EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000020900 (Gene tree)
Gene ID: 516934
Gene Symbol: RPUSD4
Alias: -
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 11444 bases
Position: chr29:29550484-29561927
Accession: 34157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000027843	PseudoU_synth_2	PF00849.22	4.4e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000027843	-	3668	-	ENSBTAP00000027843	377 (aa)	-	A0A140T8A7

Gene Model

Click here to download ENSBTAG00000020900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000020900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000020900	RPUSD4	71	32.192	ENSBTAG00000007968	RPUSD3	80	31.359

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000020900	RPUSD4	100	77.778	ENSG00000165526	RPUSD4	100	78.307	Homo_sapiens
ENSBTAG00000020900	RPUSD4	85	52.599	ENSAPOG00000011024	rpusd4	82	52.599	Acanthochromis_polyacanthus
ENSBTAG00000020900	RPUSD4	99	80.965	ENSAMEG00000000127	-	99	80.965	Ailuropoda_melanoleuca
ENSBTAG00000020900	RPUSD4	62	81.452	ENSAMEG00000005953	-	100	81.452	Ailuropoda_melanoleuca
ENSBTAG00000020900	RPUSD4	90	47.688	ENSACIG00000003533	rpusd4	99	47.688	Amphilophus_citrinellus
ENSBTAG00000020900	RPUSD4	87	51.796	ENSAOCG00000015409	rpusd4	83	51.642	Amphiprion_ocellaris
ENSBTAG00000020900	RPUSD4	87	51.796	ENSAPEG00000018935	rpusd4	83	51.642	Amphiprion_percula
ENSBTAG00000020900	RPUSD4	94	47.872	ENSATEG00000008059	rpusd4	93	47.872	Anabas_testudineus
ENSBTAG00000020900	RPUSD4	73	60.932	ENSAPLG00000013250	RPUSD4	99	60.000	Anas_platyrhynchos
ENSBTAG00000020900	RPUSD4	96	59.836	ENSACAG00000000189	RPUSD4	99	59.836	Anolis_carolinensis
ENSBTAG00000020900	RPUSD4	98	79.301	ENSANAG00000024050	RPUSD4	99	79.301	Aotus_nancymaae
ENSBTAG00000020900	RPUSD4	85	51.543	ENSACLG00000020996	rpusd4	83	51.543	Astatotilapia_calliptera
ENSBTAG00000020900	RPUSD4	85	52.439	ENSAMXG00000031479	rpusd4	92	52.439	Astyanax_mexicanus
ENSBTAG00000020900	RPUSD4	98	79.784	ENSCJAG00000042850	RPUSD4	93	79.784	Callithrix_jacchus
ENSBTAG00000020900	RPUSD4	100	78.628	ENSCAFG00000010488	RPUSD4	100	78.628	Canis_familiaris
ENSBTAG00000020900	RPUSD4	100	78.628	ENSCAFG00020010621	RPUSD4	100	78.628	Canis_lupus_dingo
ENSBTAG00000020900	RPUSD4	100	95.767	ENSCHIG00000009975	RPUSD4	100	95.767	Capra_hircus
ENSBTAG00000020900	RPUSD4	100	80.106	ENSTSYG00000008456	RPUSD4	100	80.106	Carlito_syrichta
ENSBTAG00000020900	RPUSD4	67	75.794	ENSCAPG00000006040	RPUSD4	98	75.794	Cavia_aperea
ENSBTAG00000020900	RPUSD4	98	77.358	ENSCPOG00000014971	RPUSD4	98	77.358	Cavia_porcellus
ENSBTAG00000020900	RPUSD4	98	79.570	ENSCCAG00000027838	RPUSD4	99	79.570	Cebus_capucinus
ENSBTAG00000020900	RPUSD4	100	77.778	ENSCATG00000041570	RPUSD4	100	78.042	Cercocebus_atys
