EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000031688 (Gene tree)
Gene ID: 767937
Gene Symbol: RBM4
Alias: -
Full Name: Bos taurus RNA binding motif protein 4 (RBM4)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 7752 bases
Position: chr29:44669850-44677601
Accession: NM_001077010
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000000541	zf-CCHC	PF00098.23	2.2e-07	1	1
ENSBTAP00000062182	zf-CCHC	PF00098.23	2.2e-07	1	1
ENSBTAP00000000541	RRM_5	PF13893.6	4.6e-08	1	2
ENSBTAP00000000541	RRM_5	PF13893.6	4.6e-08	2	2
ENSBTAP00000062182	RRM_5	PF13893.6	4.6e-08	1	2
ENSBTAP00000062182	RRM_5	PF13893.6	4.6e-08	2	2
ENSBTAP00000000541	RRM_1	PF00076.22	2.4e-34	1	2
ENSBTAP00000000541	RRM_1	PF00076.22	2.4e-34	2	2
ENSBTAP00000062182	RRM_1	PF00076.22	2.4e-34	1	2
ENSBTAP00000062182	RRM_1	PF00076.22	2.4e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000000541	-	1561	-	ENSBTAP00000000541	362 (aa)	XP_024843128	Q3MHX3
ENSBTAT00000071147	-	1274	-	ENSBTAP00000062182	362 (aa)	XP_024843128	UPI00005B638D

Gene Model

Click here to download ENSBTAG00000031688's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000031688's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000031688	RBM4	100	89.503	ENSBTAG00000000423	RBM4B	100	88.950

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000031688	RBM4	100	97.253	ENSG00000173933	RBM4	100	97.253	Homo_sapiens
ENSBTAG00000031688	RBM4	100	88.674	ENSG00000173914	RBM4B	97	97.842	Homo_sapiens
ENSBTAG00000031688	RBM4	99	71.781	ENSG00000248643	RBM14-RBM4	100	71.233	Homo_sapiens
ENSBTAG00000031688	RBM4	100	88.950	ENSAMEG00000010906	RBM4B	100	88.674	Ailuropoda_melanoleuca
ENSBTAG00000031688	RBM4	100	97.534	ENSAMEG00000010914	RBM4	100	97.534	Ailuropoda_melanoleuca
ENSBTAG00000031688	RBM4	100	88.398	ENSANAG00000023478	RBM4B	97	97.842	Aotus_nancymaae
ENSBTAG00000031688	RBM4	100	88.398	ENSCJAG00000013666	RBM4B	97	97.842	Callithrix_jacchus
ENSBTAG00000031688	RBM4	100	97.534	ENSCAFG00000012388	RBM4	100	97.534	Canis_familiaris
ENSBTAG00000031688	RBM4	100	88.674	ENSCAFG00000012378	RBM4B	100	88.398	Canis_familiaris
ENSBTAG00000031688	RBM4	100	97.534	ENSCAFG00020015515	RBM4	100	97.534	Canis_lupus_dingo
ENSBTAG00000031688	RBM4	100	88.674	ENSCAFG00020015519	RBM4B	100	88.398	Canis_lupus_dingo
ENSBTAG00000031688	RBM4	100	100.000	ENSCHIG00000020613	RBM4	100	100.000	Capra_hircus
ENSBTAG00000031688	RBM4	100	89.503	ENSCHIG00000008907	RBM4B	100	88.950	Capra_hircus
ENSBTAG00000031688	RBM4	66	80.672	ENSTSYG00000009580	RBM4B	96	79.832	Carlito_syrichta
ENSBTAG00000031688	RBM4	100	88.950	ENSCAPG00000009570	RBM4B	100	88.398	Cavia_aperea
ENSBTAG00000031688	RBM4	100	97.260	ENSCAPG00000016600	RBM4	100	97.260	Cavia_aperea
ENSBTAG00000031688	RBM4	100	97.260	ENSCPOG00000013194	RBM4	100	97.260	Cavia_porcellus
ENSBTAG00000031688	RBM4	100	88.950	ENSCPOG00000013689	RBM4B	100	88.398	Cavia_porcellus
ENSBTAG00000031688	RBM4	55	73.134	ENSCCAG00000023319	-	100	73.134	Cebus_capucinus
ENSBTAG00000031688	RBM4	100	88.674	ENSCCAG00000016501	RBM4B	97	97.842	Cebus_capucinus
