EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000035615 (Gene tree)
Gene ID: 616181
Gene Symbol: UPF3B
Alias: -
Full Name: Bos taurus UPF3B%2C regulator of nonsense mediated mRNA decay (UPF3B)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 16321 bases
Position: chrX:4167949-4184269
Accession: NM_001076411
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000027792	Smg4_UPF3	PF03467.15	2.1e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000027792	-	1115	-	ENSBTAP00000027792	307 (aa)	-	Q2T9M5

Gene Model

Click here to download ENSBTAG00000035615's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000035615's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000035615	UPF3B	52	67.702	ENSBTAG00000047365	-	72	67.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000035615	UPF3B	100	98.141	ENSG00000125351	UPF3B	96	98.077	Homo_sapiens
ENSBTAG00000035615	UPF3B	68	68.720	ENSAPOG00000012775	upf3b	56	68.613	Acanthochromis_polyacanthus
ENSBTAG00000035615	UPF3B	100	99.628	ENSAMEG00000000163	UPF3B	69	99.628	Ailuropoda_melanoleuca
ENSBTAG00000035615	UPF3B	58	67.797	ENSACIG00000020468	upf3a	83	66.129	Amphilophus_citrinellus
ENSBTAG00000035615	UPF3B	88	60.073	ENSACIG00000013582	upf3b	55	61.818	Amphilophus_citrinellus
ENSBTAG00000035615	UPF3B	88	66.912	ENSAOCG00000000706	upf3b	56	67.153	Amphiprion_ocellaris
ENSBTAG00000035615	UPF3B	68	68.720	ENSAPEG00000005545	upf3b	56	68.613	Amphiprion_percula
ENSBTAG00000035615	UPF3B	68	69.194	ENSATEG00000018742	upf3b	55	69.118	Anabas_testudineus
ENSBTAG00000035615	UPF3B	86	84.416	ENSACAG00000003625	UPF3B	67	76.277	Anolis_carolinensis
ENSBTAG00000035615	UPF3B	93	71.777	ENSANAG00000033169	-	100	71.080	Aotus_nancymaae
ENSBTAG00000035615	UPF3B	100	88.848	ENSANAG00000025598	-	96	82.201	Aotus_nancymaae
ENSBTAG00000035615	UPF3B	100	97.770	ENSANAG00000021894	-	97	97.596	Aotus_nancymaae
ENSBTAG00000035615	UPF3B	88	67.279	ENSACLG00000001649	upf3b	56	68.015	Astatotilapia_calliptera
ENSBTAG00000035615	UPF3B	99	61.688	ENSAMXG00000000199	upf3b	97	59.740	Astyanax_mexicanus
ENSBTAG00000035615	UPF3B	62	31.633	WBGene00004882	smg-4	50	31.098	Caenorhabditis_elegans
ENSBTAG00000035615	UPF3B	100	98.141	ENSCJAG00000004975	UPF3B	97	98.077	Callithrix_jacchus
ENSBTAG00000035615	UPF3B	100	98.885	ENSCAFG00000018426	UPF3B	71	98.885	Canis_familiaris
ENSBTAG00000035615	UPF3B	100	94.796	ENSCAFG00020004074	UPF3B	70	97.436	Canis_lupus_dingo
ENSBTAG00000035615	UPF3B	100	99.628	ENSCHIG00000018011	-	100	99.023	Capra_hircus
