EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000020922 (Gene tree)
Gene ID: 532933
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 31848 bases
Position: chr7:4336942-4368789
Accession: 36680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000027868	UPF1_Zn_bind	PF09416.10	8.9e-75	1	1
ENSBTAP00000027868	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000027868	-	3790	-	ENSBTAP00000027868	1127 (aa)	XP_005208537	E1BEK9

Gene Model

Click here to download ENSBTAG00000020922's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000020922's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000020922	UPF1	100	99.204	ENSG00000005007	UPF1	100	99.204	Homo_sapiens
ENSBTAG00000020922	UPF1	100	92.028	ENSAPOG00000010916	-	100	92.028	Acanthochromis_polyacanthus
ENSBTAG00000020922	UPF1	100	90.724	ENSAPOG00000023773	upf1	100	90.814	Acanthochromis_polyacanthus
ENSBTAG00000020922	UPF1	100	98.496	ENSAMEG00000011474	UPF1	100	98.496	Ailuropoda_melanoleuca
ENSBTAG00000020922	UPF1	100	90.556	ENSACIG00000019949	upf1	100	90.901	Amphilophus_citrinellus
ENSBTAG00000020922	UPF1	92	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSBTAG00000020922	UPF1	100	92.028	ENSAOCG00000006352	-	100	92.028	Amphiprion_ocellaris
ENSBTAG00000020922	UPF1	100	90.240	ENSAOCG00000018519	upf1	100	90.814	Amphiprion_ocellaris
ENSBTAG00000020922	UPF1	100	92.028	ENSAPEG00000006292	-	100	92.028	Amphiprion_percula
ENSBTAG00000020922	UPF1	100	90.240	ENSAPEG00000016344	upf1	100	90.814	Amphiprion_percula
ENSBTAG00000020922	UPF1	100	92.117	ENSATEG00000016606	-	100	92.117	Anabas_testudineus
ENSBTAG00000020922	UPF1	100	89.432	ENSATEG00000017867	upf1	100	90.218	Anabas_testudineus
ENSBTAG00000020922	UPF1	94	98.292	ENSAPLG00000009175	UPF1	100	98.292	Anas_platyrhynchos
ENSBTAG00000020922	UPF1	95	96.933	ENSANAG00000024107	UPF1	97	96.933	Aotus_nancymaae
ENSBTAG00000020922	UPF1	100	90.291	ENSACLG00000007181	upf1	100	90.636	Astatotilapia_calliptera
ENSBTAG00000020922	UPF1	100	91.933	ENSACLG00000022630	-	100	91.844	Astatotilapia_calliptera
ENSBTAG00000020922	UPF1	100	92.648	ENSAMXG00000042187	upf1	100	93.091	Astyanax_mexicanus
ENSBTAG00000020922	UPF1	89	50.441	WBGene00004880	smg-2	99	47.776	Caenorhabditis_elegans
ENSBTAG00000020922	UPF1	100	99.204	ENSCJAG00000019627	UPF1	100	99.204	Callithrix_jacchus
ENSBTAG00000020922	UPF1	100	99.558	ENSCAFG00000014578	UPF1	100	99.558	Canis_familiaris
ENSBTAG00000020922	UPF1	100	98.584	ENSCAFG00020012347	UPF1	100	98.584	Canis_lupus_dingo
ENSBTAG00000020922	UPF1	100	99.556	ENSCHIG00000011018	UPF1	100	99.556	Capra_hircus
ENSBTAG00000020922	UPF1	96	97.778	ENSTSYG00000008877	UPF1	99	97.778	Carlito_syrichta
ENSBTAG00000020922	UPF1	93	98.573	ENSCAPG00000005758	UPF1	95	98.573	Cavia_aperea
ENSBTAG00000020922	UPF1	100	96.549	ENSCPOG00000025463	UPF1	100	96.549	Cavia_porcellus
ENSBTAG00000020922	UPF1	100	99.113	ENSCCAG00000032175	UPF1	100	99.113	Cebus_capucinus
ENSBTAG00000020922	UPF1	93	99.620	ENSCATG00000040306	UPF1	98	99.620	Cercocebus_atys