ENSBTAG00000031688	RBM4	100	88.674	ENSCATG00000035353	RBM4B	97	97.842	Cercocebus_atys
ENSBTAG00000031688	RBM4	100	88.674	ENSCLAG00000015287	RBM4B	100	88.122	Chinchilla_lanigera
ENSBTAG00000031688	RBM4	100	96.986	ENSCLAG00000014756	RBM4	100	96.986	Chinchilla_lanigera
ENSBTAG00000031688	RBM4	100	88.674	ENSCSAG00000008361	RBM4B	100	88.122	Chlorocebus_sabaeus
ENSBTAG00000031688	RBM4	62	95.154	ENSCHOG00000009753	RBM14-RBM4	100	94.273	Choloepus_hoffmanni
ENSBTAG00000031688	RBM4	100	89.779	ENSCHOG00000002892	RBM4B	100	89.227	Choloepus_hoffmanni
ENSBTAG00000031688	RBM4	100	75.328	ENSCPBG00000023800	-	100	75.263	Chrysemys_picta_bellii
ENSBTAG00000031688	RBM4	100	88.674	ENSCANG00000021868	RBM4B	97	97.842	Colobus_angolensis_palliatus
ENSBTAG00000031688	RBM4	100	95.304	ENSCGRG00001016609	-	100	95.580	Cricetulus_griseus_chok1gshd
ENSBTAG00000031688	RBM4	100	85.635	ENSCGRG00001024693	Rbm4b	100	86.188	Cricetulus_griseus_chok1gshd
ENSBTAG00000031688	RBM4	100	85.635	ENSCGRG00000012112	Rbm4b	100	86.188	Cricetulus_griseus_crigri
ENSBTAG00000031688	RBM4	100	95.304	ENSCGRG00000010183	-	100	95.580	Cricetulus_griseus_crigri
ENSBTAG00000031688	RBM4	100	88.122	ENSDNOG00000045639	-	100	87.569	Dasypus_novemcinctus
ENSBTAG00000031688	RBM4	100	96.986	ENSDNOG00000032390	RBM4	100	96.986	Dasypus_novemcinctus
ENSBTAG00000031688	RBM4	100	89.227	ENSDNOG00000019500	-	100	88.674	Dasypus_novemcinctus
ENSBTAG00000031688	RBM4	100	94.751	ENSDORG00000004538	-	97	97.826	Dipodomys_ordii
ENSBTAG00000031688	RBM4	100	85.912	ENSDORG00000029108	Rbm4b	100	86.464	Dipodomys_ordii
ENSBTAG00000031688	RBM4	62	64.732	ENSETEG00000018142	-	100	65.179	Echinops_telfairi
ENSBTAG00000031688	RBM4	100	98.066	ENSEASG00005005064	RBM4	100	98.066	Equus_asinus_asinus
ENSBTAG00000031688	RBM4	100	88.950	ENSEASG00005005068	RBM4B	100	88.398	Equus_asinus_asinus
ENSBTAG00000031688	RBM4	100	98.066	ENSECAG00000022940	RBM4	100	98.066	Equus_caballus
ENSBTAG00000031688	RBM4	100	88.674	ENSECAG00000022987	RBM4B	100	88.122	Equus_caballus
ENSBTAG00000031688	RBM4	100	87.705	ENSEEUG00000000058	RBM4B	100	86.849	Erinaceus_europaeus
ENSBTAG00000031688	RBM4	100	88.674	ENSFCAG00000007394	RBM4B	97	97.842	Felis_catus
ENSBTAG00000031688	RBM4	100	97.534	ENSFCAG00000029651	RBM4	100	97.534	Felis_catus
ENSBTAG00000031688	RBM4	100	70.000	ENSFALG00000002073	-	100	69.106	Ficedula_albicollis
ENSBTAG00000031688	RBM4	100	88.674	ENSFDAG00000015530	RBM4B	100	88.122	Fukomys_damarensis
ENSBTAG00000031688	RBM4	100	96.986	ENSFDAG00000005447	RBM4	100	96.986	Fukomys_damarensis
ENSBTAG00000031688	RBM4	100	77.867	ENSGALG00000037946	-	100	76.471	Gallus_gallus
ENSBTAG00000031688	RBM4	100	76.440	ENSGAGG00000008553	-	100	75.591	Gopherus_agassizii
ENSBTAG00000031688	RBM4	100	88.674	ENSGGOG00000011698	RBM4B	97	97.842	Gorilla_gorilla
ENSBTAG00000031688	RBM4	100	96.986	ENSHGLG00000009991	RBM4	100	96.986	Heterocephalus_glaber_female
ENSBTAG00000031688	RBM4	79	56.156	ENSHGLG00000000117	-	95	66.298	Heterocephalus_glaber_female