ENSBTAG00000035615	UPF3B	85	68.750	ENSCHIG00000011454	-	58	68.421	Capra_hircus
ENSBTAG00000035615	UPF3B	100	100.000	ENSCHIG00000000247	-	67	100.000	Capra_hircus
ENSBTAG00000035615	UPF3B	100	98.141	ENSTSYG00000014690	UPF3B	97	92.994	Carlito_syrichta
ENSBTAG00000035615	UPF3B	100	68.471	ENSCCAG00000021964	-	96	68.471	Cebus_capucinus
ENSBTAG00000035615	UPF3B	99	67.320	ENSCCAG00000029813	-	97	67.869	Cebus_capucinus
ENSBTAG00000035615	UPF3B	100	98.141	ENSCATG00000017506	UPF3B	97	98.077	Cercocebus_atys
ENSBTAG00000035615	UPF3B	100	95.911	ENSCLAG00000003260	UPF3B	69	95.911	Chinchilla_lanigera
ENSBTAG00000035615	UPF3B	100	98.141	ENSCSAG00000018348	UPF3B	67	98.141	Chlorocebus_sabaeus
ENSBTAG00000035615	UPF3B	99	68.382	ENSCPBG00000020685	UPF3B	61	78.355	Chrysemys_picta_bellii
ENSBTAG00000035615	UPF3B	59	46.667	ENSCING00000008396	-	91	51.370	Ciona_intestinalis
ENSBTAG00000035615	UPF3B	100	97.068	ENSCANG00000029220	UPF3B	97	97.068	Colobus_angolensis_palliatus
ENSBTAG00000035615	UPF3B	88	84.015	ENSCGRG00001013643	-	73	80.669	Cricetulus_griseus_chok1gshd
ENSBTAG00000035615	UPF3B	100	89.219	ENSCGRG00001006858	-	69	89.219	Cricetulus_griseus_chok1gshd
ENSBTAG00000035615	UPF3B	83	94.009	ENSCGRG00000007627	Upf3b	65	94.009	Cricetulus_griseus_crigri
ENSBTAG00000035615	UPF3B	88	66.788	ENSCSEG00000002046	upf3b	54	66.788	Cynoglossus_semilaevis
ENSBTAG00000035615	UPF3B	68	66.029	ENSCVAG00000005030	upf3b	56	65.568	Cyprinodon_variegatus
ENSBTAG00000035615	UPF3B	88	67.153	ENSDARG00000000489	upf3b	55	67.153	Danio_rerio
ENSBTAG00000035615	UPF3B	100	97.770	ENSDNOG00000008665	UPF3B	67	97.770	Dasypus_novemcinctus
ENSBTAG00000035615	UPF3B	100	90.335	ENSDORG00000006077	Upf3b	69	90.335	Dipodomys_ordii
ENSBTAG00000035615	UPF3B	100	95.911	ENSEASG00005012919	UPF3B	69	98.230	Equus_asinus_asinus
ENSBTAG00000035615	UPF3B	100	95.911	ENSECAG00000016947	UPF3B	69	95.911	Equus_caballus
ENSBTAG00000035615	UPF3B	88	67.647	ENSELUG00000020389	upf3b	57	64.041	Esox_lucius
ENSBTAG00000035615	UPF3B	100	98.885	ENSFCAG00000004388	UPF3B	69	98.885	Felis_catus
ENSBTAG00000035615	UPF3B	99	73.944	ENSFALG00000001569	UPF3B	65	72.792	Ficedula_albicollis
ENSBTAG00000035615	UPF3B	100	97.398	ENSFDAG00000018869	UPF3B	69	97.398	Fukomys_damarensis
ENSBTAG00000035615	UPF3B	68	66.029	ENSFHEG00000017895	upf3b	56	65.201	Fundulus_heteroclitus
ENSBTAG00000035615	UPF3B	88	65.683	ENSGMOG00000001621	upf3b	54	65.314	Gadus_morhua
ENSBTAG00000035615	UPF3B	100	74.545	ENSGALG00000008618	UPF3B	67	74.545	Gallus_gallus
