EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000031146 (Gene tree)
Gene ID: 787259
Gene Symbol: PYM1
Alias: -
Full Name: PYM homolog 1%2C exon junction complex associated factor
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 21326 bases
Position: chr5:57378226-57399551
Accession: 33592
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000041588	Mago-bind	PF09282.10	9.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000044075	-	1820	-	ENSBTAP00000041588	203 (aa)	-	A6QPH1

Gene Model

Click here to download ENSBTAG00000031146's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000031146's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000031146	PYM1	94	95.812	ENSG00000170473	PYM1	94	95.812	Homo_sapiens
ENSBTAG00000031146	PYM1	99	59.346	ENSAPOG00000023045	pym1	94	59.512	Acanthochromis_polyacanthus
ENSBTAG00000031146	PYM1	93	89.894	ENSAMEG00000003091	PYM1	93	89.894	Ailuropoda_melanoleuca
ENSBTAG00000031146	PYM1	99	62.037	ENSACIG00000012769	pym1	94	60.386	Amphilophus_citrinellus
ENSBTAG00000031146	PYM1	99	58.768	ENSAOCG00000021358	pym1	94	59.804	Amphiprion_ocellaris
ENSBTAG00000031146	PYM1	99	58.768	ENSAPEG00000022679	pym1	94	59.804	Amphiprion_percula
ENSBTAG00000031146	PYM1	99	58.216	ENSATEG00000024022	pym1	94	61.463	Anabas_testudineus
ENSBTAG00000031146	PYM1	94	69.268	ENSACAG00000005714	PYM1	94	69.268	Anolis_carolinensis
ENSBTAG00000031146	PYM1	94	94.764	ENSANAG00000036967	PYM1	94	94.764	Aotus_nancymaae
ENSBTAG00000031146	PYM1	100	57.339	ENSAMXG00000007650	pym1	94	59.223	Astyanax_mexicanus
ENSBTAG00000031146	PYM1	94	94.764	ENSCJAG00000041077	PYM1	94	94.764	Callithrix_jacchus
ENSBTAG00000031146	PYM1	100	97.044	ENSCAFG00000000076	PYM1	100	97.044	Canis_familiaris
ENSBTAG00000031146	PYM1	100	97.044	ENSCAFG00020026099	PYM1	100	97.044	Canis_lupus_dingo
ENSBTAG00000031146	PYM1	100	97.537	ENSCHIG00000026207	PYM1	100	97.537	Capra_hircus
ENSBTAG00000031146	PYM1	94	92.670	ENSTSYG00000000787	PYM1	94	92.670	Carlito_syrichta
ENSBTAG00000031146	PYM1	88	89.944	ENSCAPG00000010374	PYM1	94	89.944	Cavia_aperea
ENSBTAG00000031146	PYM1	94	90.576	ENSCPOG00000031546	PYM1	94	90.576	Cavia_porcellus
ENSBTAG00000031146	PYM1	94	95.288	ENSCCAG00000026187	PYM1	94	95.288	Cebus_capucinus
ENSBTAG00000031146	PYM1	94	95.288	ENSCATG00000018801	PYM1	94	95.288	Cercocebus_atys
ENSBTAG00000031146	PYM1	94	87.435	ENSCLAG00000007964	PYM1	94	87.435	Chinchilla_lanigera
ENSBTAG00000031146	PYM1	89	95.000	ENSCSAG00000005291	PYM1	92	95.000	Chlorocebus_sabaeus