ENSBTAG00000020922	UPF1	96	98.057	ENSCLAG00000004037	UPF1	99	99.619	Chinchilla_lanigera
ENSBTAG00000020922	UPF1	100	98.142	ENSCSAG00000005276	UPF1	100	98.142	Chlorocebus_sabaeus
ENSBTAG00000020922	UPF1	100	96.460	ENSCPBG00000012513	UPF1	100	96.460	Chrysemys_picta_bellii
ENSBTAG00000020922	UPF1	78	77.438	ENSCING00000021399	-	99	77.438	Ciona_intestinalis
ENSBTAG00000020922	UPF1	99	71.404	ENSCSAVG00000006533	-	99	71.404	Ciona_savignyi
ENSBTAG00000020922	UPF1	95	98.784	ENSCANG00000029819	UPF1	99	98.784	Colobus_angolensis_palliatus
ENSBTAG00000020922	UPF1	100	97.693	ENSCGRG00001021067	Upf1	100	97.693	Cricetulus_griseus_chok1gshd
ENSBTAG00000020922	UPF1	95	98.221	ENSCGRG00000013480	Upf1	99	98.221	Cricetulus_griseus_crigri
ENSBTAG00000020922	UPF1	100	85.562	ENSCSEG00000017239	upf1	100	85.651	Cynoglossus_semilaevis
ENSBTAG00000020922	UPF1	100	92.021	ENSCSEG00000016159	-	100	91.933	Cynoglossus_semilaevis
ENSBTAG00000020922	UPF1	100	91.763	ENSCVAG00000010561	upf1	100	91.674	Cyprinodon_variegatus
ENSBTAG00000020922	UPF1	100	92.471	ENSDARG00000016302	upf1	100	92.914	Danio_rerio
ENSBTAG00000020922	UPF1	96	95.088	ENSDORG00000009984	Upf1	95	96.768	Dipodomys_ordii
ENSBTAG00000020922	UPF1	85	70.287	FBgn0030354	Upf1	84	66.857	Drosophila_melanogaster
ENSBTAG00000020922	UPF1	56	83.866	ENSEBUG00000010069	upf1	96	84.185	Eptatretus_burgeri
ENSBTAG00000020922	UPF1	100	98.669	ENSEASG00005006549	UPF1	100	98.669	Equus_asinus_asinus
ENSBTAG00000020922	UPF1	100	98.669	ENSECAG00000010639	UPF1	100	98.669	Equus_caballus
ENSBTAG00000020922	UPF1	100	90.035	ENSELUG00000020917	upf1	100	90.212	Esox_lucius
ENSBTAG00000020922	UPF1	100	91.278	ENSELUG00000012916	-	100	91.197	Esox_lucius
ENSBTAG00000020922	UPF1	100	99.469	ENSFCAG00000009757	UPF1	100	99.469	Felis_catus
ENSBTAG00000020922	UPF1	96	96.125	ENSFALG00000009312	UPF1	99	96.125	Ficedula_albicollis
ENSBTAG00000020922	UPF1	96	97.957	ENSFDAG00000014816	UPF1	99	99.524	Fukomys_damarensis
ENSBTAG00000020922	UPF1	85	93.829	ENSFHEG00000016276	-	96	94.011	Fundulus_heteroclitus
ENSBTAG00000020922	UPF1	100	87.786	ENSFHEG00000006428	upf1	100	87.786	Fundulus_heteroclitus
ENSBTAG00000020922	UPF1	100	91.585	ENSGMOG00000007541	upf1	100	92.028	Gadus_morhua
ENSBTAG00000020922	UPF1	100	96.814	ENSGALG00000003220	UPF1	100	96.814	Gallus_gallus
ENSBTAG00000020922	UPF1	62	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSBTAG00000020922	UPF1	100	91.578	ENSGAFG00000004831	upf1	100	91.489	Gambusia_affinis
ENSBTAG00000020922	UPF1	100	96.631	ENSGAGG00000022217	UPF1	100	96.631	Gopherus_agassizii
ENSBTAG00000020922	UPF1	93	98.763	ENSGGOG00000002608	UPF1	99	98.763	Gorilla_gorilla
ENSBTAG00000020922	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSBTAG00000020922	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSBTAG00000020922	UPF1	100	98.673	ENSHGLG00000010900	UPF1	100	98.673	Heterocephalus_glaber_female
ENSBTAG00000020922	UPF1	96	95.492	ENSHGLG00100005904	UPF1	99	95.492	Heterocephalus_glaber_male
