EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000021020 (Gene tree)
Gene ID: 541247
Gene Symbol: RIF1
Alias: -
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 49468 bases
Position: chr2:44660223-44709690
Accession: 33965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000060904	Rif1_N	PF12231.8	1.4e-46	1	1
ENSBTAP00000072721	Rif1_N	PF12231.8	1.4e-46	1	1
ENSBTAP00000068049	Rif1_N	PF12231.8	1.5e-46	1	1
ENSBTAP00000027997	Rif1_N	PF12231.8	1.5e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000072895	-	7342	-	ENSBTAP00000060904	2238 (aa)	-	-
ENSBTAT00000078429	-	7420	-	ENSBTAP00000072721	2264 (aa)	-	-
ENSBTAT00000077680	-	7489	-	ENSBTAP00000068049	2287 (aa)	-	-
ENSBTAT00000027997	-	7567	-	ENSBTAP00000027997	2313 (aa)	-	E1BCK1

Gene Model

Click here to download ENSBTAG00000021020's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000021020's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000021020	RIF1	99	79.029	ENSG00000080345	RIF1	90	90.863	Homo_sapiens
ENSBTAG00000021020	RIF1	99	82.653	ENSAMEG00000008461	RIF1	94	82.568	Ailuropoda_melanoleuca
ENSBTAG00000021020	RIF1	62	50.308	ENSACIG00000017765	rif1	63	50.308	Amphilophus_citrinellus
ENSBTAG00000021020	RIF1	63	48.010	ENSAOCG00000017231	rif1	58	49.279	Amphiprion_ocellaris
ENSBTAG00000021020	RIF1	63	57.686	ENSAPEG00000013228	rif1	56	57.686	Amphiprion_percula
ENSBTAG00000021020	RIF1	63	48.027	ENSATEG00000022887	rif1	60	48.384	Anabas_testudineus
ENSBTAG00000021020	RIF1	86	61.183	ENSAPLG00000007092	RIF1	89	61.183	Anas_platyrhynchos
ENSBTAG00000021020	RIF1	83	57.971	ENSACAG00000003714	RIF1	85	53.766	Anolis_carolinensis
ENSBTAG00000021020	RIF1	99	77.095	ENSANAG00000024840	RIF1	94	77.095	Aotus_nancymaae
ENSBTAG00000021020	RIF1	77	44.861	ENSAMXG00000010910	rif1	59	52.312	Astyanax_mexicanus
ENSBTAG00000021020	RIF1	99	76.718	ENSCJAG00000003138	RIF1	94	76.718	Callithrix_jacchus
ENSBTAG00000021020	RIF1	100	81.384	ENSCAFG00000005670	RIF1	91	81.384	Canis_familiaris
ENSBTAG00000021020	RIF1	100	80.551	ENSCAFG00020016401	RIF1	94	80.551	Canis_lupus_dingo
ENSBTAG00000021020	RIF1	100	94.600	ENSCHIG00000020327	RIF1	94	94.600	Capra_hircus
ENSBTAG00000021020	RIF1	99	77.783	ENSTSYG00000008861	RIF1	96	77.783	Carlito_syrichta
ENSBTAG00000021020	RIF1	76	83.163	ENSCAPG00000008957	RIF1	94	74.074	Cavia_aperea
ENSBTAG00000021020	RIF1	99	69.244	ENSCPOG00000037898	RIF1	94	69.244	Cavia_porcellus
ENSBTAG00000021020	RIF1	99	76.172	ENSCCAG00000024760	RIF1	94	76.172	Cebus_capucinus
ENSBTAG00000021020	RIF1	99	79.029	ENSCATG00000033353	RIF1	94	79.029	Cercocebus_atys
ENSBTAG00000021020	RIF1	99	72.427	ENSCLAG00000001517	RIF1	98	72.470	Chinchilla_lanigera
ENSBTAG00000021020	RIF1	99	79.072	ENSCSAG00000016089	RIF1	94	79.072	Chlorocebus_sabaeus
ENSBTAG00000021020	RIF1	97	88.462	ENSCHOG00000007187	RIF1	91	88.462	Choloepus_hoffmanni
ENSBTAG00000021020	RIF1	85	71.236	ENSCPBG00000025885	RIF1	85	70.048	Chrysemys_picta_bellii
ENSBTAG00000021020	RIF1	100	78.330	ENSCANG00000028962	RIF1	95	78.330	Colobus_angolensis_palliatus