ENSBTAG00000031146	PYM1	98	40.385	ENSCING00000006448	-	93	38.693	Ciona_intestinalis
ENSBTAG00000031146	PYM1	98	39.423	ENSCSAVG00000009805	-	89	41.089	Ciona_savignyi
ENSBTAG00000031146	PYM1	94	95.288	ENSCANG00000020338	-	94	95.288	Colobus_angolensis_palliatus
ENSBTAG00000031146	PYM1	98	86.869	ENSCANG00000019757	-	86	91.579	Colobus_angolensis_palliatus
ENSBTAG00000031146	PYM1	94	87.958	ENSCGRG00001018051	-	94	87.958	Cricetulus_griseus_chok1gshd
ENSBTAG00000031146	PYM1	94	72.775	ENSCGRG00001004231	-	93	72.775	Cricetulus_griseus_chok1gshd
ENSBTAG00000031146	PYM1	94	72.775	ENSCGRG00000018933	-	93	72.775	Cricetulus_griseus_crigri
ENSBTAG00000031146	PYM1	94	87.958	ENSCGRG00000012495	-	94	87.958	Cricetulus_griseus_crigri
ENSBTAG00000031146	PYM1	94	55.882	ENSCSEG00000021531	pym1	94	58.824	Cynoglossus_semilaevis
ENSBTAG00000031146	PYM1	94	61.692	ENSCVAG00000017360	pym1	81	61.458	Cyprinodon_variegatus
ENSBTAG00000031146	PYM1	99	57.000	ENSDARG00000046024	pym1	94	54.106	Danio_rerio
ENSBTAG00000031146	PYM1	94	91.623	ENSDNOG00000048414	PYM1	86	91.623	Dasypus_novemcinctus
ENSBTAG00000031146	PYM1	94	93.194	ENSDORG00000029448	Pym1	94	93.194	Dipodomys_ordii
ENSBTAG00000031146	PYM1	93	33.981	FBgn0034918	Pym	88	33.846	Drosophila_melanogaster
ENSBTAG00000031146	PYM1	89	87.222	ENSETEG00000004461	-	94	87.222	Echinops_telfairi
ENSBTAG00000031146	PYM1	93	91.489	ENSEASG00005002271	PYM1	85	91.489	Equus_asinus_asinus
ENSBTAG00000031146	PYM1	94	95.812	ENSECAG00000011870	PYM1	94	95.812	Equus_caballus
ENSBTAG00000031146	PYM1	96	58.794	ENSELUG00000024250	pym1	94	59.596	Esox_lucius
ENSBTAG00000031146	PYM1	94	95.288	ENSFCAG00000013967	PYM1	94	95.288	Felis_catus
ENSBTAG00000031146	PYM1	94	91.099	ENSFDAG00000006314	PYM1	94	91.099	Fukomys_damarensis
ENSBTAG00000031146	PYM1	94	59.406	ENSFHEG00000005884	pym1	94	59.406	Fundulus_heteroclitus
ENSBTAG00000031146	PYM1	94	56.650	ENSGMOG00000007239	pym1	93	56.650	Gadus_morhua
ENSBTAG00000031146	PYM1	94	70.769	ENSGALG00000046169	PYM1	94	70.769	Gallus_gallus
ENSBTAG00000031146	PYM1	99	61.502	ENSGAFG00000003280	pym1	93	61.692	Gambusia_affinis
ENSBTAG00000031146	PYM1	100	55.825	ENSGACG00000010703	pym1	94	56.410	Gasterosteus_aculeatus
ENSBTAG00000031146	PYM1	92	64.851	ENSGAGG00000001973	PYM1	88	65.347	Gopherus_agassizii
ENSBTAG00000031146	PYM1	94	95.288	ENSGGOG00000043246	PYM1	94	95.288	Gorilla_gorilla
ENSBTAG00000031146	PYM1	94	61.275	ENSHBUG00000012719	pym1	94	61.275	Haplochromis_burtoni
