EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000037800 (Gene tree)
Gene ID: 507162
Gene Symbol: -
Alias: APOBEC3A
Full Name: -
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 3756 bases
Position: chr5:110530859-110534614
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000010196	APOBEC_N	PF08210.11	2.5e-39	1	1
ENSBTAP00000067633	APOBEC_N	PF08210.11	3.6e-39	1	1
ENSBTAP00000010196	APOBEC_C	PF05240.14	2.3e-29	1	1
ENSBTAP00000067633	APOBEC_C	PF05240.14	2.9e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000068034	-	994	-	ENSBTAP00000067633	203 (aa)	-	-
ENSBTAT00000010196	-	843	-	ENSBTAP00000010196	185 (aa)	-	F1ML73

Gene Model

Click here to download ENSBTAG00000037800's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000037800's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000037800	-	100	39.247	ENSBTAG00000007755	APOBEC3H	93	39.247
ENSBTAG00000037800	-	97	40.217	ENSBTAG00000018849	AICDA	88	40.217

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000037800	-	100	50.259	ENSG00000239713	APOBEC3G	96	50.259	Homo_sapiens
ENSBTAG00000037800	-	98	51.892	ENSAMEG00000010815	-	83	52.406	Ailuropoda_melanoleuca
ENSBTAG00000037800	-	98	47.027	ENSANAG00000028416	-	96	47.027	Aotus_nancymaae
ENSBTAG00000037800	-	98	50.000	ENSANAG00000031271	APOBEC3G	96	50.000	Aotus_nancymaae
ENSBTAG00000037800	-	88	49.697	ENSANAG00000027961	-	94	49.697	Aotus_nancymaae
ENSBTAG00000037800	-	98	51.596	ENSANAG00000020573	-	93	51.596	Aotus_nancymaae
ENSBTAG00000037800	-	95	48.901	ENSCJAG00000011578	-	73	48.901	Callithrix_jacchus
ENSBTAG00000037800	-	98	48.936	ENSCJAG00000023368	APOBEC3G	96	48.936	Callithrix_jacchus
ENSBTAG00000037800	-	99	47.423	ENSCAFG00000015211	-	63	47.423	Canis_familiaris
ENSBTAG00000037800	-	68	53.175	ENSCAFG00000023589	-	88	53.175	Canis_familiaris
ENSBTAG00000037800	-	100	46.486	ENSCAFG00020002661	-	80	48.404	Canis_lupus_dingo
ENSBTAG00000037800	-	98	47.872	ENSCAFG00020002641	-	80	48.404	Canis_lupus_dingo
ENSBTAG00000037800	-	99	78.142	ENSCHIG00000012694	-	92	78.804	Capra_hircus
ENSBTAG00000037800	-	99	47.895	ENSCCAG00000033147	-	93	48.691	Cebus_capucinus
ENSBTAG00000037800	-	98	48.404	ENSCCAG00000032232	-	91	48.404	Cebus_capucinus
ENSBTAG00000037800	-	98	49.479	ENSCCAG00000030928	-	90	49.479	Cebus_capucinus
ENSBTAG00000037800	-	98	44.149	ENSCCAG00000032509	-	97	44.149	Cebus_capucinus
ENSBTAG00000037800	-	99	48.447	ENSCSAG00000006376	APOBEC3G	85	48.447	Chlorocebus_sabaeus
ENSBTAG00000037800	-	98	53.061	ENSCANG00000029968	-	66	53.061	Colobus_angolensis_palliatus
ENSBTAG00000037800	-	97	35.678	ENSDNOG00000039749	-	79	37.158	Dasypus_novemcinctus
ENSBTAG00000037800	-	98	58.011	ENSEASG00005018643	-	79	58.011	Equus_asinus_asinus
ENSBTAG00000037800	-	98	57.692	ENSECAG00000032756	-	63	58.011	Equus_caballus
ENSBTAG00000037800	-	98	54.144	ENSECAG00000022371	APOBEC3Z1B	81	54.144	Equus_caballus
ENSBTAG00000037800	-	98	51.445	ENSGGOG00000013750	APOBEC3G	92	51.445	Gorilla_gorilla
ENSBTAG00000037800	-	98	44.920	ENSLAFG00000020906	-	88	44.920	Loxodonta_africana
ENSBTAG00000037800	-	97	48.087	ENSLAFG00000005275	-	97	48.087	Loxodonta_africana
ENSBTAG00000037800	-	99	44.385	ENSLAFG00000008890	-	90	44.385	Loxodonta_africana
ENSBTAG00000037800	-	100	49.474	ENSMFAG00000044711	APOBEC3G	86	49.474	Macaca_fascicularis
