856	HFM1	100	84.444	ENSPANG00000009838	HFM1	100	84.444	Papio_anubis
ENSBTAG00000020856	HFM1	63	66.484	ENSPKIG00000003810	hfm1	95	68.491	Paramormyrops_kingsleyae
ENSBTAG00000020856	HFM1	57	66.385	ENSPMGG00000011059	hfm1	100	66.385	Periophthalmus_magnuspinnatus
ENSBTAG00000020856	HFM1	100	77.500	ENSPEMG00000022852	Hfm1	100	77.500	Peromyscus_maniculatus_bairdii
ENSBTAG00000020856	HFM1	100	67.248	ENSPCIG00000014233	HFM1	100	67.248	Phascolarctos_cinereus
ENSBTAG00000020856	HFM1	70	62.452	ENSPFOG00000017194	hfm1	99	62.452	Poecilia_formosa
ENSBTAG00000020856	HFM1	71	63.566	ENSPLAG00000000571	hfm1	92	63.566	Poecilia_latipinna
ENSBTAG00000020856	HFM1	71	63.178	ENSPMEG00000019475	hfm1	92	63.178	Poecilia_mexicana
ENSBTAG00000020856	HFM1	70	63.153	ENSPREG00000007803	hfm1	92	66.667	Poecilia_reticulata
ENSBTAG00000020856	HFM1	100	84.792	ENSPPYG00000001163	HFM1	100	84.792	Pongo_abelii
ENSBTAG00000020856	HFM1	70	80.269	ENSPCAG00000004289	-	70	80.269	Procavia_capensis
ENSBTAG00000020856	HFM1	100	77.917	ENSPVAG00000009713	HFM1	100	77.917	Pteropus_vampyrus
ENSBTAG00000020856	HFM1	70	60.550	ENSPNYG00000001795	hfm1	96	65.348	Pundamilia_nyererei
ENSBTAG00000020856	HFM1	59	68.085	ENSPNAG00000010865	hfm1	84	68.085	Pygocentrus_nattereri
ENSBTAG00000020856	HFM1	100	74.444	ENSRNOG00000023299	Hfm1	100	74.444	Rattus_norvegicus
ENSBTAG00000020856	HFM1	100	84.583	ENSRROG00000045569	HFM1	100	84.583	Rhinopithecus_roxellana
ENSBTAG00000020856	HFM1	100	82.292	ENSSBOG00000027456	HFM1	100	82.292	Saimiri_boliviensis_boliviensis
ENSBTAG00000020856	HFM1	60	71.626	ENSSHAG00000014616	-	98	71.626	Sarcophilus_harrisii
ENSBTAG00000020856	HFM1	86	57.245	ENSSFOG00015020129	hfm1	100	50.844	Scleropages_formosus
ENSBTAG00000020856	HFM1	62	65.140	ENSSMAG00000006907	hfm1	87	65.140	Scophthalmus_maximus
ENSBTAG00000020856	HFM1	61	63.401	ENSSDUG00000011424	hfm1	99	63.401	Seriola_dumerili
ENSBTAG00000020856	HFM1	63	66.627	ENSSLDG00000016386	hfm1	100	66.627	Seriola_lalandi_dorsalis
ENSBTAG00000020856	HFM1	68	58.770	ENSSPAG00000001023	hfm1	96	65.233	Stegastes_partitus
ENSBTAG00000020856	HFM1	100	83.817	ENSSSCG00000006912	HFM1	100	83.817	Sus_scrofa
ENSBTAG00000020856	HFM1	66	75.235	ENSTGUG00000006172	HFM1	100	75.235	Taeniopygia_guttata
ENSBTAG00000020856	HFM1	100	84.006	ENSTTRG00000013933	HFM1	100	84.006	Tursiops_truncatus
ENSBTAG00000020856	HFM1	93	86.588	ENSVPAG00000011331	HFM1	93	86.588	Vicugna_pacos
ENSBTAG00000020856	HFM1	70	83.915	ENSVVUG00000020760	HFM1	99	83.915	Vulpes_vulpes
ENSBTAG00000020856	HFM1	57	67.397	ENSXMAG00000004178	hfm1	91	67.397	Xiphophorus_maculatus