ENSBTAG00000031146	PYM1	94	92.147	ENSHGLG00000017155	PYM1	94	92.147	Heterocephalus_glaber_female
ENSBTAG00000031146	PYM1	94	92.147	ENSHGLG00100015341	PYM1	94	92.147	Heterocephalus_glaber_male
ENSBTAG00000031146	PYM1	99	57.009	ENSHCOG00000007987	pym1	80	57.426	Hippocampus_comes
ENSBTAG00000031146	PYM1	100	58.986	ENSIPUG00000005975	wibga	94	59.223	Ictalurus_punctatus
ENSBTAG00000031146	PYM1	94	94.241	ENSSTOG00000014206	PYM1	94	94.241	Ictidomys_tridecemlineatus
ENSBTAG00000031146	PYM1	94	88.482	ENSJJAG00000013338	Pym1	94	88.482	Jaculus_jaculus
ENSBTAG00000031146	PYM1	99	57.658	ENSKMAG00000006351	pym1	95	56.808	Kryptolebias_marmoratus
ENSBTAG00000031146	PYM1	99	60.577	ENSLBEG00000015707	pym1	93	60.714	Labrus_bergylta
ENSBTAG00000031146	PYM1	89	62.827	ENSLACG00000014398	PYM1	89	62.371	Latimeria_chalumnae
ENSBTAG00000031146	PYM1	94	93.194	ENSLAFG00000002369	PYM1	94	93.194	Loxodonta_africana
ENSBTAG00000031146	PYM1	94	95.288	ENSMFAG00000003048	PYM1	94	95.288	Macaca_fascicularis
ENSBTAG00000031146	PYM1	94	95.288	ENSMMUG00000011002	PYM1	94	95.288	Macaca_mulatta
ENSBTAG00000031146	PYM1	94	95.288	ENSMNEG00000034677	PYM1	94	95.288	Macaca_nemestrina
ENSBTAG00000031146	PYM1	94	95.288	ENSMLEG00000007971	PYM1	94	95.288	Mandrillus_leucophaeus
ENSBTAG00000031146	PYM1	99	55.357	ENSMAMG00000001588	pym1	94	57.209	Mastacembelus_armatus
ENSBTAG00000031146	PYM1	94	60.784	ENSMZEG00005026458	pym1	94	60.784	Maylandia_zebra
ENSBTAG00000031146	PYM1	94	88.482	ENSMAUG00000007318	Pym1	94	88.482	Mesocricetus_auratus
ENSBTAG00000031146	PYM1	94	93.194	ENSMICG00000032962	PYM1	94	93.194	Microcebus_murinus
ENSBTAG00000031146	PYM1	94	86.911	ENSMOCG00000010208	Pym1	94	86.911	Microtus_ochrogaster
ENSBTAG00000031146	PYM1	99	58.738	ENSMMOG00000009301	pym1	92	60.825	Mola_mola
ENSBTAG00000031146	PYM1	99	59.524	ENSMALG00000013496	pym1	94	59.204	Monopterus_albus
ENSBTAG00000031146	PYM1	94	87.958	MGP_CAROLIEiJ_G0015953	Pym1	94	87.958	Mus_caroli
ENSBTAG00000031146	PYM1	94	89.005	ENSMUSG00000064030	Pym1	94	89.005	Mus_musculus
ENSBTAG00000031146	PYM1	94	87.435	MGP_PahariEiJ_G0031131	Pym1	94	87.435	Mus_pahari
ENSBTAG00000031146	PYM1	94	89.005	MGP_SPRETEiJ_G0016778	Pym1	94	89.005	Mus_spretus
ENSBTAG00000031146	PYM1	100	96.552	ENSMPUG00000000931	PYM1	100	96.552	Mustela_putorius_furo
ENSBTAG00000031146	PYM1	94	87.435	ENSMLUG00000003586	PYM1	94	87.435	Myotis_lucifugus
ENSBTAG00000031146	PYM1	89	90.556	ENSNGAG00000019207	Pym1	87	90.556	Nannospalax_galili
ENSBTAG00000031146	PYM1	99	61.972	ENSNBRG00000006951	pym1	94	61.275	Neolamprologus_brichardi
