EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSBTAG00000046406 (Gene tree)
Gene ID: 614948
Gene Symbol: R3HDM4
Alias: -
Full Name: Bos taurus R3H domain containing 4 (R3HDM4)%2C mRNA.
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 10178 bases
Position: chr7:43439368-43449545
Accession: NM_001046548
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000059446	R3H	PF01424.22	2.4e-06	1	1
ENSBTAP00000054872	R3H	PF01424.22	2.5e-06	1	1
ENSBTAP00000073011	R3H	PF01424.22	3e-06	1	1
ENSBTAP00000064171	R3H	PF01424.22	6.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000070652	-	2276	-	ENSBTAP00000064171	457 (aa)	-	-
ENSBTAT00000065311	-	1758	-	ENSBTAP00000054872	272 (aa)	-	Q2KIL7
ENSBTAT00000083096	-	810	-	ENSBTAP00000059446	269 (aa)	-	-
ENSBTAT00000066824	-	1793	XM_005209307	ENSBTAP00000073011	296 (aa)	XP_005209364	UPI000383DBCA

Gene Model

Click here to download ENSBTAG00000046406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000046406's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000046406	R3HDM4	100	91.912	ENSG00000198858	R3HDM4	94	94.444	Homo_sapiens
ENSBTAG00000046406	R3HDM4	91	94.262	ENSAMEG00000003001	R3HDM4	100	94.262	Ailuropoda_melanoleuca
ENSBTAG00000046406	R3HDM4	88	57.563	ENSACIG00000004672	r3hdm4	91	57.563	Amphilophus_citrinellus
ENSBTAG00000046406	R3HDM4	87	53.191	ENSATEG00000015913	r3hdm4	91	54.468	Anabas_testudineus
ENSBTAG00000046406	R3HDM4	90	95.062	ENSANAG00000029748	R3HDM4	100	95.062	Aotus_nancymaae
ENSBTAG00000046406	R3HDM4	92	92.829	ENSCJAG00000020114	R3HDM4	93	92.829	Callithrix_jacchus
ENSBTAG00000046406	R3HDM4	100	92.279	ENSCAFG00000019665	R3HDM4	100	92.279	Canis_familiaris
ENSBTAG00000046406	R3HDM4	100	91.912	ENSCAFG00020016880	R3HDM4	100	91.912	Canis_lupus_dingo
ENSBTAG00000046406	R3HDM4	100	98.529	ENSCHIG00000020110	R3HDM4	100	98.529	Capra_hircus
ENSBTAG00000046406	R3HDM4	92	91.935	ENSCCAG00000019955	R3HDM4	94	89.922	Cebus_capucinus
ENSBTAG00000046406	R3HDM4	100	89.781	ENSCATG00000037269	R3HDM4	93	93.651	Cercocebus_atys
ENSBTAG00000046406	R3HDM4	91	91.393	ENSCLAG00000007094	R3HDM4	100	91.393	Chinchilla_lanigera
ENSBTAG00000046406	R3HDM4	100	90.809	ENSCSAG00000012574	R3HDM4	93	94.000	Chlorocebus_sabaeus
ENSBTAG00000046406	R3HDM4	100	67.647	ENSCPBG00000009805	R3HDM4	100	68.182	Chrysemys_picta_bellii
ENSBTAG00000046406	R3HDM4	91	94.286	ENSCANG00000040439	R3HDM4	86	94.672	Colobus_angolensis_palliatus
ENSBTAG00000046406	R3HDM4	99	82.353	ENSCGRG00001021650	R3hdm4	97	84.825	Cricetulus_griseus_chok1gshd