ENSBTAG00000021020	RIF1	99	68.100	ENSCGRG00001024589	Rif1	94	68.414	Cricetulus_griseus_chok1gshd
ENSBTAG00000021020	RIF1	99	69.330	ENSCGRG00000010713	Rif1	95	69.644	Cricetulus_griseus_crigri
ENSBTAG00000021020	RIF1	56	66.038	ENSCSEG00000003945	rif1	52	66.038	Cynoglossus_semilaevis
ENSBTAG00000021020	RIF1	64	47.771	ENSCVAG00000022479	rif1	63	48.443	Cyprinodon_variegatus
ENSBTAG00000021020	RIF1	100	75.494	ENSDNOG00000011194	RIF1	91	75.494	Dasypus_novemcinctus
ENSBTAG00000021020	RIF1	94	72.959	ENSETEG00000012421	RIF1	86	72.298	Echinops_telfairi
ENSBTAG00000021020	RIF1	95	98.077	ENSEASG00005023434	RIF1	95	98.077	Equus_asinus_asinus
ENSBTAG00000021020	RIF1	96	94.291	ENSECAG00000012679	RIF1	94	94.291	Equus_caballus
ENSBTAG00000021020	RIF1	61	51.885	ENSELUG00000006826	rif1	50	51.436	Esox_lucius
ENSBTAG00000021020	RIF1	99	82.511	ENSFCAG00000029742	RIF1	94	82.060	Felis_catus
ENSBTAG00000021020	RIF1	81	64.103	ENSFALG00000013874	RIF1	89	64.744	Ficedula_albicollis
ENSBTAG00000021020	RIF1	99	73.216	ENSFDAG00000006538	RIF1	93	73.044	Fukomys_damarensis
ENSBTAG00000021020	RIF1	59	55.172	ENSFHEG00000013721	rif1	58	55.172	Fundulus_heteroclitus
ENSBTAG00000021020	RIF1	52	49.262	ENSGMOG00000003517	rif1	71	49.262	Gadus_morhua
ENSBTAG00000021020	RIF1	88	56.459	ENSGALG00000012484	RIF1	99	53.138	Gallus_gallus
ENSBTAG00000021020	RIF1	64	50.586	ENSGAFG00000017196	rif1	64	55.370	Gambusia_affinis
ENSBTAG00000021020	RIF1	55	59.542	ENSGACG00000008579	rif1	59	55.200	Gasterosteus_aculeatus
ENSBTAG00000021020	RIF1	82	73.604	ENSGAGG00000012595	RIF1	81	73.604	Gopherus_agassizii
ENSBTAG00000021020	RIF1	89	91.209	ENSGGOG00000040178	RIF1	90	91.209	Gorilla_gorilla
ENSBTAG00000021020	RIF1	68	60.656	ENSHBUG00000007125	rif1	54	60.656	Haplochromis_burtoni
ENSBTAG00000021020	RIF1	94	72.653	ENSHGLG00100009807	RIF1	93	72.698	Heterocephalus_glaber_male
ENSBTAG00000021020	RIF1	61	49.502	ENSHCOG00000015943	rif1	54	49.683	Hippocampus_comes
ENSBTAG00000021020	RIF1	63	51.097	ENSIPUG00000021703	rif1	59	50.450	Ictalurus_punctatus
ENSBTAG00000021020	RIF1	99	88.325	ENSSTOG00000020712	RIF1	94	76.055	Ictidomys_tridecemlineatus
ENSBTAG00000021020	RIF1	99	69.350	ENSJJAG00000023000	Rif1	95	69.522	Jaculus_jaculus
ENSBTAG00000021020	RIF1	61	51.079	ENSKMAG00000002852	rif1	60	51.079	Kryptolebias_marmoratus
ENSBTAG00000021020	RIF1	59	52.857	ENSLBEG00000023196	rif1	51	51.426	Labrus_bergylta
ENSBTAG00000021020	RIF1	84	62.687	ENSLACG00000005425	RIF1	82	62.687	Latimeria_chalumnae
ENSBTAG00000021020	RIF1	65	55.596	ENSLOCG00000002657	rif1	81	47.782	Lepisosteus_oculatus
ENSBTAG00000021020	RIF1	99	76.797	ENSLAFG00000009796	RIF1	94	76.797	Loxodonta_africana
ENSBTAG00000021020	RIF1	99	78.943	ENSMFAG00000032233	RIF1	94	78.943	Macaca_fascicularis
ENSBTAG00000021020	RIF1	99	79.072	ENSMMUG00000008611	RIF1	94	79.072	Macaca_mulatta
ENSBTAG00000021020	RIF1	99	79.072	ENSMNEG00000031616	RIF1	94	79.072	Macaca_nemestrina
ENSBTAG00000021020	RIF1	99	79.029	ENSMLEG00000042945	RIF1	94	79.029	Mandrillus_leucophaeus