ENSBTAG00000035615	UPF3B	91	65.550	ENSGAFG00000000829	upf3b	57	65.455	Gambusia_affinis
ENSBTAG00000035615	UPF3B	93	67.820	ENSGACG00000017435	upf3b	100	68.512	Gasterosteus_aculeatus
ENSBTAG00000035615	UPF3B	54	69.091	ENSGAGG00000001952	UPF3A	81	74.648	Gopherus_agassizii
ENSBTAG00000035615	UPF3B	99	76.471	ENSGAGG00000001219	UPF3B	70	75.636	Gopherus_agassizii
ENSBTAG00000035615	UPF3B	100	98.141	ENSGGOG00000023995	UPF3B	97	97.068	Gorilla_gorilla
ENSBTAG00000035615	UPF3B	88	67.279	ENSHBUG00000017393	upf3b	56	68.015	Haplochromis_burtoni
ENSBTAG00000035615	UPF3B	88	87.732	ENSHGLG00000011189	-	64	87.732	Heterocephalus_glaber_female
ENSBTAG00000035615	UPF3B	100	96.283	ENSHGLG00000019582	-	69	96.283	Heterocephalus_glaber_female
ENSBTAG00000035615	UPF3B	88	87.732	ENSHGLG00100001889	-	65	87.732	Heterocephalus_glaber_male
ENSBTAG00000035615	UPF3B	100	96.283	ENSHGLG00100002042	-	71	96.283	Heterocephalus_glaber_male
ENSBTAG00000035615	UPF3B	58	67.416	ENSHCOG00000013985	upf3a	66	72.611	Hippocampus_comes
ENSBTAG00000035615	UPF3B	99	68.382	ENSHCOG00000017004	upf3b	55	68.382	Hippocampus_comes
ENSBTAG00000035615	UPF3B	90	64.621	ENSIPUG00000019249	upf3b	58	66.045	Ictalurus_punctatus
ENSBTAG00000035615	UPF3B	52	63.975	ENSSTOG00000030282	-	68	63.975	Ictidomys_tridecemlineatus
ENSBTAG00000035615	UPF3B	100	97.026	ENSSTOG00000001101	UPF3B	69	97.026	Ictidomys_tridecemlineatus
ENSBTAG00000035615	UPF3B	100	94.796	ENSJJAG00000000053	Upf3b	69	94.796	Jaculus_jaculus
ENSBTAG00000035615	UPF3B	68	66.825	ENSKMAG00000020300	upf3b	56	66.788	Kryptolebias_marmoratus
ENSBTAG00000035615	UPF3B	88	66.176	ENSLBEG00000028689	upf3b	56	66.176	Labrus_bergylta
ENSBTAG00000035615	UPF3B	77	79.747	ENSLACG00000008691	UPF3B	63	69.231	Latimeria_chalumnae
ENSBTAG00000035615	UPF3B	74	75.546	ENSLOCG00000015238	upf3b	52	75.546	Lepisosteus_oculatus
ENSBTAG00000035615	UPF3B	100	97.770	ENSLAFG00000001267	UPF3B	69	97.770	Loxodonta_africana
ENSBTAG00000035615	UPF3B	71	72.566	ENSMFAG00000045275	-	94	71.889	Macaca_fascicularis
ENSBTAG00000035615	UPF3B	100	98.141	ENSMFAG00000045414	UPF3B	97	98.077	Macaca_fascicularis
ENSBTAG00000035615	UPF3B	100	98.141	ENSMMUG00000020222	UPF3B	97	98.077	Macaca_mulatta
ENSBTAG00000035615	UPF3B	71	69.912	ENSMMUG00000046682	-	94	67.281	Macaca_mulatta
ENSBTAG00000035615	UPF3B	100	98.141	ENSMNEG00000039794	UPF3B	97	98.077	Macaca_nemestrina
ENSBTAG00000035615	UPF3B	71	72.124	ENSMNEG00000040898	-	94	71.429	Macaca_nemestrina