ENSBTAG00000046406	R3HDM4	99	82.353	ENSCGRG00000013169	R3hdm4	97	84.825	Cricetulus_griseus_crigri
ENSBTAG00000046406	R3HDM4	88	53.782	ENSCSEG00000018211	r3hdm4	91	53.782	Cynoglossus_semilaevis
ENSBTAG00000046406	R3HDM4	91	56.400	ENSCVAG00000017127	r3hdm4	93	56.400	Cyprinodon_variegatus
ENSBTAG00000046406	R3HDM4	95	86.154	ENSDORG00000006605	R3hdm4	100	90.204	Dipodomys_ordii
ENSBTAG00000046406	R3HDM4	91	95.082	ENSEASG00005021556	R3HDM4	92	92.520	Equus_asinus_asinus
ENSBTAG00000046406	R3HDM4	91	95.161	ENSECAG00000000003	R3HDM4	100	93.015	Equus_caballus
ENSBTAG00000046406	R3HDM4	100	92.647	ENSFCAG00000042437	R3HDM4	100	92.647	Felis_catus
ENSBTAG00000046406	R3HDM4	90	69.547	ENSFALG00000013938	R3HDM4	100	69.547	Ficedula_albicollis
ENSBTAG00000046406	R3HDM4	91	90.204	ENSFDAG00000017040	R3HDM4	100	90.204	Fukomys_damarensis
ENSBTAG00000046406	R3HDM4	100	53.285	ENSFHEG00000017636	r3hdm4	93	56.400	Fundulus_heteroclitus
ENSBTAG00000046406	R3HDM4	91	51.807	ENSGMOG00000001231	r3hdm4	98	52.400	Gadus_morhua
ENSBTAG00000046406	R3HDM4	96	66.794	ENSGALG00000001998	R3HDM4	99	66.794	Gallus_gallus
ENSBTAG00000046406	R3HDM4	100	54.212	ENSGAFG00000004173	r3hdm4	93	57.028	Gambusia_affinis
ENSBTAG00000046406	R3HDM4	89	71.667	ENSGAGG00000019698	R3HDM4	100	67.045	Gopherus_agassizii
ENSBTAG00000046406	R3HDM4	95	91.406	ENSGGOG00000008040	R3HDM4	100	94.672	Gorilla_gorilla
ENSBTAG00000046406	R3HDM4	88	56.485	ENSHBUG00000014810	r3hdm4	91	57.741	Haplochromis_burtoni
ENSBTAG00000046406	R3HDM4	100	85.294	ENSHGLG00000016194	R3HDM4	100	86.029	Heterocephalus_glaber_female
ENSBTAG00000046406	R3HDM4	88	55.508	ENSHCOG00000008422	r3hdm4	91	55.508	Hippocampus_comes
ENSBTAG00000046406	R3HDM4	88	56.723	ENSIPUG00000006716	r3hdm4	91	56.723	Ictalurus_punctatus
ENSBTAG00000046406	R3HDM4	91	90.984	ENSSTOG00000023015	R3HDM4	100	90.984	Ictidomys_tridecemlineatus
ENSBTAG00000046406	R3HDM4	99	86.765	ENSJJAG00000012475	R3hdm4	100	86.765	Jaculus_jaculus
ENSBTAG00000046406	R3HDM4	91	56.400	ENSKMAG00000005853	r3hdm4	95	55.212	Kryptolebias_marmoratus
ENSBTAG00000046406	R3HDM4	88	55.230	ENSLBEG00000000730	r3hdm4	91	55.230	Labrus_bergylta
ENSBTAG00000046406	R3HDM4	95	58.984	ENSLACG00000016445	R3HDM4	98	58.984	Latimeria_chalumnae
ENSBTAG00000046406	R3HDM4	88	58.159	ENSLOCG00000002423	r3hdm4	91	58.159	Lepisosteus_oculatus
ENSBTAG00000046406	R3HDM4	90	92.181	ENSLAFG00000017796	R3HDM4	94	92.213	Loxodonta_africana
ENSBTAG00000046406	R3HDM4	100	91.176	ENSMFAG00000044131	R3HDM4	93	94.400	Macaca_fascicularis