ENSBTAG00000020900	RPUSD4	98	79.839	ENSCLAG00000016553	RPUSD4	98	79.839	Chinchilla_lanigera
ENSBTAG00000020900	RPUSD4	100	78.042	ENSCSAG00000002274	RPUSD4	100	78.042	Chlorocebus_sabaeus
ENSBTAG00000020900	RPUSD4	75	79.152	ENSCHOG00000010249	RPUSD4	100	79.152	Choloepus_hoffmanni
ENSBTAG00000020900	RPUSD4	75	66.434	ENSCPBG00000011175	RPUSD4	99	66.434	Chrysemys_picta_bellii
ENSBTAG00000020900	RPUSD4	71	42.806	ENSCSAVG00000000872	-	54	42.806	Ciona_savignyi
ENSBTAG00000020900	RPUSD4	100	76.720	ENSCANG00000039684	RPUSD4	100	76.720	Colobus_angolensis_palliatus
ENSBTAG00000020900	RPUSD4	100	76.455	ENSCGRG00001024141	Rpusd4	100	76.455	Cricetulus_griseus_chok1gshd
ENSBTAG00000020900	RPUSD4	100	76.455	ENSCGRG00000014415	Rpusd4	100	76.455	Cricetulus_griseus_crigri
ENSBTAG00000020900	RPUSD4	86	50.602	ENSCVAG00000008761	rpusd4	84	50.602	Cyprinodon_variegatus
ENSBTAG00000020900	RPUSD4	88	49.565	ENSCVAG00000000392	rpusd4	97	49.565	Cyprinodon_variegatus
ENSBTAG00000020900	RPUSD4	85	49.231	ENSDARG00000012674	rpusd4	91	49.538	Danio_rerio
ENSBTAG00000020900	RPUSD4	100	75.926	ENSDNOG00000020026	RPUSD4	100	75.926	Dasypus_novemcinctus
ENSBTAG00000020900	RPUSD4	100	77.778	ENSDORG00000016717	Rpusd4	100	78.042	Dipodomys_ordii
ENSBTAG00000020900	RPUSD4	98	76.359	ENSETEG00000013953	RPUSD4	98	76.359	Echinops_telfairi
ENSBTAG00000020900	RPUSD4	100	82.275	ENSEASG00005022982	RPUSD4	100	82.275	Equus_asinus_asinus
ENSBTAG00000020900	RPUSD4	100	82.011	ENSECAG00000000557	RPUSD4	100	82.011	Equus_caballus
ENSBTAG00000020900	RPUSD4	82	77.368	ENSEEUG00000014036	RPUSD4	82	77.368	Erinaceus_europaeus
ENSBTAG00000020900	RPUSD4	85	54.328	ENSELUG00000008075	rpusd4	87	54.328	Esox_lucius
ENSBTAG00000020900	RPUSD4	100	79.365	ENSFCAG00000029789	RPUSD4	100	79.365	Felis_catus
ENSBTAG00000020900	RPUSD4	87	58.912	ENSFALG00000005171	RPUSD4	97	58.912	Ficedula_albicollis
ENSBTAG00000020900	RPUSD4	100	77.249	ENSFDAG00000014307	RPUSD4	100	77.249	Fukomys_damarensis
ENSBTAG00000020900	RPUSD4	86	51.807	ENSFHEG00000004329	rpusd4	85	51.807	Fundulus_heteroclitus
ENSBTAG00000020900	RPUSD4	85	50.154	ENSGMOG00000017726	rpusd4	99	49.405	Gadus_morhua
ENSBTAG00000020900	RPUSD4	89	56.686	ENSGALG00000024326	RPUSD4	97	58.046	Gallus_gallus
ENSBTAG00000020900	RPUSD4	89	47.536	ENSGAFG00000021559	rpusd4	88	47.536	Gambusia_affinis
ENSBTAG00000020900	RPUSD4	89	48.673	ENSGACG00000001657	rpusd4	99	50.345	Gasterosteus_aculeatus
ENSBTAG00000020900	RPUSD4	94	60.845	ENSGAGG00000000132	RPUSD4	97	61.017	Gopherus_agassizii
ENSBTAG00000020900	RPUSD4	100	77.778	ENSGGOG00000016494	RPUSD4	100	78.042	Gorilla_gorilla
ENSBTAG00000020900	RPUSD4	85	51.543	ENSHBUG00000022838	rpusd4	83	51.543	Haplochromis_burtoni
ENSBTAG00000020900	RPUSD4	100	76.984	ENSHGLG00000002285	RPUSD4	100	76.984	Heterocephalus_glaber_female
