EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSBTAG00000037493 (Gene tree)
Gene ID
512824
Gene Symbol
PUF60
Alias
-
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Bos_taurus
Status
putative
Strand
Plus strand
Length
13466 bases
Position
chr14:972914-986379
Accession
53878
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSBTAP00000057845RRM_1PF00076.221.2e-4312
ENSBTAP00000057845RRM_1PF00076.221.2e-4322
ENSBTAP00000002882RRM_1PF00076.221.2e-4312
ENSBTAP00000002882RRM_1PF00076.221.2e-4322
ENSBTAP00000059475RRM_1PF00076.221.2e-4312
ENSBTAP00000059475RRM_1PF00076.221.2e-4322
ENSBTAP00000061124RRM_1PF00076.221.4e-4312
ENSBTAP00000061124RRM_1PF00076.221.4e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSBTAT00000083417-3066-ENSBTAP00000061124562 (aa)-UPI00005BE12E
ENSBTAT00000077344-3015-ENSBTAP00000057845545 (aa)-UPI00005BE135
ENSBTAT00000002882-1578-ENSBTAP00000002882525 (aa)-F1N238
ENSBTAT00000073909-2970-ENSBTAP00000059475530 (aa)-UPI00005BE131
Gene Model
Click here to download ENSBTAG00000037493's gene model file
Pathways
Pathway IDPathway NameSource
bta03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000037493's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSBTAG00000037493PUF606236.275ENSBTAG00000002830U2AF26338.235
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSBTAG00000037493PUF6010099.245ENSG00000179950PUF6010099.245Homo_sapiens
ENSBTAG00000037493PUF609985.389ENSAPOG00000001713puf60b9985.417Acanthochromis_polyacanthus
ENSBTAG00000037493PUF609997.510ENSAMEG00000006406PUF609996.435Ailuropoda_melanoleuca
ENSBTAG00000037493PUF609877.159ENSACIG00000003263-9977.586Amphilophus_citrinellus
ENSBTAG00000037493PUF609885.605ENSACIG00000021705puf60b10085.605Amphilophus_citrinellus
ENSBTAG00000037493PUF609985.389ENSAOCG00000005395puf60b10086.180Amphiprion_ocellaris
ENSBTAG00000037493PUF6010080.899ENSAOCG00000015558-10081.461Amphiprion_ocellaris
ENSBTAG00000037493PUF609872.745ENSAPEG00000001836-9976.667Amphiprion_percula
ENSBTAG00000037493PUF609979.773ENSAPEG00000011923puf60b9982.583Amphiprion_percula
ENSBTAG00000037493PUF609980.952ENSATEG00000006303-9981.333Anabas_testudineus
ENSBTAG00000037493PUF609985.444ENSATEG00000001730puf60b9985.606Anabas_testudineus
ENSBTAG00000037493PUF609998.276ENSAPLG00000010150PUF6010098.276Anas_platyrhynchos
ENSBTAG00000037493PUF609996.374ENSACAG00000001645PUF609896.023Anolis_carolinensis
ENSBTAG00000037493PUF6010099.245ENSANAG00000018626PUF6010099.245Aotus_nancymaae
ENSBTAG00000037493PUF609885.605ENSACLG00000004462puf60b10085.605Astatotilapia_calliptera
ENSBTAG00000037493PUF609984.112ENSAMXG00000036570puf60a9784.736Astyanax_mexicanus
ENSBTAG00000037493PUF609876.636ENSAMXG00000041030puf60b10074.906Astyanax_mexicanus