ENSBTAG00000031146	PYM1	94	95.812	ENSNLEG00000017588	PYM1	94	95.812	Nomascus_leucogenys
ENSBTAG00000031146	PYM1	88	79.213	ENSMEUG00000001017	PYM1	93	79.096	Notamacropus_eugenii
ENSBTAG00000031146	PYM1	89	90.000	ENSOPRG00000007797	PYM1	88	90.000	Ochotona_princeps
ENSBTAG00000031146	PYM1	94	92.147	ENSODEG00000004289	PYM1	94	92.147	Octodon_degus
ENSBTAG00000031146	PYM1	94	60.386	ENSONIG00000016740	pym1	94	60.386	Oreochromis_niloticus
ENSBTAG00000031146	PYM1	89	91.667	ENSOCUG00000025969	PYM1	81	91.667	Oryctolagus_cuniculus
ENSBTAG00000031146	PYM1	99	62.441	ENSORLG00000030592	pym1	94	62.069	Oryzias_latipes
ENSBTAG00000031146	PYM1	99	61.860	ENSORLG00020011264	pym1	94	61.951	Oryzias_latipes_hni
ENSBTAG00000031146	PYM1	99	63.208	ENSORLG00015005287	pym1	94	62.871	Oryzias_latipes_hsok
ENSBTAG00000031146	PYM1	99	63.768	ENSOMEG00000022250	pym1	94	63.131	Oryzias_melastigma
ENSBTAG00000031146	PYM1	89	95.556	ENSOGAG00000007038	PYM1	90	93.478	Otolemur_garnettii
ENSBTAG00000031146	PYM1	100	98.030	ENSOARG00000010856	PYM1	100	98.030	Ovis_aries
ENSBTAG00000031146	PYM1	94	95.812	ENSPPAG00000043630	PYM1	94	95.812	Pan_paniscus
ENSBTAG00000031146	PYM1	94	93.717	ENSPPRG00000013243	PYM1	94	93.717	Panthera_pardus
ENSBTAG00000031146	PYM1	94	93.194	ENSPTIG00000017380	PYM1	94	93.194	Panthera_tigris_altaica
ENSBTAG00000031146	PYM1	94	95.812	ENSPTRG00000005067	PYM1	94	95.812	Pan_troglodytes
ENSBTAG00000031146	PYM1	94	94.764	ENSPANG00000009562	PYM1	94	94.764	Papio_anubis
ENSBTAG00000031146	PYM1	100	61.321	ENSPKIG00000006301	pym1	94	61.500	Paramormyrops_kingsleyae
ENSBTAG00000031146	PYM1	89	65.608	ENSPSIG00000003043	PYM1	90	65.608	Pelodiscus_sinensis
ENSBTAG00000031146	PYM1	100	61.722	ENSPMGG00000023161	pym1	94	61.929	Periophthalmus_magnuspinnatus
ENSBTAG00000031146	PYM1	94	86.911	ENSPEMG00000009372	Pym1	94	86.911	Peromyscus_maniculatus_bairdii
ENSBTAG00000031146	PYM1	92	79.032	ENSPCIG00000024658	PYM1	91	78.723	Phascolarctos_cinereus
ENSBTAG00000031146	PYM1	99	61.611	ENSPFOG00000008193	pym1	93	61.576	Poecilia_formosa
ENSBTAG00000031146	PYM1	99	60.664	ENSPLAG00000009228	pym1	93	60.591	Poecilia_latipinna
ENSBTAG00000031146	PYM1	99	60.664	ENSPMEG00000001505	pym1	93	60.591	Poecilia_mexicana
ENSBTAG00000031146	PYM1	89	93.889	ENSPPYG00000004635	PYM1	92	93.889	Pongo_abelii
ENSBTAG00000031146	PYM1	94	94.241	ENSPCOG00000019706	PYM1	94	94.241	Propithecus_coquereli
ENSBTAG00000031146	PYM1	89	96.111	ENSPVAG00000011437	PYM1	92	96.111	Pteropus_vampyrus