ENSBTAG00000031688	RBM4	100	88.950	ENSHGLG00000016412	-	100	88.398	Heterocephalus_glaber_female
ENSBTAG00000031688	RBM4	100	74.309	ENSHGLG00000002853	-	100	74.309	Heterocephalus_glaber_female
ENSBTAG00000031688	RBM4	100	84.807	ENSHGLG00100003854	RBM4	97	99.275	Heterocephalus_glaber_male
ENSBTAG00000031688	RBM4	96	75.434	ENSHGLG00100020033	-	100	75.434	Heterocephalus_glaber_male
ENSBTAG00000031688	RBM4	100	88.154	ENSHGLG00100003978	-	100	87.603	Heterocephalus_glaber_male
ENSBTAG00000031688	RBM4	100	88.950	ENSSTOG00000011226	RBM4B	100	88.398	Ictidomys_tridecemlineatus
ENSBTAG00000031688	RBM4	100	97.260	ENSSTOG00000022811	RBM4	100	97.260	Ictidomys_tridecemlineatus
ENSBTAG00000031688	RBM4	100	85.359	ENSJJAG00000020870	Rbm4b	100	85.083	Jaculus_jaculus
ENSBTAG00000031688	RBM4	100	94.247	ENSLAFG00000028147	-	100	93.699	Loxodonta_africana
ENSBTAG00000031688	RBM4	100	84.254	ENSLAFG00000002285	RBM4B	100	85.083	Loxodonta_africana
ENSBTAG00000031688	RBM4	100	88.674	ENSMFAG00000033927	RBM4B	97	98.551	Macaca_fascicularis
ENSBTAG00000031688	RBM4	100	88.674	ENSMNEG00000043371	RBM4B	97	97.842	Macaca_nemestrina
ENSBTAG00000031688	RBM4	100	88.674	ENSMLEG00000028563	RBM4B	97	98.551	Mandrillus_leucophaeus
ENSBTAG00000031688	RBM4	100	85.359	ENSMAUG00000017027	Rbm4b	100	85.635	Mesocricetus_auratus
ENSBTAG00000031688	RBM4	100	88.950	ENSMICG00000003820	RBM4B	97	97.842	Microcebus_murinus
ENSBTAG00000031688	RBM4	100	85.359	ENSMOCG00000001835	Rbm4b	100	85.912	Microtus_ochrogaster
ENSBTAG00000031688	RBM4	100	89.946	ENSMODG00000008056	-	100	89.674	Monodelphis_domestica
ENSBTAG00000031688	RBM4	99	67.857	MGP_CAROLIEiJ_G0022514	-	100	68.407	Mus_caroli
ENSBTAG00000031688	RBM4	100	86.464	MGP_CAROLIEiJ_G0022515	Rbm4b	100	86.740	Mus_caroli
ENSBTAG00000031688	RBM4	100	92.562	MGP_CAROLIEiJ_G0022516	-	97	98.551	Mus_caroli
ENSBTAG00000031688	RBM4	100	92.562	ENSMUSG00000094936	Rbm4	100	98.837	Mus_musculus
ENSBTAG00000031688	RBM4	100	92.562	ENSMUSG00000096370	Gm21992	100	93.113	Mus_musculus
ENSBTAG00000031688	RBM4	100	85.912	ENSMUSG00000033760	Rbm4b	91	97.842	Mus_musculus
ENSBTAG00000031688	RBM4	100	93.113	MGP_PahariEiJ_G0014011	-	100	93.388	Mus_pahari
ENSBTAG00000031688	RBM4	100	85.635	MGP_PahariEiJ_G0014012	Rbm4b	100	86.188	Mus_pahari
ENSBTAG00000031688	RBM4	100	93.113	MGP_PahariEiJ_G0014013	-	97	98.551	Mus_pahari
ENSBTAG00000031688	RBM4	100	75.088	MGP_SPRETEiJ_G0023429	-	100	75.789	Mus_spretus
ENSBTAG00000031688	RBM4	100	75.692	MGP_SPRETEiJ_G0023428	-	94	76.308	Mus_spretus
ENSBTAG00000031688	RBM4	100	75.692	MGP_SPRETEiJ_G0023430	-	100	76.308	Mus_spretus
ENSBTAG00000031688	RBM4	100	97.808	ENSMPUG00000003443	RBM4	100	97.808	Mustela_putorius_furo
ENSBTAG00000031688	RBM4	100	89.227	ENSMPUG00000003450	RBM4B	100	88.950	Mustela_putorius_furo
ENSBTAG00000031688	RBM4	100	87.017	ENSMLUG00000001290	RBM4B	100	86.464	Myotis_lucifugus
ENSBTAG00000031688	RBM4	99	95.580	ENSMLUG00000004076	RBM4	95	95.028	Myotis_lucifugus
ENSBTAG00000031688	RBM4	100	87.052	ENSNGAG00000016292	Rbm4b	100	86.740	Nannospalax_galili