ENSBTAG00000037493PUF607950.667WBGene00004389rnp-68353.497Caenorhabditis_elegans
ENSBTAG00000037493PUF6010099.434ENSCJAG00000021485PUF6010099.434Callithrix_jacchus
ENSBTAG00000037493PUF6010099.266ENSCAFG00000001400PUF6010099.266Canis_familiaris
ENSBTAG00000037493PUF6010099.623ENSCAFG00020018754PUF6010099.623Canis_lupus_dingo
ENSBTAG00000037493PUF6099100.000ENSCHIG00000001618PUF609299.278Capra_hircus
ENSBTAG00000037493PUF6010099.434ENSTSYG00000011912PUF6010099.612Carlito_syrichta
ENSBTAG00000037493PUF609993.916ENSCPOG00000014613PUF609993.393Cavia_porcellus
ENSBTAG00000037493PUF6010099.245ENSCCAG00000007744PUF6010099.245Cebus_capucinus
ENSBTAG00000037493PUF6010099.245ENSCATG00000035405PUF6010099.245Cercocebus_atys
ENSBTAG00000037493PUF6010099.291ENSCLAG00000009154PUF6010099.291Chinchilla_lanigera
ENSBTAG00000037493PUF609899.225ENSCSAG00000008878PUF6010099.225Chlorocebus_sabaeus
ENSBTAG00000037493PUF609998.276ENSCPBG00000005595PUF609997.917Chrysemys_picta_bellii
ENSBTAG00000037493PUF6010047.993ENSCING00000008436-9948.059Ciona_intestinalis
ENSBTAG00000037493PUF606359.882ENSCING00000002156-8763.043Ciona_intestinalis
ENSBTAG00000037493PUF609655.556ENSCSAVG00000001385-9955.192Ciona_savignyi
ENSBTAG00000037493PUF609649.703ENSCSAVG00000004765-9750.412Ciona_savignyi
ENSBTAG00000037493PUF608098.630ENSCANG00000041843PUF6010099.281Colobus_angolensis_palliatus
ENSBTAG00000037493PUF6010098.582ENSCGRG00001017442Puf6010098.582Cricetulus_griseus_chok1gshd
ENSBTAG00000037493PUF609998.851ENSCGRG00000003717Puf609997.662Cricetulus_griseus_crigri
ENSBTAG00000037493PUF609985.009ENSCSEG00000019887puf60b9384.820Cynoglossus_semilaevis
ENSBTAG00000037493PUF609872.275ENSCSEG00000014845-8977.075Cynoglossus_semilaevis
ENSBTAG00000037493PUF609884.837ENSCVAG00000009386puf60b10085.988Cyprinodon_variegatus
ENSBTAG00000037493PUF609080.000ENSCVAG00000001560-9879.747Cyprinodon_variegatus
ENSBTAG00000037493PUF609879.135ENSDARG00000001241puf60b9996.825Danio_rerio
ENSBTAG00000037493PUF609886.742ENSDARG00000032175puf60a9993.617Danio_rerio
ENSBTAG00000037493PUF609784.221ENSDNOG00000043278PUF609881.541Dasypus_novemcinctus
ENSBTAG00000037493PUF609999.425ENSDORG00000004585Puf6010098.917Dipodomys_ordii
ENSBTAG00000037493PUF609648.969FBgn0028577hfp8658.580Drosophila_melanogaster
ENSBTAG00000037493PUF609670.040ENSEBUG00000005470-8872.222Eptatretus_burgeri
ENSBTAG00000037493PUF609960.672ENSEBUG00000014291puf60b8565.739Eptatretus_burgeri
ENSBTAG00000037493PUF6010099.623ENSEASG00005009695PUF6010099.623Equus_asinus_asinus
ENSBTAG00000037493PUF609999.617ENSECAG00000024681PUF609999.458Equus_caballus
ENSBTAG00000037493PUF6010084.387ENSELUG00000018443-9985.602Esox_lucius
ENSBTAG00000037493PUF609983.650ENSELUG00000006507puf60b10079.643Esox_lucius