ENSBTAG00000020922	UPF1	100	91.046	ENSHCOG00000008918	upf1	100	93.014	Hippocampus_comes
ENSBTAG00000020922	UPF1	100	93.091	ENSIPUG00000005108	UPF1	100	93.446	Ictalurus_punctatus
ENSBTAG00000020922	UPF1	100	99.113	ENSSTOG00000009196	UPF1	100	99.113	Ictidomys_tridecemlineatus
ENSBTAG00000020922	UPF1	100	98.225	ENSJJAG00000023151	Upf1	100	98.225	Jaculus_jaculus
ENSBTAG00000020922	UPF1	100	92.028	ENSKMAG00000004962	upf1	100	91.940	Kryptolebias_marmoratus
ENSBTAG00000020922	UPF1	100	91.940	ENSLBEG00000027848	-	100	91.940	Labrus_bergylta
ENSBTAG00000020922	UPF1	100	88.801	ENSLBEG00000014862	upf1	100	89.939	Labrus_bergylta
ENSBTAG00000020922	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSBTAG00000020922	UPF1	100	94.415	ENSLOCG00000002072	upf1	100	94.415	Lepisosteus_oculatus
ENSBTAG00000020922	UPF1	100	98.582	ENSLAFG00000014963	UPF1	100	98.582	Loxodonta_africana
ENSBTAG00000020922	UPF1	100	99.204	ENSMFAG00000037748	UPF1	100	99.204	Macaca_fascicularis
ENSBTAG00000020922	UPF1	100	99.204	ENSMMUG00000023286	UPF1	100	99.204	Macaca_mulatta
ENSBTAG00000020922	UPF1	100	99.204	ENSMNEG00000000046	UPF1	100	99.204	Macaca_nemestrina
ENSBTAG00000020922	UPF1	93	99.810	ENSMLEG00000028404	UPF1	99	99.810	Mandrillus_leucophaeus
ENSBTAG00000020922	UPF1	100	91.320	ENSMAMG00000006231	-	100	91.763	Mastacembelus_armatus
ENSBTAG00000020922	UPF1	100	89.170	ENSMAMG00000006229	upf1	100	90.131	Mastacembelus_armatus
ENSBTAG00000020922	UPF1	100	91.933	ENSMZEG00005016386	-	100	91.844	Maylandia_zebra
ENSBTAG00000020922	UPF1	100	89.267	ENSMZEG00005003489	upf1	100	90.439	Maylandia_zebra
ENSBTAG00000020922	UPF1	93	97.909	ENSMGAG00000004745	UPF1	100	97.909	Meleagris_gallopavo
ENSBTAG00000020922	UPF1	95	97.495	ENSMAUG00000011398	Upf1	97	97.495	Mesocricetus_auratus
ENSBTAG00000020922	UPF1	100	98.053	ENSMICG00000001659	UPF1	100	98.053	Microcebus_murinus
ENSBTAG00000020922	UPF1	100	98.580	ENSMOCG00000005699	Upf1	100	98.580	Microtus_ochrogaster
ENSBTAG00000020922	UPF1	100	89.973	ENSMMOG00000007881	upf1	100	90.426	Mola_mola
ENSBTAG00000020922	UPF1	94	91.572	ENSMMOG00000007537	-	99	91.667	Mola_mola
ENSBTAG00000020922	UPF1	100	98.147	ENSMODG00000003689	UPF1	100	98.147	Monodelphis_domestica
ENSBTAG00000020922	UPF1	100	90.829	ENSMALG00000018100	-	100	90.829	Monopterus_albus
ENSBTAG00000020922	UPF1	100	90.240	ENSMALG00000000144	upf1	100	90.506	Monopterus_albus
ENSBTAG00000020922	UPF1	100	98.580	MGP_CAROLIEiJ_G0031142	Upf1	100	98.580	Mus_caroli
ENSBTAG00000020922	UPF1	100	98.580	ENSMUSG00000058301	Upf1	100	98.580	Mus_musculus
ENSBTAG00000020922	UPF1	100	98.580	MGP_PahariEiJ_G0021607	Upf1	100	98.580	Mus_pahari
ENSBTAG00000020922	UPF1	100	98.580	MGP_SPRETEiJ_G0032260	Upf1	100	98.580	Mus_spretus
ENSBTAG00000020922	UPF1	100	98.584	ENSMPUG00000015516	UPF1	100	98.584	Mustela_putorius_furo
ENSBTAG00000020922	UPF1	99	98.224	ENSMLUG00000012122	UPF1	99	98.224	Myotis_lucifugus
ENSBTAG00000020922	UPF1	100	98.404	ENSNGAG00000024107	Upf1	100	98.404	Nannospalax_galili