ENSBTAG00000031688	RBM4	100	88.122	ENSNLEG00000006213	RBM4B	97	97.842	Nomascus_leucogenys
ENSBTAG00000031688	RBM4	100	97.253	ENSNLEG00000035021	RBM4	100	97.253	Nomascus_leucogenys
ENSBTAG00000031688	RBM4	100	88.187	ENSMEUG00000001445	-	100	88.462	Notamacropus_eugenii
ENSBTAG00000031688	RBM4	62	84.581	ENSMEUG00000005739	-	100	83.700	Notamacropus_eugenii
ENSBTAG00000031688	RBM4	100	89.227	ENSOPRG00000009158	RBM4B	100	88.674	Ochotona_princeps
ENSBTAG00000031688	RBM4	100	96.712	ENSOPRG00000009149	RBM4	100	96.712	Ochotona_princeps
ENSBTAG00000031688	RBM4	100	88.950	ENSODEG00000017696	-	100	88.398	Octodon_degus
ENSBTAG00000031688	RBM4	100	79.282	ENSODEG00000001866	-	100	79.558	Octodon_degus
ENSBTAG00000031688	RBM4	100	86.188	ENSOANG00000011036	-	100	85.083	Ornithorhynchus_anatinus
ENSBTAG00000031688	RBM4	100	79.558	ENSOANG00000003143	-	84	79.282	Ornithorhynchus_anatinus
ENSBTAG00000031688	RBM4	100	97.260	ENSOCUG00000004731	RBM4	100	97.260	Oryctolagus_cuniculus
ENSBTAG00000031688	RBM4	100	88.950	ENSOCUG00000006695	LARK	100	88.398	Oryctolagus_cuniculus
ENSBTAG00000031688	RBM4	100	88.950	ENSOGAG00000015648	RBM4B	100	88.398	Otolemur_garnettii
ENSBTAG00000031688	RBM4	100	96.712	ENSOGAG00000015647	RBM4	100	96.712	Otolemur_garnettii
ENSBTAG00000031688	RBM4	100	88.736	ENSOARG00000007759	RBM4B	100	88.736	Ovis_aries
ENSBTAG00000031688	RBM4	100	96.961	ENSOARG00000007700	RBM4	100	96.961	Ovis_aries
ENSBTAG00000031688	RBM4	100	88.674	ENSPPAG00000015125	RBM4B	97	97.842	Pan_paniscus
ENSBTAG00000031688	RBM4	100	88.398	ENSPPRG00000003388	RBM4B	97	97.842	Panthera_pardus
ENSBTAG00000031688	RBM4	100	97.534	ENSPPRG00000003533	RBM4	100	97.534	Panthera_pardus
ENSBTAG00000031688	RBM4	100	83.702	ENSPTIG00000016180	RBM4	97	99.275	Panthera_tigris_altaica
ENSBTAG00000031688	RBM4	100	88.398	ENSPTIG00000015426	RBM4B	97	97.842	Panthera_tigris_altaica
ENSBTAG00000031688	RBM4	100	88.674	ENSPTRG00000003935	RBM4B	97	97.842	Pan_troglodytes
ENSBTAG00000031688	RBM4	100	88.674	ENSPANG00000020672	RBM4B	97	97.842	Papio_anubis
ENSBTAG00000031688	RBM4	100	76.203	ENSPSIG00000003430	-	100	75.335	Pelodiscus_sinensis
ENSBTAG00000031688	RBM4	77	78.547	ENSPSIG00000003477	-	95	78.082	Pelodiscus_sinensis
ENSBTAG00000031688	RBM4	100	86.188	ENSPEMG00000009144	Rbm4b	100	86.464	Peromyscus_maniculatus_bairdii
ENSBTAG00000031688	RBM4	100	96.154	ENSPPYG00000003012	RBM4	100	96.154	Pongo_abelii
ENSBTAG00000031688	RBM4	100	88.674	ENSPPYG00000003010	RBM4B	100	88.122	Pongo_abelii
ENSBTAG00000031688	RBM4	100	95.342	ENSPCAG00000003393	-	100	94.795	Procavia_capensis
ENSBTAG00000031688	RBM4	100	88.950	ENSPCOG00000027885	RBM4B	97	97.842	Propithecus_coquereli
ENSBTAG00000031688	RBM4	100	89.227	ENSPVAG00000010487	RBM4B	100	88.674	Pteropus_vampyrus
ENSBTAG00000031688	RBM4	100	97.808	ENSPVAG00000010486	RBM4	100	97.808	Pteropus_vampyrus
ENSBTAG00000031688	RBM4	100	86.464	ENSRNOG00000061795	Rbm4b	100	87.017	Rattus_norvegicus
ENSBTAG00000031688	RBM4	100	93.699	ENSRNOG00000050741	Rbm4	97	98.551	Rattus_norvegicus