ENSBTAG00000021020	RIF1	72	48.815	ENSMAMG00000001745	rif1	77	52.632	Mastacembelus_armatus
ENSBTAG00000021020	RIF1	62	51.724	ENSMZEG00005020920	rif1	63	51.378	Maylandia_zebra
ENSBTAG00000021020	RIF1	84	59.280	ENSMGAG00000012732	RIF1	94	54.154	Meleagris_gallopavo
ENSBTAG00000021020	RIF1	94	94.634	ENSMAUG00000013158	Rif1	92	94.634	Mesocricetus_auratus
ENSBTAG00000021020	RIF1	100	80.909	ENSMICG00000046127	RIF1	94	80.909	Microcebus_murinus
ENSBTAG00000021020	RIF1	99	68.491	ENSMOCG00000009381	Rif1	94	68.491	Microtus_ochrogaster
ENSBTAG00000021020	RIF1	59	55.172	ENSMMOG00000006519	rif1	56	55.172	Mola_mola
ENSBTAG00000021020	RIF1	99	59.940	ENSMODG00000003703	RIF1	94	59.812	Monodelphis_domestica
ENSBTAG00000021020	RIF1	61	49.182	ENSMALG00000016759	rif1	65	49.091	Monopterus_albus
ENSBTAG00000021020	RIF1	99	68.747	MGP_CAROLIEiJ_G0023555	Rif1	94	68.632	Mus_caroli
ENSBTAG00000021020	RIF1	99	68.983	ENSMUSG00000036202	Rif1	94	68.983	Mus_musculus
ENSBTAG00000021020	RIF1	99	86.224	MGP_PahariEiJ_G0025006	Rif1	91	86.224	Mus_pahari
ENSBTAG00000021020	RIF1	99	68.632	MGP_SPRETEiJ_G0024476	Rif1	94	68.890	Mus_spretus
ENSBTAG00000021020	RIF1	99	81.435	ENSMPUG00000000371	RIF1	94	81.435	Mustela_putorius_furo
ENSBTAG00000021020	RIF1	95	89.796	ENSMLUG00000003376	RIF1	97	89.796	Myotis_lucifugus
ENSBTAG00000021020	RIF1	99	71.626	ENSNGAG00000009268	Rif1	93	71.545	Nannospalax_galili
ENSBTAG00000021020	RIF1	74	45.511	ENSNBRG00000014257	rif1	62	49.823	Neolamprologus_brichardi
ENSBTAG00000021020	RIF1	99	78.618	ENSNLEG00000010955	RIF1	93	78.618	Nomascus_leucogenys
ENSBTAG00000021020	RIF1	78	78.125	ENSMEUG00000007601	-	80	78.125	Notamacropus_eugenii
ENSBTAG00000021020	RIF1	99	69.739	ENSODEG00000003950	RIF1	94	70.210	Octodon_degus
ENSBTAG00000021020	RIF1	52	51.786	ENSONIG00000013657	rif1	54	51.786	Oreochromis_niloticus
ENSBTAG00000021020	RIF1	75	76.727	ENSOANG00000006078	-	73	76.727	Ornithorhynchus_anatinus
ENSBTAG00000021020	RIF1	99	75.838	ENSOCUG00000017435	RIF1	94	75.871	Oryctolagus_cuniculus
ENSBTAG00000021020	RIF1	60	49.176	ENSORLG00020001302	rif1	61	48.559	Oryzias_latipes_hni
ENSBTAG00000021020	RIF1	60	49.267	ENSORLG00015000009	rif1	60	48.829	Oryzias_latipes_hsok
ENSBTAG00000021020	RIF1	60	49.453	ENSOMEG00000021513	rif1	60	48.571	Oryzias_melastigma
ENSBTAG00000021020	RIF1	99	77.663	ENSOGAG00000006141	RIF1	94	77.491	Otolemur_garnettii
ENSBTAG00000021020	RIF1	100	94.905	ENSOARG00000008930	RIF1	94	94.905	Ovis_aries
ENSBTAG00000021020	RIF1	99	78.866	ENSPPAG00000023754	RIF1	94	78.866	Pan_paniscus
ENSBTAG00000021020	RIF1	99	82.511	ENSPPRG00000003618	RIF1	94	81.717	Panthera_pardus
ENSBTAG00000021020	RIF1	99	82.511	ENSPTIG00000020652	RIF1	94	81.760	Panthera_tigris_altaica
ENSBTAG00000021020	RIF1	99	78.909	ENSPTRG00000012534	RIF1	94	78.909	Pan_troglodytes
ENSBTAG00000021020	RIF1	99	78.986	ENSPANG00000008525	RIF1	94	78.986	Papio_anubis
ENSBTAG00000021020	RIF1	70	51.360	ENSPKIG00000004267	rif1	63	52.920	Paramormyrops_kingsleyae