ENSBTAG00000046406	R3HDM4	100	83.456	ENSMMUG00000009682	R3HDM4	90	94.170	Macaca_mulatta
ENSBTAG00000046406	R3HDM4	91	94.672	ENSMNEG00000044115	R3HDM4	99	94.672	Macaca_nemestrina
ENSBTAG00000046406	R3HDM4	93	91.235	ENSMLEG00000035693	R3HDM4	93	91.667	Mandrillus_leucophaeus
ENSBTAG00000046406	R3HDM4	76	58.252	ENSMAMG00000005652	r3hdm4	82	58.252	Mastacembelus_armatus
ENSBTAG00000046406	R3HDM4	99	79.044	ENSMAUG00000010611	R3hdm4	95	86.531	Mesocricetus_auratus
ENSBTAG00000046406	R3HDM4	100	89.338	ENSMICG00000010124	R3HDM4	100	89.338	Microcebus_murinus
ENSBTAG00000046406	R3HDM4	99	81.550	ENSMOCG00000002646	R3hdm4	97	84.375	Microtus_ochrogaster
ENSBTAG00000046406	R3HDM4	88	55.042	ENSMMOG00000008253	r3hdm4	92	55.042	Mola_mola
ENSBTAG00000046406	R3HDM4	86	68.534	ENSMODG00000005698	R3HDM4	100	68.534	Monodelphis_domestica
ENSBTAG00000046406	R3HDM4	88	55.462	ENSMALG00000018856	r3hdm4	91	55.462	Monopterus_albus
ENSBTAG00000046406	R3HDM4	99	80.812	MGP_CAROLIEiJ_G0015551	R3hdm4	97	83.594	Mus_caroli
ENSBTAG00000046406	R3HDM4	99	80.812	ENSMUSG00000035781	R3hdm4	97	83.594	Mus_musculus
ENSBTAG00000046406	R3HDM4	99	80.812	MGP_PahariEiJ_G0030964	R3hdm4	95	86.000	Mus_pahari
ENSBTAG00000046406	R3HDM4	99	81.181	MGP_SPRETEiJ_G0016369	-	80	85.317	Mus_spretus
ENSBTAG00000046406	R3HDM4	93	91.566	ENSMPUG00000009394	R3HDM4	93	91.600	Mustela_putorius_furo
ENSBTAG00000046406	R3HDM4	88	56.067	ENSNBRG00000004438	r3hdm4	91	57.322	Neolamprologus_brichardi
ENSBTAG00000046406	R3HDM4	84	92.641	ENSNLEG00000001022	R3HDM4	100	92.641	Nomascus_leucogenys
ENSBTAG00000046406	R3HDM4	91	66.802	ENSMEUG00000011020	R3HDM4	99	68.354	Notamacropus_eugenii
ENSBTAG00000046406	R3HDM4	100	88.235	ENSODEG00000011745	R3HDM4	100	87.868	Octodon_degus
ENSBTAG00000046406	R3HDM4	100	52.555	ENSONIG00000012675	r3hdm4	84	57.322	Oreochromis_niloticus
ENSBTAG00000046406	R3HDM4	88	56.723	ENSOMEG00000003005	r3hdm4	91	56.723	Oryzias_melastigma
ENSBTAG00000046406	R3HDM4	90	92.562	ENSOGAG00000025656	R3HDM4	94	91.129	Otolemur_garnettii
ENSBTAG00000046406	R3HDM4	91	99.180	ENSOARG00000009945	R3HDM4	100	99.180	Ovis_aries
ENSBTAG00000046406	R3HDM4	95	91.797	ENSPPAG00000042371	R3HDM4	100	95.082	Pan_paniscus
ENSBTAG00000046406	R3HDM4	100	91.176	ENSPANG00000015203	R3HDM4	93	94.400	Papio_anubis
ENSBTAG00000046406	R3HDM4	86	56.087	ENSPKIG00000007421	r3hdm4	88	55.983	Paramormyrops_kingsleyae
ENSBTAG00000046406	R3HDM4	93	50.787	ENSPMGG00000020467	r3hdm4	95	50.787	Periophthalmus_magnuspinnatus
