EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000046902 (Gene tree)
Gene ID: 101908085
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chr17:24091849-24092961
Accession: 101908085
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000060539	RRM_5	PF13893.6	4.5e-15	1	3
ENSBTAP00000060539	RRM_5	PF13893.6	4.5e-15	2	3
ENSBTAP00000060539	RRM_5	PF13893.6	4.5e-15	3	3
ENSBTAP00000060539	RRM_1	PF00076.22	4.9e-84	1	4
ENSBTAP00000060539	RRM_1	PF00076.22	4.9e-84	2	4
ENSBTAP00000060539	RRM_1	PF00076.22	4.9e-84	3	4
ENSBTAP00000060539	RRM_1	PF00076.22	4.9e-84	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000063185	PABPC4L-201	1113	-	ENSBTAP00000060539	370 (aa)	XP_005217642	UPI00005C2129

Gene Model

Click here to download ENSBTAG00000046902's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03013	RNA transport	KEGG
bta03015	mRNA surveillance pathway	KEGG
bta03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000046902's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000046902	PABPC4L	99	40.526	ENSBTAG00000012495	SF3B4	56	40.526
ENSBTAG00000046902	PABPC4L	98	64.045	ENSBTAG00000019942	PABPC5	96	64.011
ENSBTAG00000046902	PABPC4L	95	60.606	ENSBTAG00000050902	-	96	60.606
ENSBTAG00000046902	PABPC4L	56	36.486	ENSBTAG00000002520	CELF1	58	36.486
ENSBTAG00000046902	PABPC4L	87	32.927	ENSBTAG00000008937	CELF2	64	32.927
ENSBTAG00000046902	PABPC4L	98	30.519	ENSBTAG00000021046	ELAVL4	88	30.519
ENSBTAG00000046902	PABPC4L	90	68.354	ENSBTAG00000055300	-	96	68.354
ENSBTAG00000046902	PABPC4L	99	69.730	ENSBTAG00000046358	PABPC1	60	69.730
ENSBTAG00000046902	PABPC4L	95	60.500	ENSBTAG00000052491	-	94	60.500
ENSBTAG00000046902	PABPC4L	94	65.031	ENSBTAG00000048536	-	93	65.031
ENSBTAG00000046902	PABPC4L	99	30.435	ENSBTAG00000014412	ELAVL3	90	30.435
ENSBTAG00000046902	PABPC4L	90	56.459	ENSBTAG00000016849	PABPC1L	67	56.459
ENSBTAG00000046902	PABPC4L	97	40.828	ENSBTAG00000012793	-	53	40.828
ENSBTAG00000046902	PABPC4L	94	30.387	ENSBTAG00000045937	-	50	30.270
ENSBTAG00000046902	PABPC4L	99	74.324	ENSBTAG00000017125	PABPC4	60	74.324