ENSBTAG00000035615	UPF3B	100	98.141	ENSMLEG00000010999	UPF3B	97	98.077	Mandrillus_leucophaeus
ENSBTAG00000035615	UPF3B	88	67.279	ENSMZEG00005007871	upf3b	56	68.015	Maylandia_zebra
ENSBTAG00000035615	UPF3B	72	81.522	ENSMGAG00000007728	UPF3B	59	81.522	Meleagris_gallopavo
ENSBTAG00000035615	UPF3B	100	88.848	ENSMAUG00000008705	Upf3b	69	88.848	Mesocricetus_auratus
ENSBTAG00000035615	UPF3B	100	97.727	ENSMICG00000001743	UPF3B	97	97.727	Microcebus_murinus
ENSBTAG00000035615	UPF3B	100	93.680	ENSMOCG00000017893	Upf3b	67	93.680	Microtus_ochrogaster
ENSBTAG00000035615	UPF3B	68	63.208	ENSMMOG00000004183	upf3b	61	59.868	Mola_mola
ENSBTAG00000035615	UPF3B	83	84.685	ENSMODG00000010232	UPF3B	63	84.685	Monodelphis_domestica
ENSBTAG00000035615	UPF3B	88	67.279	ENSMALG00000008042	upf3b	55	67.883	Monopterus_albus
ENSBTAG00000035615	UPF3B	100	89.963	MGP_CAROLIEiJ_G0032999	Upf3b	69	89.963	Mus_caroli
ENSBTAG00000035615	UPF3B	100	90.335	ENSMUSG00000036572	Upf3b	69	90.335	Mus_musculus
ENSBTAG00000035615	UPF3B	100	89.963	MGP_PahariEiJ_G0031543	Upf3b	69	89.963	Mus_pahari
ENSBTAG00000035615	UPF3B	100	90.335	MGP_SPRETEiJ_G0034152	Upf3b	69	90.335	Mus_spretus
ENSBTAG00000035615	UPF3B	100	99.628	ENSMPUG00000001531	UPF3B	71	99.628	Mustela_putorius_furo
ENSBTAG00000035615	UPF3B	100	98.141	ENSMLUG00000010821	UPF3B	69	98.141	Myotis_lucifugus
ENSBTAG00000035615	UPF3B	100	89.963	ENSNGAG00000008231	Upf3b	69	89.963	Nannospalax_galili
ENSBTAG00000035615	UPF3B	67	62.621	ENSNBRG00000011560	upf3b	95	65.605	Neolamprologus_brichardi
ENSBTAG00000035615	UPF3B	71	75.576	ENSNLEG00000027516	-	94	75.000	Nomascus_leucogenys
ENSBTAG00000035615	UPF3B	100	97.770	ENSNLEG00000014897	UPF3B	79	97.297	Nomascus_leucogenys
ENSBTAG00000035615	UPF3B	73	79.386	ENSODEG00000007164	-	90	79.147	Octodon_degus
ENSBTAG00000035615	UPF3B	55	62.722	ENSODEG00000009176	-	63	65.823	Octodon_degus
ENSBTAG00000035615	UPF3B	100	97.026	ENSODEG00000002186	-	72	97.026	Octodon_degus
ENSBTAG00000035615	UPF3B	71	72.811	ENSODEG00000006064	-	94	72.596	Octodon_degus
ENSBTAG00000035615	UPF3B	71	68.807	ENSODEG00000000596	-	95	68.421	Octodon_degus
ENSBTAG00000035615	UPF3B	88	69.118	ENSONIG00000002536	upf3b	55	69.853	Oreochromis_niloticus
ENSBTAG00000035615	UPF3B	83	76.344	ENSOANG00000002594	-	50	85.350	Ornithorhynchus_anatinus
ENSBTAG00000035615	UPF3B	100	96.654	ENSOCUG00000010213	UPF3B	67	96.654	Oryctolagus_cuniculus
ENSBTAG00000035615	UPF3B	88	64.964	ENSORLG00000001026	upf3b	56	64.964	Oryzias_latipes