ENSBTAG00000020922	UPF1	100	89.646	ENSNBRG00000022069	-	100	92.981	Neolamprologus_brichardi
ENSBTAG00000020922	UPF1	100	88.614	ENSNBRG00000000670	upf1	100	88.958	Neolamprologus_brichardi
ENSBTAG00000020922	UPF1	93	94.006	ENSNLEG00000006062	UPF1	99	94.006	Nomascus_leucogenys
ENSBTAG00000020922	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSBTAG00000020922	UPF1	93	90.771	ENSOPRG00000014018	UPF1	99	90.771	Ochotona_princeps
ENSBTAG00000020922	UPF1	100	97.693	ENSODEG00000012426	UPF1	100	97.693	Octodon_degus
ENSBTAG00000020922	UPF1	100	92.021	ENSONIG00000012729	-	100	91.933	Oreochromis_niloticus
ENSBTAG00000020922	UPF1	100	89.529	ENSONIG00000010452	upf1	100	90.702	Oreochromis_niloticus
ENSBTAG00000020922	UPF1	100	97.609	ENSOANG00000004568	UPF1	100	97.609	Ornithorhynchus_anatinus
ENSBTAG00000020922	UPF1	100	91.940	ENSORLG00000008453	upf1	100	91.940	Oryzias_latipes
ENSBTAG00000020922	UPF1	100	91.858	ENSORLG00020014758	upf1	100	91.858	Oryzias_latipes_hni
ENSBTAG00000020922	UPF1	100	91.858	ENSORLG00015010165	upf1	100	91.858	Oryzias_latipes_hsok
ENSBTAG00000020922	UPF1	100	92.028	ENSOMEG00000003665	upf1	100	91.940	Oryzias_melastigma
ENSBTAG00000020922	UPF1	100	98.319	ENSOGAG00000012866	UPF1	100	98.319	Otolemur_garnettii
ENSBTAG00000020922	UPF1	96	97.698	ENSOARG00000010739	UPF1	100	97.698	Ovis_aries
ENSBTAG00000020922	UPF1	96	97.608	ENSPPAG00000043884	UPF1	99	97.608	Pan_paniscus
ENSBTAG00000020922	UPF1	100	99.469	ENSPPRG00000023470	UPF1	100	99.469	Panthera_pardus
ENSBTAG00000020922	UPF1	93	96.771	ENSPTIG00000010159	UPF1	99	96.771	Panthera_tigris_altaica
ENSBTAG00000020922	UPF1	100	99.204	ENSPTRG00000010721	UPF1	100	99.204	Pan_troglodytes
ENSBTAG00000020922	UPF1	100	99.204	ENSPANG00000008847	UPF1	100	99.204	Papio_anubis
ENSBTAG00000020922	UPF1	94	91.925	ENSPKIG00000006069	upf1	99	91.831	Paramormyrops_kingsleyae
ENSBTAG00000020922	UPF1	68	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSBTAG00000020922	UPF1	100	88.604	ENSPMGG00000017327	upf1	100	88.713	Periophthalmus_magnuspinnatus
ENSBTAG00000020922	UPF1	100	98.669	ENSPEMG00000001085	Upf1	100	98.669	Peromyscus_maniculatus_bairdii
ENSBTAG00000020922	UPF1	100	86.837	ENSPMAG00000001206	upf1	100	86.572	Petromyzon_marinus
ENSBTAG00000020922	UPF1	100	97.609	ENSPCIG00000006156	UPF1	100	97.609	Phascolarctos_cinereus
ENSBTAG00000020922	UPF1	100	91.667	ENSPLAG00000016232	-	100	91.578	Poecilia_latipinna
ENSBTAG00000020922	UPF1	100	88.752	ENSPLAG00000018155	-	100	88.664	Poecilia_latipinna
ENSBTAG00000020922	UPF1	100	89.292	ENSPMEG00000011443	-	100	89.204	Poecilia_mexicana
ENSBTAG00000020922	UPF1	100	91.755	ENSPMEG00000016319	-	100	91.667	Poecilia_mexicana
ENSBTAG00000020922	UPF1	100	89.192	ENSPREG00000009940	upf1	100	89.192	Poecilia_reticulata
ENSBTAG00000020922	UPF1	100	91.489	ENSPREG00000011247	-	100	91.401	Poecilia_reticulata
ENSBTAG00000020922	UPF1	100	94.248	ENSPPYG00000009752	UPF1	100	94.248	Pongo_abelii