ENSBTAG00000021020	RIF1	63	46.000	ENSPMGG00000016141	rif1	71	45.009	Periophthalmus_magnuspinnatus
ENSBTAG00000021020	RIF1	99	70.776	ENSPEMG00000000446	Rif1	94	70.733	Peromyscus_maniculatus_bairdii
ENSBTAG00000021020	RIF1	99	58.950	ENSPCIG00000009185	RIF1	93	59.211	Phascolarctos_cinereus
ENSBTAG00000021020	RIF1	64	51.268	ENSPFOG00000000554	-	50	51.087	Poecilia_formosa
ENSBTAG00000021020	RIF1	66	50.259	ENSPLAG00000017945	rif1	69	51.526	Poecilia_latipinna
ENSBTAG00000021020	RIF1	66	49.732	ENSPREG00000018052	rif1	62	55.462	Poecilia_reticulata
ENSBTAG00000021020	RIF1	99	78.986	ENSPPYG00000012846	RIF1	94	78.986	Pongo_abelii
ENSBTAG00000021020	RIF1	81	88.776	ENSPCAG00000009032	RIF1	76	86.408	Procavia_capensis
ENSBTAG00000021020	RIF1	100	81.038	ENSPCOG00000027888	RIF1	94	81.038	Propithecus_coquereli
ENSBTAG00000021020	RIF1	92	93.510	ENSPVAG00000014276	RIF1	89	93.510	Pteropus_vampyrus
ENSBTAG00000021020	RIF1	62	51.724	ENSPNYG00000012940	rif1	62	49.288	Pundamilia_nyererei
ENSBTAG00000021020	RIF1	63	53.741	ENSPNAG00000016685	rif1	52	53.558	Pygocentrus_nattereri
ENSBTAG00000021020	RIF1	99	67.854	ENSRNOG00000054901	Rif1	94	67.854	Rattus_norvegicus
ENSBTAG00000021020	RIF1	99	78.255	ENSRBIG00000003704	RIF1	94	78.255	Rhinopithecus_bieti
ENSBTAG00000021020	RIF1	99	79.244	ENSRROG00000028206	RIF1	94	79.244	Rhinopithecus_roxellana
ENSBTAG00000021020	RIF1	99	76.651	ENSSBOG00000029530	RIF1	96	76.651	Saimiri_boliviensis_boliviensis
ENSBTAG00000021020	RIF1	99	59.310	ENSSHAG00000018552	RIF1	100	58.829	Sarcophilus_harrisii
ENSBTAG00000021020	RIF1	63	52.361	ENSSFOG00015021539	rif1	66	50.914	Scleropages_formosus
ENSBTAG00000021020	RIF1	60	49.648	ENSSMAG00000011704	rif1	61	49.515	Scophthalmus_maximus
ENSBTAG00000021020	RIF1	61	52.311	ENSSDUG00000015632	rif1	65	51.534	Seriola_dumerili
ENSBTAG00000021020	RIF1	56	51.315	ENSSLDG00000019531	rif1	60	50.394	Seriola_lalandi_dorsalis
ENSBTAG00000021020	RIF1	60	87.817	ENSSARG00000007161	-	55	87.817	Sorex_araneus
ENSBTAG00000021020	RIF1	90	69.192	ENSSPUG00000003062	RIF1	89	69.192	Sphenodon_punctatus
ENSBTAG00000021020	RIF1	100	84.500	ENSSSCG00000016395	RIF1	91	95.939	Sus_scrofa
ENSBTAG00000021020	RIF1	66	50.642	ENSTRUG00000015808	rif1	68	50.642	Takifugu_rubripes
ENSBTAG00000021020	RIF1	63	50.610	ENSTNIG00000011538	rif1	61	48.949	Tetraodon_nigroviridis
ENSBTAG00000021020	RIF1	84	89.873	ENSTBEG00000016082	RIF1	76	89.873	Tupaia_belangeri
ENSBTAG00000021020	RIF1	100	88.109	ENSTTRG00000011190	RIF1	94	88.109	Tursiops_truncatus
ENSBTAG00000021020	RIF1	92	90.013	ENSUAMG00000026385	RIF1	97	90.013	Ursus_americanus
ENSBTAG00000021020	RIF1	100	83.154	ENSUMAG00000000337	RIF1	93	91.667	Ursus_maritimus
ENSBTAG00000021020	RIF1	100	83.039	ENSVPAG00000002162	RIF1	94	83.039	Vicugna_pacos
ENSBTAG00000021020	RIF1	100	80.895	ENSVVUG00000011293	RIF1	94	80.895	Vulpes_vulpes
ENSBTAG00000021020	RIF1	99	60.177	ENSXETG00000004530	rif1	92	60.177	Xenopus_tropicalis
ENSBTAG00000021020	RIF1	61	49.319	ENSXMAG00000000506	rif1	65	49.591	Xiphophorus_maculatus