ENSBTAG00000037493PUF6010099.434ENSFCAG00000001045PUF6010099.434Felis_catus
ENSBTAG00000037493PUF6010085.333ENSFALG00000001136PUF609986.857Ficedula_albicollis
ENSBTAG00000037493PUF6010098.936ENSFDAG00000017177PUF6010098.936Fukomys_damarensis
ENSBTAG00000037493PUF6010083.738ENSFHEG00000020046puf60b10086.372Fundulus_heteroclitus
ENSBTAG00000037493PUF609479.317ENSFHEG00000021687PUF6010080.164Fundulus_heteroclitus
ENSBTAG00000037493PUF609971.992ENSGMOG00000006392puf60b10071.241Gadus_morhua
ENSBTAG00000037493PUF606698.256ENSGALG00000039901PUF609498.256Gallus_gallus
ENSBTAG00000037493PUF6010082.991ENSGAFG00000021040puf60b10085.797Gambusia_affinis
ENSBTAG00000037493PUF609879.537ENSGAFG00000004334-9979.042Gambusia_affinis
ENSBTAG00000037493PUF6010073.557ENSGACG00000004717puf60b10072.897Gasterosteus_aculeatus
ENSBTAG00000037493PUF609970.385ENSGACG00000001484-10069.423Gasterosteus_aculeatus
ENSBTAG00000037493PUF609998.276ENSGAGG00000013289PUF609397.917Gopherus_agassizii
ENSBTAG00000037493PUF6010099.245ENSGGOG00000004646PUF6010099.245Gorilla_gorilla
ENSBTAG00000037493PUF609984.820ENSHBUG00000015118puf60b10085.605Haplochromis_burtoni
ENSBTAG00000037493PUF609981.594ENSHBUG00000009634-10082.540Haplochromis_burtoni
ENSBTAG00000037493PUF6010098.936ENSHGLG00000006111PUF6010098.936Heterocephalus_glaber_female
ENSBTAG00000037493PUF6010098.936ENSHGLG00100012362PUF6010098.936Heterocephalus_glaber_male
ENSBTAG00000037493PUF609766.798ENSHCOG00000000378-9965.226Hippocampus_comes
ENSBTAG00000037493PUF609982.320ENSHCOG00000015541puf60b10081.919Hippocampus_comes
ENSBTAG00000037493PUF609882.231ENSIPUG00000002453puf60a9982.609Ictalurus_punctatus
ENSBTAG00000037493PUF609878.947ENSIPUG00000004660puf60b9978.719Ictalurus_punctatus
ENSBTAG00000037493PUF6010098.932ENSSTOG00000025037PUF6010098.932Ictidomys_tridecemlineatus
ENSBTAG00000037493PUF6010099.110ENSJJAG00000001076Puf6010099.110Jaculus_jaculus
ENSBTAG00000037493PUF609885.221ENSKMAG00000016745puf60b10086.372Kryptolebias_marmoratus
ENSBTAG00000037493PUF609878.261ENSKMAG00000010106-10075.746Kryptolebias_marmoratus
ENSBTAG00000037493PUF609983.117ENSLBEG00000012505puf60b10083.117Labrus_bergylta
ENSBTAG00000037493PUF606990.909ENSLACG00000005456PUF6010090.437Latimeria_chalumnae
ENSBTAG00000037493PUF6010089.962ENSLOCG00000010106puf60b10088.555Lepisosteus_oculatus
ENSBTAG00000037493PUF609998.084ENSLAFG00000022929PUF6010095.722Loxodonta_africana
ENSBTAG00000037493PUF6010099.245ENSMFAG00000043373PUF6010099.245Macaca_fascicularis
ENSBTAG00000037493PUF6010099.245ENSMMUG00000013558PUF6010099.245Macaca_mulatta
ENSBTAG00000037493PUF6010099.245ENSMNEG00000031099PUF6010099.245Macaca_nemestrina
ENSBTAG00000037493PUF609899.225ENSMLEG00000040009PUF6010099.225Mandrillus_leucophaeus