ENSBTAG00000020922	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSBTAG00000020922	UPF1	100	99.204	ENSPCOG00000023813	UPF1	100	99.204	Propithecus_coquereli
ENSBTAG00000020922	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSBTAG00000020922	UPF1	100	91.933	ENSPNYG00000016731	-	100	91.844	Pundamilia_nyererei
ENSBTAG00000020922	UPF1	100	89.267	ENSPNYG00000003694	upf1	100	90.439	Pundamilia_nyererei
ENSBTAG00000020922	UPF1	100	92.648	ENSPNAG00000025614	upf1	100	93.091	Pygocentrus_nattereri
ENSBTAG00000020922	UPF1	100	98.580	ENSRNOG00000020134	Upf1	100	98.580	Rattus_norvegicus
ENSBTAG00000020922	UPF1	95	96.445	ENSRBIG00000013894	UPF1	98	98.485	Rhinopithecus_bieti
ENSBTAG00000020922	UPF1	95	98.784	ENSRROG00000040935	UPF1	99	98.784	Rhinopithecus_roxellana
ENSBTAG00000020922	UPF1	72	57.108	YMR080C	NAM7	82	57.108	Saccharomyces_cerevisiae
ENSBTAG00000020922	UPF1	97	96.986	ENSSBOG00000023632	UPF1	99	96.986	Saimiri_boliviensis_boliviensis
ENSBTAG00000020922	UPF1	93	99.050	ENSSHAG00000010499	UPF1	100	99.050	Sarcophilus_harrisii
ENSBTAG00000020922	UPF1	100	94.504	ENSSFOG00015021095	upf1	99	96.300	Scleropages_formosus
ENSBTAG00000020922	UPF1	100	88.451	ENSSMAG00000005055	upf1	100	89.248	Scophthalmus_maximus
ENSBTAG00000020922	UPF1	100	92.028	ENSSMAG00000021018	-	100	92.028	Scophthalmus_maximus
ENSBTAG00000020922	UPF1	100	92.294	ENSSDUG00000009629	-	100	92.294	Seriola_dumerili
ENSBTAG00000020922	UPF1	100	89.432	ENSSDUG00000013320	upf1	100	90.393	Seriola_dumerili
ENSBTAG00000020922	UPF1	100	90.220	ENSSLDG00000020868	upf1	100	90.677	Seriola_lalandi_dorsalis
ENSBTAG00000020922	UPF1	100	92.294	ENSSLDG00000006878	-	100	92.294	Seriola_lalandi_dorsalis
ENSBTAG00000020922	UPF1	100	96.283	ENSSPUG00000010538	UPF1	100	96.283	Sphenodon_punctatus
ENSBTAG00000020922	UPF1	100	88.741	ENSSPAG00000000003	upf1	100	88.683	Stegastes_partitus
ENSBTAG00000020922	UPF1	100	92.110	ENSSPAG00000011521	-	100	92.021	Stegastes_partitus
ENSBTAG00000020922	UPF1	100	99.911	ENSSSCG00000039301	UPF1	100	99.911	Sus_scrofa
ENSBTAG00000020922	UPF1	83	90.213	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSBTAG00000020922	UPF1	100	90.957	ENSTRUG00000005131	-	100	90.957	Takifugu_rubripes
ENSBTAG00000020922	UPF1	100	89.885	ENSTRUG00000000150	upf1	100	89.885	Takifugu_rubripes
ENSBTAG00000020922	UPF1	100	95.120	ENSTTRG00000011544	UPF1	100	95.120	Tursiops_truncatus
ENSBTAG00000020922	UPF1	100	98.496	ENSUAMG00000007093	UPF1	100	98.496	Ursus_americanus
ENSBTAG00000020922	UPF1	95	98.972	ENSUMAG00000006652	UPF1	99	98.972	Ursus_maritimus
ENSBTAG00000020922	UPF1	100	98.584	ENSVVUG00000007797	UPF1	100	98.584	Vulpes_vulpes
ENSBTAG00000020922	UPF1	100	82.731	ENSXETG00000013602	upf1	100	81.163	Xenopus_tropicalis
ENSBTAG00000020922	UPF1	92	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSBTAG00000020922	UPF1	97	89.093	ENSXCOG00000015275	-	96	89.001	Xiphophorus_couchianus
ENSBTAG00000020922	UPF1	100	89.362	ENSXMAG00000001703	-	100	89.273	Xiphophorus_maculatus
ENSBTAG00000020922	UPF1	100	91.578	ENSXMAG00000002540	-	100	91.489	Xiphophorus_maculatus