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000046902	PABPC4L	99	89.702	ENSG00000254535	PABPC4L	99	89.702	Homo_sapiens
ENSBTAG00000046902	PABPC4L	99	87.534	ENSANAG00000017199	PABPC4L	86	87.534	Aotus_nancymaae
ENSBTAG00000046902	PABPC4L	99	87.805	ENSCJAG00000045332	PABPC4L	86	87.805	Callithrix_jacchus
ENSBTAG00000046902	PABPC4L	99	76.087	ENSCAFG00020019182	-	55	76.087	Canis_lupus_dingo
ENSBTAG00000046902	PABPC4L	100	99.730	ENSCHIG00000007231	PABPC4L	100	99.730	Capra_hircus
ENSBTAG00000046902	PABPC4L	97	79.341	ENSCAPG00000000555	PABPC4L	100	79.341	Cavia_aperea
ENSBTAG00000046902	PABPC4L	99	76.423	ENSCPOG00000033167	PABPC4L	100	76.423	Cavia_porcellus
ENSBTAG00000046902	PABPC4L	99	87.805	ENSCCAG00000031681	PABPC4L	86	87.805	Cebus_capucinus
ENSBTAG00000046902	PABPC4L	99	82.114	ENSCLAG00000017628	PABPC4L	99	82.114	Chinchilla_lanigera
ENSBTAG00000046902	PABPC4L	99	86.992	ENSCANG00000037677	PABPC4L	99	86.992	Colobus_angolensis_palliatus
ENSBTAG00000046902	PABPC4L	99	82.114	ENSCGRG00001002070	Pabpc4l	99	82.114	Cricetulus_griseus_chok1gshd
ENSBTAG00000046902	PABPC4L	99	82.114	ENSCGRG00000020086	Pabpc4l	99	82.114	Cricetulus_griseus_crigri
ENSBTAG00000046902	PABPC4L	99	89.973	ENSDNOG00000031077	PABPC4L	95	89.973	Dasypus_novemcinctus
ENSBTAG00000046902	PABPC4L	100	92.432	ENSEASG00005007883	PABPC4L	100	92.432	Equus_asinus_asinus
ENSBTAG00000046902	PABPC4L	100	92.703	ENSECAG00000031416	PABPC4L	100	92.703	Equus_caballus
ENSBTAG00000046902	PABPC4L	100	93.514	ENSFCAG00000028270	PABPC4L	100	93.514	Felis_catus
ENSBTAG00000046902	PABPC4L	100	81.081	ENSFDAG00000019606	PABPC4L	100	81.081	Fukomys_damarensis
ENSBTAG00000046902	PABPC4L	99	89.702	ENSGGOG00000024991	PABPC4L	99	89.702	Gorilla_gorilla
ENSBTAG00000046902	PABPC4L	100	81.351	ENSHGLG00000020104	PABPC4L	100	81.351	Heterocephalus_glaber_female
ENSBTAG00000046902	PABPC4L	100	81.351	ENSHGLG00100020648	PABPC4L	100	81.351	Heterocephalus_glaber_male
ENSBTAG00000046902	PABPC4L	99	84.595	ENSSTOG00000019472	PABPC4L	99	84.595	Ictidomys_tridecemlineatus
ENSBTAG00000046902	PABPC4L	100	81.892	ENSJJAG00000004090	Pabpc4l	100	81.892	Jaculus_jaculus
ENSBTAG00000046902	PABPC4L	99	81.301	ENSMAUG00000016313	Pabpc4l	99	81.301	Mesocricetus_auratus
ENSBTAG00000046902	PABPC4L	99	89.973	ENSMICG00000029683	PABPC4L	99	89.973	Microcebus_murinus
ENSBTAG00000046902	PABPC4L	99	82.385	ENSMOCG00000007551	Pabpc4l	99	82.385	Microtus_ochrogaster
ENSBTAG00000046902	PABPC4L	99	79.133	MGP_CAROLIEiJ_G0024968	Pabpc4l	99	79.133	Mus_caroli
ENSBTAG00000046902	PABPC4L	99	79.404	ENSMUSG00000090919	Pabpc4l	100	78.488	Mus_musculus
ENSBTAG00000046902	PABPC4L	99	79.675	MGP_PahariEiJ_G0026409	Pabpc4l	100	79.070	Mus_pahari
ENSBTAG00000046902	PABPC4L	99	78.862	MGP_SPRETEiJ_G0025903	Pabpc4l	100	78.000	Mus_spretus
ENSBTAG00000046902	PABPC4L	99	81.572	ENSMLUG00000008254	PABPC4L	99	81.572	Myotis_lucifugus
ENSBTAG00000046902	PABPC4L	99	84.824	ENSNGAG00000001502	Pabpc4l	99	84.824	Nannospalax_galili
ENSBTAG00000046902	PABPC4L	99	89.431	ENSNLEG00000019300	PABPC4L	99	89.431	Nomascus_leucogenys
ENSBTAG00000046902	PABPC4L	99	83.198	ENSOGAG00000026166	PABPC4L	99	83.198	Otolemur_garnettii
ENSBTAG00000046902	PABPC4L	99	89.474	ENSPPAG00000043745	PABPC4L	93	89.474	Pan_paniscus
ENSBTAG00000046902	PABPC4L	100	92.973	ENSPPRG00000018628	PABPC4L	100	92.973	Panthera_pardus
ENSBTAG00000046902	PABPC4L	100	93.514	ENSPTIG00000010106	PABPC4L	100	93.514	Panthera_tigris_altaica
ENSBTAG00000046902	PABPC4L	99	89.474	ENSPTRG00000045513	-	78	89.474	Pan_troglodytes
ENSBTAG00000046902	PABPC4L	99	81.843	ENSPEMG00000012565	Pabpc4l	99	81.843	Peromyscus_maniculatus_bairdii
ENSBTAG00000046902	PABPC4L	99	89.431	ENSPCOG00000025578	PABPC4L	99	89.431	Propithecus_coquereli
ENSBTAG00000046902	PABPC4L	99	80.217	ENSRNOG00000029749	Pabpc4l	99	80.217	Rattus_norvegicus
ENSBTAG00000046902	PABPC4L	99	86.721	ENSRBIG00000030229	PABPC4L	99	86.721	Rhinopithecus_bieti
ENSBTAG00000046902	PABPC4L	99	86.450	ENSRROG00000020367	PABPC4L	99	86.450	Rhinopithecus_roxellana
ENSBTAG00000046902	PABPC4L	99	86.721	ENSSBOG00000016382	PABPC4L	99	86.721	Saimiri_boliviensis_boliviensis
ENSBTAG00000046902	PABPC4L	100	89.189	ENSSSCG00000009067	PABPC4L	100	89.189	Sus_scrofa
ENSBTAG00000046902	PABPC4L	100	93.243	ENSUAMG00000001289	PABPC4L	100	93.243	Ursus_americanus
ENSBTAG00000046902	PABPC4L	100	93.243	ENSUMAG00000014887	PABPC4L	100	93.243	Ursus_maritimus
ENSBTAG00000046902	PABPC4L	93	77.439	ENSVVUG00000011060	-	75	77.439	Vulpes_vulpes