ENSBTAG00000037493PUF609984.848ENSMAMG00000010394puf60b10083.551Mastacembelus_armatus
ENSBTAG00000037493PUF609982.543ENSMAMG00000019476-9981.973Mastacembelus_armatus
ENSBTAG00000037493PUF609981.784ENSMZEG00005019425-9981.784Maylandia_zebra
ENSBTAG00000037493PUF609885.605ENSMZEG00005018515puf60b10085.605Maylandia_zebra
ENSBTAG00000037493PUF609998.276ENSMGAG00000013070PUF609997.905Meleagris_gallopavo
ENSBTAG00000037493PUF6010077.009ENSMAUG00000018549-10077.239Mesocricetus_auratus
ENSBTAG00000037493PUF607298.529ENSMAUG00000014267-10098.529Mesocricetus_auratus
ENSBTAG00000037493PUF6010099.623ENSMICG00000012226PUF6010099.623Microcebus_murinus
ENSBTAG00000037493PUF6010098.759ENSMOCG00000018780Puf6010098.759Microtus_ochrogaster
ENSBTAG00000037493PUF6010072.433ENSMMOG00000018059-9976.712Mola_mola
ENSBTAG00000037493PUF609885.988ENSMMOG00000004217puf60b10085.988Mola_mola
ENSBTAG00000037493PUF609999.042ENSMODG00000009161PUF6010097.248Monodelphis_domestica
ENSBTAG00000037493PUF609980.492ENSMALG00000000200-9979.096Monopterus_albus
ENSBTAG00000037493PUF609977.505ENSMALG00000006797puf60b9977.652Monopterus_albus
ENSBTAG00000037493PUF6010098.582MGP_CAROLIEiJ_G0019910Puf6010098.582Mus_caroli
ENSBTAG00000037493PUF6010098.582ENSMUSG00000002524Puf6010098.582Mus_musculus
ENSBTAG00000037493PUF6010098.582MGP_PahariEiJ_G0019920Puf6010098.582Mus_pahari
ENSBTAG00000037493PUF6010098.582MGP_SPRETEiJ_G0020812Puf6010098.582Mus_spretus
ENSBTAG00000037493PUF609999.617ENSMPUG00000008137PUF609798.736Mustela_putorius_furo
ENSBTAG00000037493PUF609998.659ENSMLUG00000000238-9898.014Myotis_lucifugus
ENSBTAG00000037493PUF6010091.698ENSMLUG00000013032-9895.248Myotis_lucifugus
ENSBTAG00000037493PUF6010098.936ENSNGAG00000000712Puf6010099.225Nannospalax_galili
ENSBTAG00000037493PUF608084.471ENSNBRG00000013047puf60b9784.471Neolamprologus_brichardi
ENSBTAG00000037493PUF609982.252ENSNBRG00000017223-9981.939Neolamprologus_brichardi
ENSBTAG00000037493PUF6010098.754ENSNLEG00000002156PUF6010098.754Nomascus_leucogenys
ENSBTAG00000037493PUF607499.659ENSOPRG00000002147PUF607599.659Ochotona_princeps
ENSBTAG00000037493PUF609674.162ENSODEG00000015513-9971.563Octodon_degus
ENSBTAG00000037493PUF6074100.000ENSODEG00000014024-100100.000Octodon_degus
ENSBTAG00000037493PUF6010084.717ENSONIG00000006247puf60b9984.848Oreochromis_niloticus
ENSBTAG00000037493PUF609981.664ENSONIG00000014030-9982.008Oreochromis_niloticus
ENSBTAG00000037493PUF609778.474ENSOANG00000006962PUF609978.405Ornithorhynchus_anatinus
ENSBTAG00000037493PUF609878.977ENSORLG00000028655-9979.087Oryzias_latipes
ENSBTAG00000037493PUF609985.009ENSORLG00000012279puf60b10085.221Oryzias_latipes
ENSBTAG00000037493PUF609985.009ENSORLG00020007333puf6010085.221Oryzias_latipes_hni
ENSBTAG00000037493PUF609978.868ENSORLG00020018144-9978.424Oryzias_latipes_hni