ENSBTAG00000031146	PYM1	94	61.576	ENSPNYG00000012871	pym1	94	61.084	Pundamilia_nyererei
ENSBTAG00000031146	PYM1	99	59.174	ENSPNAG00000018833	pym1	94	59.809	Pygocentrus_nattereri
ENSBTAG00000031146	PYM1	92	65.775	ENSRNOG00000049415	AABR07055413.1	91	60.638	Rattus_norvegicus
ENSBTAG00000031146	PYM1	94	82.812	ENSRNOG00000058130	Pym1	94	82.812	Rattus_norvegicus
ENSBTAG00000031146	PYM1	94	90.576	ENSRBIG00000033362	PYM1	94	90.576	Rhinopithecus_bieti
ENSBTAG00000031146	PYM1	94	95.288	ENSRROG00000043620	PYM1	94	95.288	Rhinopithecus_roxellana
ENSBTAG00000031146	PYM1	94	95.288	ENSSBOG00000029393	PYM1	94	95.288	Saimiri_boliviensis_boliviensis
ENSBTAG00000031146	PYM1	93	80.423	ENSSHAG00000008280	PYM1	93	80.423	Sarcophilus_harrisii
ENSBTAG00000031146	PYM1	93	63.918	ENSSFOG00015021475	pym1	94	63.452	Scleropages_formosus
ENSBTAG00000031146	PYM1	99	58.294	ENSSMAG00000020912	pym1	94	59.901	Scophthalmus_maximus
ENSBTAG00000031146	PYM1	99	57.407	ENSSDUG00000001807	pym1	94	60.476	Seriola_dumerili
ENSBTAG00000031146	PYM1	99	60.976	ENSSLDG00000013730	pym1	94	63.317	Seriola_lalandi_dorsalis
ENSBTAG00000031146	PYM1	89	89.444	ENSSARG00000009569	PYM1	94	89.444	Sorex_araneus
ENSBTAG00000031146	PYM1	89	65.241	ENSSPUG00000015059	PYM1	90	65.241	Sphenodon_punctatus
ENSBTAG00000031146	PYM1	99	58.411	ENSSPAG00000020100	pym1	94	59.135	Stegastes_partitus
ENSBTAG00000031146	PYM1	94	95.812	ENSSSCG00000040825	PYM1	94	95.812	Sus_scrofa
ENSBTAG00000031146	PYM1	99	60.577	ENSTRUG00000021367	pym1	93	61.735	Takifugu_rubripes
ENSBTAG00000031146	PYM1	99	55.455	ENSTNIG00000012534	pym1	92	51.942	Tetraodon_nigroviridis
ENSBTAG00000031146	PYM1	89	87.222	ENSTBEG00000004208	PYM1	94	87.222	Tupaia_belangeri
ENSBTAG00000031146	PYM1	95	97.396	ENSTTRG00000014971	PYM1	98	97.396	Tursiops_truncatus
ENSBTAG00000031146	PYM1	94	94.241	ENSUAMG00000014521	PYM1	94	94.241	Ursus_americanus
ENSBTAG00000031146	PYM1	91	91.351	ENSUMAG00000016241	PYM1	84	91.351	Ursus_maritimus
ENSBTAG00000031146	PYM1	94	96.335	ENSVVUG00000022749	PYM1	94	96.335	Vulpes_vulpes
ENSBTAG00000031146	PYM1	94	61.856	ENSXETG00000021850	pym1	94	62.755	Xenopus_tropicalis
ENSBTAG00000031146	PYM1	99	60.664	ENSXMAG00000011649	pym1	93	60.804	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISS	Process
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0030054	cell junction	-	IEA	Component
GO:0035145	exon-exon junction complex	-	ISS	Component
GO:0043022	ribosome binding	-	ISS	Function
GO:0045727	positive regulation of translation	-	ISS	Process