ENSBTAG00000020900	RPUSD4	100	76.984	ENSHGLG00100006385	RPUSD4	100	76.984	Heterocephalus_glaber_male
ENSBTAG00000020900	RPUSD4	86	51.506	ENSHCOG00000006612	rpusd4	84	51.506	Hippocampus_comes
ENSBTAG00000020900	RPUSD4	93	50.708	ENSIPUG00000023879	rusd4	91	50.708	Ictalurus_punctatus
ENSBTAG00000020900	RPUSD4	97	79.121	ENSSTOG00000025280	RPUSD4	100	79.121	Ictidomys_tridecemlineatus
ENSBTAG00000020900	RPUSD4	98	78.610	ENSJJAG00000018673	Rpusd4	99	78.610	Jaculus_jaculus
ENSBTAG00000020900	RPUSD4	94	50.685	ENSKMAG00000021805	rpusd4	95	50.685	Kryptolebias_marmoratus
ENSBTAG00000020900	RPUSD4	82	53.106	ENSLBEG00000020394	rpusd4	90	53.106	Labrus_bergylta
ENSBTAG00000020900	RPUSD4	86	60.550	ENSLACG00000011028	RPUSD4	83	60.550	Latimeria_chalumnae
ENSBTAG00000020900	RPUSD4	85	49.074	ENSLOCG00000003124	rpusd4	86	48.765	Lepisosteus_oculatus
ENSBTAG00000020900	RPUSD4	100	77.454	ENSLAFG00000005211	RPUSD4	100	77.454	Loxodonta_africana
ENSBTAG00000020900	RPUSD4	100	77.778	ENSMFAG00000039513	RPUSD4	100	78.042	Macaca_fascicularis
ENSBTAG00000020900	RPUSD4	100	77.513	ENSMMUG00000007933	RPUSD4	100	77.778	Macaca_mulatta
ENSBTAG00000020900	RPUSD4	100	77.778	ENSMNEG00000027414	RPUSD4	100	78.042	Macaca_nemestrina
ENSBTAG00000020900	RPUSD4	100	77.778	ENSMLEG00000042461	RPUSD4	100	77.778	Mandrillus_leucophaeus
ENSBTAG00000020900	RPUSD4	84	50.152	ENSMAMG00000023839	rpusd4	85	50.152	Mastacembelus_armatus
ENSBTAG00000020900	RPUSD4	85	51.543	ENSMZEG00005011999	rpusd4	83	51.543	Maylandia_zebra
ENSBTAG00000020900	RPUSD4	73	63.177	ENSMGAG00000000840	RPUSD4	99	59.813	Meleagris_gallopavo
ENSBTAG00000020900	RPUSD4	100	75.397	ENSMAUG00000010280	Rpusd4	100	75.397	Mesocricetus_auratus
ENSBTAG00000020900	RPUSD4	100	79.894	ENSMICG00000015979	RPUSD4	100	79.894	Microcebus_murinus
ENSBTAG00000020900	RPUSD4	98	73.656	ENSMOCG00000000661	Rpusd4	98	73.656	Microtus_ochrogaster
ENSBTAG00000020900	RPUSD4	78	55.184	ENSMMOG00000021731	rpusd4	88	55.184	Mola_mola
ENSBTAG00000020900	RPUSD4	92	70.115	ENSMODG00000004521	RPUSD4	89	70.115	Monodelphis_domestica
ENSBTAG00000020900	RPUSD4	79	51.974	ENSMALG00000005839	rpusd4	97	50.311	Monopterus_albus
ENSBTAG00000020900	RPUSD4	100	73.810	MGP_CAROLIEiJ_G0031954	Rpusd4	100	73.810	Mus_caroli
ENSBTAG00000020900	RPUSD4	98	74.462	ENSMUSG00000032044	Rpusd4	98	74.462	Mus_musculus
ENSBTAG00000020900	RPUSD4	100	75.132	MGP_PahariEiJ_G0014819	Rpusd4	100	75.132	Mus_pahari
ENSBTAG00000020900	RPUSD4	98	74.462	MGP_SPRETEiJ_G0033078	Rpusd4	98	74.462	Mus_spretus
ENSBTAG00000020900	RPUSD4	99	78.989	ENSMPUG00000006608	RPUSD4	99	78.989	Mustela_putorius_furo
ENSBTAG00000020900	RPUSD4	90	82.647	ENSMLUG00000017328	-	96	80.274	Myotis_lucifugus
ENSBTAG00000020900	RPUSD4	67	81.102	ENSMLUG00000029348	-	100	81.102	Myotis_lucifugus