ENSBTAG00000035615	UPF3B	93	58.503	ENSORLG00020003758	upf3b	91	58.503	Oryzias_latipes_hni
ENSBTAG00000035615	UPF3B	88	64.599	ENSORLG00015012954	upf3b	56	64.599	Oryzias_latipes_hsok
ENSBTAG00000035615	UPF3B	52	73.585	ENSOMEG00000014736	upf3b	56	64.964	Oryzias_melastigma
ENSBTAG00000035615	UPF3B	100	96.654	ENSOGAG00000004643	-	69	96.654	Otolemur_garnettii
ENSBTAG00000035615	UPF3B	99	84.444	ENSOGAG00000033003	-	67	84.444	Otolemur_garnettii
ENSBTAG00000035615	UPF3B	85	76.923	ENSOARG00000007869	-	67	76.923	Ovis_aries
ENSBTAG00000035615	UPF3B	100	98.897	ENSOARG00000016051	-	67	98.897	Ovis_aries
ENSBTAG00000035615	UPF3B	100	98.141	ENSPPAG00000040390	UPF3B	97	97.068	Pan_paniscus
ENSBTAG00000035615	UPF3B	100	98.885	ENSPPRG00000023536	UPF3B	69	98.885	Panthera_pardus
ENSBTAG00000035615	UPF3B	100	98.885	ENSPTIG00000015264	UPF3B	97	97.394	Panthera_tigris_altaica
ENSBTAG00000035615	UPF3B	100	98.141	ENSPTRG00000022228	UPF3B	97	97.068	Pan_troglodytes
ENSBTAG00000035615	UPF3B	70	72.000	ENSPANG00000029350	-	93	70.370	Papio_anubis
ENSBTAG00000035615	UPF3B	100	98.141	ENSPANG00000000900	UPF3B	97	98.077	Papio_anubis
ENSBTAG00000035615	UPF3B	88	67.153	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSBTAG00000035615	UPF3B	58	83.799	ENSPSIG00000005833	UPF3B	63	83.799	Pelodiscus_sinensis
ENSBTAG00000035615	UPF3B	88	67.153	ENSPMGG00000016067	upf3b	94	67.391	Periophthalmus_magnuspinnatus
ENSBTAG00000035615	UPF3B	100	92.937	ENSPEMG00000012352	Upf3b	69	92.937	Peromyscus_maniculatus_bairdii
ENSBTAG00000035615	UPF3B	94	47.147	ENSPCIG00000019590	-	66	71.333	Phascolarctos_cinereus
ENSBTAG00000035615	UPF3B	92	75.100	ENSPCIG00000028914	UPF3B	58	75.319	Phascolarctos_cinereus
ENSBTAG00000035615	UPF3B	91	66.986	ENSPLAG00000005105	upf3b	59	65.371	Poecilia_latipinna
ENSBTAG00000035615	UPF3B	91	66.507	ENSPLAG00000019922	upf3b	57	66.545	Poecilia_latipinna
ENSBTAG00000035615	UPF3B	56	68.750	ENSPLAG00000011960	upf3a	54	77.419	Poecilia_latipinna
ENSBTAG00000035615	UPF3B	91	66.507	ENSPMEG00000023532	upf3b	57	66.545	Poecilia_mexicana
ENSBTAG00000035615	UPF3B	50	66.242	ENSPREG00000012214	upf3b	95	65.000	Poecilia_reticulata
ENSBTAG00000035615	UPF3B	100	92.812	ENSPPYG00000020675	-	97	92.812	Pongo_abelii
ENSBTAG00000035615	UPF3B	100	96.654	ENSPCAG00000009464	UPF3B	67	96.654	Procavia_capensis
ENSBTAG00000035615	UPF3B	100	98.148	ENSPCOG00000021960	UPF3B	97	97.403	Propithecus_coquereli
ENSBTAG00000035615	UPF3B	100	86.842	ENSPVAG00000014075	UPF3B	64	86.842	Pteropus_vampyrus