ENSBTAG00000046406	R3HDM4	90	88.889	ENSPEMG00000008365	Tmem259	100	88.889	Peromyscus_maniculatus_bairdii
ENSBTAG00000046406	R3HDM4	91	56.225	ENSPFOG00000003199	r3hdm4	93	56.225	Poecilia_formosa
ENSBTAG00000046406	R3HDM4	91	55.823	ENSPMEG00000014183	r3hdm4	93	55.823	Poecilia_mexicana
ENSBTAG00000046406	R3HDM4	100	53.846	ENSPREG00000010709	r3hdm4	93	56.627	Poecilia_reticulata
ENSBTAG00000046406	R3HDM4	100	89.706	ENSPPYG00000009297	R3HDM4	97	90.530	Pongo_abelii
ENSBTAG00000046406	R3HDM4	56	91.447	ENSPCAG00000010997	R3HDM4	56	91.447	Procavia_capensis
ENSBTAG00000046406	R3HDM4	100	89.338	ENSPCOG00000016785	R3HDM4	93	92.063	Propithecus_coquereli
ENSBTAG00000046406	R3HDM4	88	56.485	ENSPNYG00000017489	r3hdm4	91	57.741	Pundamilia_nyererei
ENSBTAG00000046406	R3HDM4	99	80.812	ENSRNOG00000011489	R3hdm4	97	82.812	Rattus_norvegicus
ENSBTAG00000046406	R3HDM4	91	95.082	ENSRROG00000028842	R3HDM4	91	95.082	Rhinopithecus_roxellana
ENSBTAG00000046406	R3HDM4	90	91.903	ENSSBOG00000019298	R3HDM4	73	91.968	Saimiri_boliviensis_boliviensis
ENSBTAG00000046406	R3HDM4	54	71.918	ENSSHAG00000003036	-	100	71.918	Sarcophilus_harrisii
ENSBTAG00000046406	R3HDM4	88	55.882	ENSSFOG00015020574	r3hdm4	87	55.882	Scleropages_formosus
ENSBTAG00000046406	R3HDM4	88	56.904	ENSSMAG00000021090	r3hdm4	68	56.904	Scophthalmus_maximus
ENSBTAG00000046406	R3HDM4	88	57.322	ENSSDUG00000008488	r3hdm4	91	57.322	Seriola_dumerili
ENSBTAG00000046406	R3HDM4	88	57.322	ENSSLDG00000025328	r3hdm4	91	57.322	Seriola_lalandi_dorsalis
ENSBTAG00000046406	R3HDM4	93	68.872	ENSSPUG00000005434	R3HDM4	100	68.872	Sphenodon_punctatus
ENSBTAG00000046406	R3HDM4	87	55.085	ENSSPAG00000002562	r3hdm4	90	55.085	Stegastes_partitus
ENSBTAG00000046406	R3HDM4	100	94.853	ENSSSCG00000013419	R3HDM4	100	94.853	Sus_scrofa
ENSBTAG00000046406	R3HDM4	77	65.550	ENSTGUG00000000663	R3HDM4	100	65.550	Taeniopygia_guttata
ENSBTAG00000046406	R3HDM4	91	93.443	ENSTTRG00000001470	R3HDM4	100	93.443	Tursiops_truncatus
ENSBTAG00000046406	R3HDM4	100	81.985	ENSUAMG00000005751	R3HDM4	100	95.067	Ursus_americanus
ENSBTAG00000046406	R3HDM4	100	93.015	ENSVVUG00000022685	R3HDM4	100	93.015	Vulpes_vulpes
ENSBTAG00000046406	R3HDM4	88	47.059	ENSXETG00000033624	R3HDM4	92	47.059	Xenopus_tropicalis
ENSBTAG00000046406	R3HDM4	100	53.285	ENSXCOG00000005127	r3hdm4	93	56.000	Xiphophorus_couchianus
ENSBTAG00000046406	R3HDM4	100	53.480	ENSXMAG00000022875	r3hdm4	93	56.225	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component