ENSBTAG00000020900	RPUSD4	99	76.471	ENSNGAG00000020847	Rpusd4	99	76.471	Nannospalax_galili
ENSBTAG00000020900	RPUSD4	85	52.615	ENSNBRG00000005207	rpusd4	94	52.615	Neolamprologus_brichardi
ENSBTAG00000020900	RPUSD4	100	77.513	ENSNLEG00000007465	RPUSD4	100	77.513	Nomascus_leucogenys
ENSBTAG00000020900	RPUSD4	93	66.952	ENSMEUG00000004370	RPUSD4	94	66.952	Notamacropus_eugenii
ENSBTAG00000020900	RPUSD4	70	60.755	ENSOPRG00000013141	-	100	60.755	Ochotona_princeps
ENSBTAG00000020900	RPUSD4	98	78.226	ENSODEG00000004577	RPUSD4	98	78.226	Octodon_degus
ENSBTAG00000020900	RPUSD4	88	51.327	ENSONIG00000018879	rpusd4	91	51.327	Oreochromis_niloticus
ENSBTAG00000020900	RPUSD4	77	66.780	ENSOANG00000007247	RPUSD4	95	66.667	Ornithorhynchus_anatinus
ENSBTAG00000020900	RPUSD4	100	76.984	ENSOCUG00000017039	RPUSD4	100	76.984	Oryctolagus_cuniculus
ENSBTAG00000020900	RPUSD4	90	48.406	ENSORLG00000002750	rpusd4	93	48.688	Oryzias_latipes
ENSBTAG00000020900	RPUSD4	91	47.472	ENSORLG00020002044	rpusd4	86	48.127	Oryzias_latipes_hni
ENSBTAG00000020900	RPUSD4	91	48.034	ENSORLG00015020034	rpusd4	85	49.415	Oryzias_latipes_hsok
ENSBTAG00000020900	RPUSD4	84	52.778	ENSOMEG00000004861	rpusd4	79	52.778	Oryzias_melastigma
ENSBTAG00000020900	RPUSD4	100	78.628	ENSOGAG00000008922	RPUSD4	100	78.892	Otolemur_garnettii
ENSBTAG00000020900	RPUSD4	98	96.486	ENSOARG00000012238	RPUSD4	98	96.486	Ovis_aries
ENSBTAG00000020900	RPUSD4	100	78.042	ENSPPAG00000042883	RPUSD4	93	78.307	Pan_paniscus
ENSBTAG00000020900	RPUSD4	100	79.894	ENSPPRG00000003081	RPUSD4	100	79.894	Panthera_pardus
ENSBTAG00000020900	RPUSD4	100	79.894	ENSPTIG00000012059	RPUSD4	100	79.894	Panthera_tigris_altaica
ENSBTAG00000020900	RPUSD4	100	77.778	ENSPTRG00000004454	RPUSD4	100	78.042	Pan_troglodytes
ENSBTAG00000020900	RPUSD4	100	78.307	ENSPANG00000015040	RPUSD4	100	78.571	Papio_anubis
ENSBTAG00000020900	RPUSD4	88	57.186	ENSPKIG00000023986	rpusd4	85	57.186	Paramormyrops_kingsleyae
ENSBTAG00000020900	RPUSD4	79	66.000	ENSPSIG00000014268	RPUSD4	95	66.000	Pelodiscus_sinensis
ENSBTAG00000020900	RPUSD4	86	49.245	ENSPMGG00000002806	rpusd4	91	49.091	Periophthalmus_magnuspinnatus
ENSBTAG00000020900	RPUSD4	100	68.783	ENSPEMG00000000278	Rpusd4	100	68.783	Peromyscus_maniculatus_bairdii
ENSBTAG00000020900	RPUSD4	79	45.921	ENSPMAG00000008183	rpusd4	96	45.317	Petromyzon_marinus
ENSBTAG00000020900	RPUSD4	97	68.493	ENSPCIG00000010212	RPUSD4	100	68.493	Phascolarctos_cinereus
ENSBTAG00000020900	RPUSD4	87	49.123	ENSPFOG00000019030	rpusd4	89	49.123	Poecilia_formosa
ENSBTAG00000020900	RPUSD4	87	49.706	ENSPLAG00000016848	rpusd4	86	49.706	Poecilia_latipinna
ENSBTAG00000020900	RPUSD4	83	50.000	ENSPMEG00000017534	rpusd4	81	50.000	Poecilia_mexicana