ENSBTAG00000031688	RBM4	100	88.674	ENSRBIG00000019394	RBM4B	97	97.842	Rhinopithecus_bieti
ENSBTAG00000031688	RBM4	100	88.674	ENSRROG00000032850	RBM4B	97	97.842	Rhinopithecus_roxellana
ENSBTAG00000031688	RBM4	100	88.122	ENSSBOG00000034474	RBM4B	97	97.122	Saimiri_boliviensis_boliviensis
ENSBTAG00000031688	RBM4	100	87.017	ENSSHAG00000008386	-	100	86.740	Sarcophilus_harrisii
ENSBTAG00000031688	RBM4	100	88.674	ENSSARG00000010710	RBM4B	100	88.122	Sorex_araneus
ENSBTAG00000031688	RBM4	100	97.534	ENSSSCG00000032437	RBM4	100	97.534	Sus_scrofa
ENSBTAG00000031688	RBM4	78	79.522	ENSTGUG00000016779	-	100	77.850	Taeniopygia_guttata
ENSBTAG00000031688	RBM4	100	87.017	ENSTBEG00000003748	RBM4B	100	86.740	Tupaia_belangeri
ENSBTAG00000031688	RBM4	64	98.636	ENSTBEG00000003727	-	70	98.636	Tupaia_belangeri
ENSBTAG00000031688	RBM4	100	88.950	ENSTTRG00000011166	RBM4B	100	88.398	Tursiops_truncatus
ENSBTAG00000031688	RBM4	100	96.438	ENSTTRG00000011164	RBM4	100	95.890	Tursiops_truncatus
ENSBTAG00000031688	RBM4	100	97.534	ENSUAMG00000014882	RBM4	100	97.534	Ursus_americanus
ENSBTAG00000031688	RBM4	100	89.227	ENSUAMG00000004745	RBM4B	100	88.950	Ursus_americanus
ENSBTAG00000031688	RBM4	65	98.723	ENSUMAG00000011738	-	97	99.275	Ursus_maritimus
ENSBTAG00000031688	RBM4	100	88.950	ENSVPAG00000001950	RBM4B	100	88.398	Vicugna_pacos
ENSBTAG00000031688	RBM4	100	94.795	ENSVPAG00000001949	RBM4	100	93.425	Vicugna_pacos
ENSBTAG00000031688	RBM4	100	96.986	ENSVVUG00000010622	RBM4	100	96.986	Vulpes_vulpes
ENSBTAG00000031688	RBM4	100	88.674	ENSVVUG00000010619	RBM4B	100	88.398	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISS	Process
GO:0002190	cap-independent translational initiation	-	ISS	Process
GO:0002192	IRES-dependent translational initiation of linear mRNA	-	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0003729	mRNA binding	-	ISS	Function
GO:0003730	mRNA 3'-UTR binding	-	ISS	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005829	cytosol	-	IEA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010494	cytoplasmic stress granule	-	ISS	Component
GO:0016607	nuclear speck	-	ISS	Component
GO:0017148	negative regulation of translation	-	ISS	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0030332	cyclin binding	-	IEA	Function
GO:0032055	negative regulation of translation in response to stress	-	ISS	Process
GO:0035198	miRNA binding	-	ISS	Function
GO:0035278	miRNA mediated inhibition of translation	-	ISS	Process
GO:0036002	pre-mRNA binding	-	ISS	Function
GO:0043153	entrainment of circadian clock by photoperiod	-	ISS	Process
GO:0045947	negative regulation of translational initiation	-	ISS	Process
GO:0046685	response to arsenic-containing substance	-	ISS	Process
GO:0046822	regulation of nucleocytoplasmic transport	-	ISS	Process
GO:0051149	positive regulation of muscle cell differentiation	-	ISS	Process
GO:0097157	pre-mRNA intronic binding	-	ISS	Function
GO:0097158	pre-mRNA intronic pyrimidine-rich binding	-	ISS	Function
GO:0097167	circadian regulation of translation	-	ISS	Process