ENSBTAG00000037493PUF609984.121ENSORLG00015007718puf60b10085.086Oryzias_latipes_hsok
ENSBTAG00000037493PUF609979.127ENSORLG00015016833-9978.545Oryzias_latipes_hsok
ENSBTAG00000037493PUF609979.886ENSOMEG00000022185-9979.323Oryzias_melastigma
ENSBTAG00000037493PUF609982.714ENSOMEG00000001643puf60b10082.341Oryzias_melastigma
ENSBTAG00000037493PUF609999.617ENSOGAG00000006259PUF609998.039Otolemur_garnettii
ENSBTAG00000037493PUF609997.328ENSOARG00000016235PUF609997.514Ovis_aries
ENSBTAG00000037493PUF6010099.245ENSPPAG00000029933PUF6010099.245Pan_paniscus
ENSBTAG00000037493PUF6010099.434ENSPPRG00000003257PUF6010099.434Panthera_pardus
ENSBTAG00000037493PUF609998.327ENSPTIG00000009795PUF609997.126Panthera_tigris_altaica
ENSBTAG00000037493PUF6010099.057ENSPTRG00000020670PUF6010099.057Pan_troglodytes
ENSBTAG00000037493PUF609999.042ENSPTRG00000043963-9998.672Pan_troglodytes
ENSBTAG00000037493PUF6010099.245ENSPANG00000021936PUF6010099.245Papio_anubis
ENSBTAG00000037493PUF6010085.289ENSPKIG00000004295puf60a9992.353Paramormyrops_kingsleyae
ENSBTAG00000037493PUF6010086.891ENSPKIG00000012204puf60b10088.269Paramormyrops_kingsleyae
ENSBTAG00000037493PUF609998.084ENSPSIG00000004679PUF609998.088Pelodiscus_sinensis
ENSBTAG00000037493PUF609884.542ENSPMGG00000013444puf60b9984.542Periophthalmus_magnuspinnatus
ENSBTAG00000037493PUF6010098.759ENSPEMG00000008820Puf6010098.759Peromyscus_maniculatus_bairdii
ENSBTAG00000037493PUF609999.617ENSPCIG00000020270PUF609999.424Phascolarctos_cinereus
ENSBTAG00000037493PUF609880.925ENSPFOG00000011118-9979.962Poecilia_formosa
ENSBTAG00000037493PUF6010083.738ENSPFOG00000019217puf60b10085.019Poecilia_formosa
ENSBTAG00000037493PUF609885.221ENSPLAG00000010754puf60b10086.372Poecilia_latipinna
ENSBTAG00000037493PUF609880.925ENSPLAG00000017025-9279.584Poecilia_latipinna
ENSBTAG00000037493PUF609880.925ENSPMEG00000009767-9279.962Poecilia_mexicana
ENSBTAG00000037493PUF6010083.738ENSPMEG00000000838puf60b10086.372Poecilia_mexicana
ENSBTAG00000037493PUF6010081.056ENSPREG00000005440puf60b10084.127Poecilia_reticulata
ENSBTAG00000037493PUF607997.602ENSPPYG00000018951-9597.602Pongo_abelii
ENSBTAG00000037493PUF607999.520ENSPCAG00000014837PUF6010099.520Procavia_capensis
ENSBTAG00000037493PUF6010099.434ENSPCOG00000027981PUF6010099.434Propithecus_coquereli
ENSBTAG00000037493PUF609899.367ENSPVAG00000016167PUF608199.367Pteropus_vampyrus
ENSBTAG00000037493PUF609981.784ENSPNYG00000004273-9981.784Pundamilia_nyererei
ENSBTAG00000037493PUF609885.605ENSPNYG00000002556puf60b10085.605Pundamilia_nyererei
ENSBTAG00000037493PUF609982.386ENSPNAG00000019909puf60a9984.766Pygocentrus_nattereri
ENSBTAG00000037493PUF609977.672ENSPNAG00000019415puf60b9176.893Pygocentrus_nattereri