ENSBTAG00000020900	RPUSD4	79	51.456	ENSPREG00000005689	rpusd4	77	52.333	Poecilia_reticulata
ENSBTAG00000020900	RPUSD4	100	79.101	ENSPPYG00000004043	RPUSD4	100	79.101	Pongo_abelii
ENSBTAG00000020900	RPUSD4	80	75.424	ENSPCAG00000000753	RPUSD4	81	75.424	Procavia_capensis
ENSBTAG00000020900	RPUSD4	98	75.000	ENSPCOG00000020694	RPUSD4	100	75.000	Propithecus_coquereli
ENSBTAG00000020900	RPUSD4	100	78.571	ENSPVAG00000000988	RPUSD4	100	78.571	Pteropus_vampyrus
ENSBTAG00000020900	RPUSD4	85	51.692	ENSPNYG00000009652	rpusd4	83	51.692	Pundamilia_nyererei
ENSBTAG00000020900	RPUSD4	88	51.940	ENSPNAG00000012264	rpusd4	88	51.940	Pygocentrus_nattereri
ENSBTAG00000020900	RPUSD4	98	76.075	ENSRNOG00000011567	Rpusd4	98	76.075	Rattus_norvegicus
ENSBTAG00000020900	RPUSD4	100	77.513	ENSRBIG00000034842	RPUSD4	100	77.513	Rhinopithecus_bieti
ENSBTAG00000020900	RPUSD4	100	77.513	ENSRROG00000039753	RPUSD4	100	77.513	Rhinopithecus_roxellana
ENSBTAG00000020900	RPUSD4	98	77.957	ENSSBOG00000030413	RPUSD4	99	77.957	Saimiri_boliviensis_boliviensis
ENSBTAG00000020900	RPUSD4	80	71.096	ENSSHAG00000008304	RPUSD4	99	71.096	Sarcophilus_harrisii
ENSBTAG00000020900	RPUSD4	86	57.100	ENSSFOG00015006203	rpusd4	89	57.910	Scleropages_formosus
ENSBTAG00000020900	RPUSD4	88	51.343	ENSSMAG00000020978	rpusd4	87	51.368	Scophthalmus_maximus
ENSBTAG00000020900	RPUSD4	93	46.505	ENSSDUG00000013399	rpusd4	96	46.505	Seriola_dumerili
ENSBTAG00000020900	RPUSD4	93	47.439	ENSSLDG00000023507	rpusd4	96	47.439	Seriola_lalandi_dorsalis
ENSBTAG00000020900	RPUSD4	88	64.392	ENSSPUG00000001401	RPUSD4	92	64.688	Sphenodon_punctatus
ENSBTAG00000020900	RPUSD4	86	53.313	ENSSPAG00000012163	rpusd4	84	53.313	Stegastes_partitus
ENSBTAG00000020900	RPUSD4	100	84.615	ENSSSCG00000015233	RPUSD4	100	84.615	Sus_scrofa
ENSBTAG00000020900	RPUSD4	79	59.866	ENSTGUG00000000773	RPUSD4	99	59.866	Taeniopygia_guttata
ENSBTAG00000020900	RPUSD4	86	50.610	ENSTRUG00000012283	rpusd4	84	50.610	Takifugu_rubripes
ENSBTAG00000020900	RPUSD4	84	52.160	ENSTNIG00000014676	rpusd4	83	52.160	Tetraodon_nigroviridis
ENSBTAG00000020900	RPUSD4	100	84.881	ENSTTRG00000001555	RPUSD4	100	84.881	Tursiops_truncatus
ENSBTAG00000020900	RPUSD4	100	80.159	ENSUMAG00000002219	RPUSD4	100	80.159	Ursus_maritimus
ENSBTAG00000020900	RPUSD4	70	85.283	ENSVPAG00000001066	RPUSD4	100	85.283	Vicugna_pacos
ENSBTAG00000020900	RPUSD4	100	78.628	ENSVVUG00000020101	RPUSD4	100	78.628	Vulpes_vulpes
ENSBTAG00000020900	RPUSD4	93	47.778	ENSXCOG00000004676	rpusd4	83	50.000	Xiphophorus_couchianus
ENSBTAG00000020900	RPUSD4	93	48.199	ENSXMAG00000023351	rpusd4	92	48.199	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005759	mitochondrial matrix	-	IEA	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0070131	positive regulation of mitochondrial translation	-	ISS	Process