ENSBTAG00000037800	-	100	50.000	ENSMMUG00000039346	APOBEC3G	94	50.000	Macaca_mulatta
ENSBTAG00000037800	-	100	50.000	ENSMNEG00000038847	APOBEC3G	94	50.000	Macaca_nemestrina
ENSBTAG00000037800	-	98	48.128	ENSMLEG00000024444	APOBEC3G	92	48.663	Mandrillus_leucophaeus
ENSBTAG00000037800	-	100	47.396	ENSMICG00000047191	-	100	47.396	Microcebus_murinus
ENSBTAG00000037800	-	98	50.000	ENSMICG00000043748	-	91	50.000	Microcebus_murinus
ENSBTAG00000037800	-	99	48.634	ENSMPUG00000013235	-	94	48.634	Mustela_putorius_furo
ENSBTAG00000037800	-	100	46.907	ENSMLUG00000024853	-	99	46.907	Myotis_lucifugus
ENSBTAG00000037800	-	99	47.826	ENSMLUG00000024957	-	85	48.913	Myotis_lucifugus
ENSBTAG00000037800	-	99	45.652	ENSMLUG00000023022	-	83	46.486	Myotis_lucifugus
ENSBTAG00000037800	-	85	49.606	ENSMLUG00000026771	-	68	49.606	Myotis_lucifugus
ENSBTAG00000037800	-	97	48.045	ENSMLUG00000000517	-	100	48.045	Myotis_lucifugus
ENSBTAG00000037800	-	93	42.197	ENSMLUG00000028652	-	79	41.436	Myotis_lucifugus
ENSBTAG00000037800	-	99	47.778	ENSMLUG00000000977	-	94	47.778	Myotis_lucifugus
ENSBTAG00000037800	-	100	48.404	ENSMLUG00000014565	-	100	48.404	Myotis_lucifugus
ENSBTAG00000037800	-	62	45.217	ENSMLUG00000022226	-	84	46.957	Myotis_lucifugus
ENSBTAG00000037800	-	98	48.921	ENSMLUG00000008631	-	99	48.921	Myotis_lucifugus
ENSBTAG00000037800	-	89	48.276	ENSNLEG00000018922	-	89	48.276	Nomascus_leucogenys
ENSBTAG00000037800	-	98	46.196	ENSOPRG00000002326	-	98	46.196	Ochotona_princeps
ENSBTAG00000037800	-	90	45.349	ENSOCUG00000023532	-	65	45.349	Oryctolagus_cuniculus
ENSBTAG00000037800	-	98	53.763	ENSOGAG00000032518	-	96	53.763	Otolemur_garnettii
ENSBTAG00000037800	-	97	50.262	ENSOGAG00000024822	-	94	49.744	Otolemur_garnettii
ENSBTAG00000037800	-	100	80.645	ENSOARG00000016213	APOBEC3Z1	100	80.645	Ovis_aries
ENSBTAG00000037800	-	100	51.295	ENSPPAG00000033277	-	77	52.604	Pan_paniscus
ENSBTAG00000037800	-	100	52.332	ENSPTRG00000014387	APOBEC3G	97	52.332	Pan_troglodytes
ENSBTAG00000037800	-	100	49.474	ENSPPYG00000011833	APOBEC3G	89	49.474	Pongo_abelii
ENSBTAG00000037800	-	100	46.073	ENSPCAG00000015518	-	63	47.619	Procavia_capensis
ENSBTAG00000037800	-	70	47.692	ENSPCAG00000001848	-	93	47.692	Procavia_capensis
ENSBTAG00000037800	-	91	50.581	ENSPCOG00000016357	-	84	50.581	Propithecus_coquereli
ENSBTAG00000037800	-	100	48.663	ENSPVAG00000004045	-	94	48.663	Pteropus_vampyrus
ENSBTAG00000037800	-	100	51.053	ENSRBIG00000035436	APOBEC3G	91	51.053	Rhinopithecus_bieti
ENSBTAG00000037800	-	100	48.187	ENSSBOG00000023468	-	77	49.479	Saimiri_boliviensis_boliviensis
ENSBTAG00000037800	-	98	46.667	ENSSBOG00000025673	-	85	46.667	Saimiri_boliviensis_boliviensis
ENSBTAG00000037800	-	100	48.936	ENSSBOG00000018208	-	99	48.936	Saimiri_boliviensis_boliviensis
ENSBTAG00000037800	-	100	49.738	ENSSBOG00000021384	-	96	51.053	Saimiri_boliviensis_boliviensis
ENSBTAG00000037800	-	98	49.733	ENSSBOG00000026566	-	96	49.733	Saimiri_boliviensis_boliviensis
ENSBTAG00000037800	-	98	51.613	ENSSBOG00000029091	-	90	51.613	Saimiri_boliviensis_boliviensis
ENSBTAG00000037800	-	100	65.405	ENSTTRG00000009395	-	94	65.405	Tursiops_truncatus
ENSBTAG00000037800	-	98	51.087	ENSUMAG00000014447	-	93	51.087	Ursus_maritimus
ENSBTAG00000037800	-	98	49.730	ENSUMAG00000002249	-	87	50.000	Ursus_maritimus
ENSBTAG00000037800	-	59	44.643	ENSVVUG00000022583	-	50	44.643	Vulpes_vulpes