ENSBTAG00000037493PUF6010098.537ENSRNOG00000009960Puf6010098.537Rattus_norvegicus
ENSBTAG00000037493PUF6010099.245ENSRBIG00000035274PUF6010099.245Rhinopithecus_bieti
ENSBTAG00000037493PUF6010099.245ENSRROG00000029360PUF6010099.245Rhinopithecus_roxellana
ENSBTAG00000037493PUF609998.084ENSSBOG00000027089PUF609997.543Saimiri_boliviensis_boliviensis
ENSBTAG00000037493PUF609098.936ENSSHAG00000006668PUF609696.471Sarcophilus_harrisii
ENSBTAG00000037493PUF609882.510ENSSFOG00015019619puf60b9986.437Scleropages_formosus
ENSBTAG00000037493PUF609486.922ENSSFOG00015019371puf60a9887.324Scleropages_formosus
ENSBTAG00000037493PUF607392.933ENSSMAG00000016381puf60b7491.986Scophthalmus_maximus
ENSBTAG00000037493PUF609983.829ENSSDUG00000009935puf60b10083.673Seriola_dumerili
ENSBTAG00000037493PUF609980.153ENSSDUG00000007048-9979.773Seriola_dumerili
ENSBTAG00000037493PUF609985.741ENSSLDG00000024011puf60b10084.112Seriola_lalandi_dorsalis
ENSBTAG00000037493PUF609880.228ENSSLDG00000007366-9980.645Seriola_lalandi_dorsalis
ENSBTAG00000037493PUF606685.260ENSSPUG00000013518PUF609485.757Sphenodon_punctatus
ENSBTAG00000037493PUF609881.870ENSSPAG00000020285-10082.443Stegastes_partitus
ENSBTAG00000037493PUF609982.625ENSSPAG00000012144puf60b10083.925Stegastes_partitus
ENSBTAG00000037493PUF609999.425ENSSSCG00000038800PUF609899.406Sus_scrofa
ENSBTAG00000037493PUF609995.019ENSTGUG00000012797-10095.019Taeniopygia_guttata
ENSBTAG00000037493PUF609877.519ENSTRUG00000008843-10080.160Takifugu_rubripes
ENSBTAG00000037493PUF609984.121ENSTRUG00000005420puf60b10082.991Takifugu_rubripes
ENSBTAG00000037493PUF609977.778ENSTNIG00000003069-10077.820Tetraodon_nigroviridis
ENSBTAG00000037493PUF609984.440ENSTNIG00000013675puf60b10084.280Tetraodon_nigroviridis
ENSBTAG00000037493PUF607681.503ENSTBEG00000001899-10081.792Tupaia_belangeri
ENSBTAG00000037493PUF606196.284ENSTBEG00000002751-9996.271Tupaia_belangeri
ENSBTAG00000037493PUF609899.031ENSTTRG00000017088PUF6010099.031Tursiops_truncatus
ENSBTAG00000037493PUF6010099.623ENSUAMG00000024917PUF6010099.623Ursus_americanus
ENSBTAG00000037493PUF609994.828ENSUMAG00000000272PUF609993.682Ursus_maritimus
ENSBTAG00000037493PUF609999.617ENSVVUG00000022527PUF6010099.612Vulpes_vulpes
ENSBTAG00000037493PUF609994.615ENSXETG00000012469puf609994.632Xenopus_tropicalis
ENSBTAG00000037493PUF609881.958ENSXCOG00000012355puf60b10085.913Xiphophorus_couchianus
ENSBTAG00000037493PUF6010083.738ENSXMAG00000001862puf60b10086.372Xiphophorus_maculatus
ENSBTAG00000037493PUF6010077.609ENSXMAG00000010507-9979.724Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-IEAComponent
GO:0006397mRNA processing-IEAProcess
GO:0006915apoptotic process-IEAProcess
GO:0008380RNA splicing-IEAProcess

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