ENSBTAG00000035615	UPF3B	88	67.279	ENSPNYG00000009846	upf3b	56	68.015	Pundamilia_nyererei
ENSBTAG00000035615	UPF3B	93	67.586	ENSPNAG00000021528	upf3b	96	64.821	Pygocentrus_nattereri
ENSBTAG00000035615	UPF3B	100	90.706	ENSRNOG00000039994	Upf3b	69	90.706	Rattus_norvegicus
ENSBTAG00000035615	UPF3B	72	98.361	ENSRBIG00000037219	UPF3B	62	98.361	Rhinopithecus_bieti
ENSBTAG00000035615	UPF3B	100	98.141	ENSRROG00000041031	UPF3B	97	98.077	Rhinopithecus_roxellana
ENSBTAG00000035615	UPF3B	100	97.398	ENSSBOG00000019740	UPF3B	99	96.635	Saimiri_boliviensis_boliviensis
ENSBTAG00000035615	UPF3B	83	84.685	ENSSHAG00000008634	UPF3B	55	84.685	Sarcophilus_harrisii
ENSBTAG00000035615	UPF3B	88	69.485	ENSSFOG00015005614	upf3b	57	68.382	Scleropages_formosus
ENSBTAG00000035615	UPF3B	52	70.000	ENSSMAG00000003858	upf3a	78	67.241	Scophthalmus_maximus
ENSBTAG00000035615	UPF3B	93	69.338	ENSSMAG00000012913	upf3b	89	69.550	Scophthalmus_maximus
ENSBTAG00000035615	UPF3B	68	66.351	ENSSDUG00000005682	upf3b	56	66.788	Seriola_dumerili
ENSBTAG00000035615	UPF3B	53	70.732	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSBTAG00000035615	UPF3B	68	66.825	ENSSLDG00000003130	upf3b	56	67.153	Seriola_lalandi_dorsalis
ENSBTAG00000035615	UPF3B	83	95.567	ENSSARG00000004147	UPF3B	63	93.548	Sorex_araneus
ENSBTAG00000035615	UPF3B	100	73.913	ENSSPUG00000013082	UPF3B	69	71.014	Sphenodon_punctatus
ENSBTAG00000035615	UPF3B	53	70.732	ENSSPAG00000007938	upf3a	72	70.701	Stegastes_partitus
ENSBTAG00000035615	UPF3B	88	68.015	ENSSPAG00000009989	upf3b	56	68.382	Stegastes_partitus
ENSBTAG00000035615	UPF3B	100	99.628	ENSSSCG00000012617	UPF3B	69	99.628	Sus_scrofa
ENSBTAG00000035615	UPF3B	84	82.511	ENSTGUG00000003413	UPF3B	63	82.511	Taeniopygia_guttata
ENSBTAG00000035615	UPF3B	53	74.691	ENSTRUG00000010645	upf3b	56	65.314	Takifugu_rubripes
ENSBTAG00000035615	UPF3B	100	84.015	ENSTBEG00000003229	UPF3B	67	84.015	Tupaia_belangeri
ENSBTAG00000035615	UPF3B	100	94.796	ENSUAMG00000024565	UPF3B	69	94.796	Ursus_americanus
ENSBTAG00000035615	UPF3B	89	85.115	ENSUMAG00000002150	UPF3B	68	85.115	Ursus_maritimus
ENSBTAG00000035615	UPF3B	76	100.000	ENSVPAG00000009971	UPF3B	61	100.000	Vicugna_pacos
ENSBTAG00000035615	UPF3B	100	94.424	ENSVVUG00000011594	UPF3B	97	98.077	Vulpes_vulpes
ENSBTAG00000035615	UPF3B	82	80.368	ENSXETG00000007440	upf3b	74	79.532	Xenopus_tropicalis
ENSBTAG00000035615	UPF3B	91	65.550	ENSXCOG00000016586	upf3b	97	66.197	Xiphophorus_couchianus
ENSBTAG00000035615	UPF3B	87	65.072	ENSXMAG00000013680	upf3b	57	65.455	Xiphophorus_maculatus