EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000047266 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 360 bases
Position: chr25:34671471-34671830
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000055359	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000064226	-	360	-	ENSBTAP00000055359	119 (aa)	-	G3N0J6

Gene Model

Click here to download ENSBTAG00000047266's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000047266's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000047266	-	81	93.750	ENSBTAG00000012376	-	72	93.750
ENSBTAG00000047266	-	79	91.489	ENSBTAG00000055316	-	81	91.489
ENSBTAG00000047266	-	94	96.429	ENSBTAG00000008292	SNRPD1	94	96.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000047266	-	94	96.429	ENSG00000167088	SNRPD1	100	98.667	Homo_sapiens
ENSBTAG00000047266	-	94	92.857	ENSAPOG00000019446	snrpd1	61	92.857	Acanthochromis_polyacanthus
ENSBTAG00000047266	-	98	95.726	ENSAMEG00000002576	SNRPD1	100	95.726	Ailuropoda_melanoleuca
ENSBTAG00000047266	-	88	93.333	ENSACIG00000011263	snrpd1	94	93.333	Amphilophus_citrinellus
ENSBTAG00000047266	-	94	92.857	ENSAOCG00000007406	snrpd1	94	92.857	Amphiprion_ocellaris
ENSBTAG00000047266	-	94	88.393	ENSAPEG00000014961	snrpd1	94	88.393	Amphiprion_percula
ENSBTAG00000047266	-	88	93.333	ENSAPEG00000012539	SNRPD1	94	93.333	Amphiprion_percula
ENSBTAG00000047266	-	94	92.857	ENSATEG00000014399	snrpd1	94	93.333	Anabas_testudineus
ENSBTAG00000047266	-	92	95.455	ENSAPLG00000012256	SNRPD1	92	95.455	Anas_platyrhynchos
ENSBTAG00000047266	-	94	96.429	ENSACAG00000006364	SNRPD1	94	96.429	Anolis_carolinensis
ENSBTAG00000047266	-	94	96.429	ENSANAG00000025641	SNRPD1	94	96.429	Aotus_nancymaae
ENSBTAG00000047266	-	88	93.333	ENSACLG00000017406	snrpd1	94	93.333	Astatotilapia_calliptera
ENSBTAG00000047266	-	94	93.750	ENSAMXG00000004589	snrpd1	94	93.750	Astyanax_mexicanus
ENSBTAG00000047266	-	74	76.136	WBGene00004916	snr-3	76	71.875	Caenorhabditis_elegans
ENSBTAG00000047266	-	94	96.429	ENSCJAG00000042955	SNRPD1	94	96.429	Callithrix_jacchus
ENSBTAG00000047266	-	94	96.429	ENSCAFG00000018247	SNRPD1	94	96.429	Canis_familiaris
ENSBTAG00000047266	-	80	95.789	ENSCAFG00020015914	SNRPD1	74	95.789	Canis_lupus_dingo
ENSBTAG00000047266	-	92	96.364	ENSCHIG00000005557	SNRPD1	92	96.364	Capra_hircus
ENSBTAG00000047266	-	94	96.429	ENSTSYG00000030028	SNRPD1	94	96.429	Carlito_syrichta
ENSBTAG00000047266	-	91	96.296	ENSCAPG00000008103	SNRPD1	93	96.296	Cavia_aperea
ENSBTAG00000047266	-	94	96.429	ENSCPOG00000004679	SNRPD1	94	96.429	Cavia_porcellus
ENSBTAG00000047266	-	94	95.536	ENSCCAG00000020611	-	94	95.536	Cebus_capucinus
ENSBTAG00000047266	-	94	92.857	ENSCCAG00000016652	-	94	92.857	Cebus_capucinus
ENSBTAG00000047266	-	81	91.667	ENSCCAG00000005390	-	81	91.667	Cebus_capucinus
ENSBTAG00000047266	-	94	96.429	ENSCCAG00000032658	SNRPD1	94	96.429	Cebus_capucinus
ENSBTAG00000047266	-	94	96.429	ENSCATG00000039978	SNRPD1	94	96.429	Cercocebus_atys
ENSBTAG00000047266	-	94	96.429	ENSCLAG00000008691	SNRPD1	94	96.429	Chinchilla_lanigera
ENSBTAG00000047266	-	94	96.429	ENSCSAG00000017654	SNRPD1	94	96.429	Chlorocebus_sabaeus
ENSBTAG00000047266	-	94	96.429	ENSCPBG00000023143	SNRPD1	94	96.429	Chrysemys_picta_bellii
ENSBTAG00000047266	-	72	84.884	ENSCING00000024100	-	69	84.884	Ciona_intestinalis
ENSBTAG00000047266	-	73	82.759	ENSCSAVG00000004578	-	70	82.759	Ciona_savignyi
ENSBTAG00000047266	-	98	95.726	ENSCGRG00001021055	-	95	95.726	Cricetulus_griseus_chok1gshd
ENSBTAG00000047266	-	81	72.917	ENSCGRG00001009945	-	85	72.917	Cricetulus_griseus_chok1gshd
ENSBTAG00000047266	-	81	72.917	ENSCGRG00000006224	-	85	72.917	Cricetulus_griseus_crigri
ENSBTAG00000047266	-	98	95.726	ENSCGRG00000000490	-	95	95.726	Cricetulus_griseus_crigri
ENSBTAG00000047266	-	80	90.526	ENSCSEG00000018141	snrpd1	81	90.625	Cynoglossus_semilaevis
ENSBTAG00000047266	-	94	92.857	ENSCVAG00000000534	snrpd1	94	92.857	Cyprinodon_variegatus
ENSBTAG00000047266	-	94	93.750	ENSDARG00000011648	snrpd1	96	92.308	Danio_rerio
ENSBTAG00000047266	-	94	96.429	ENSDNOG00000040310	SNRPD1	94	96.429	Dasypus_novemcinctus
ENSBTAG00000047266	-	94	96.429	ENSDORG00000008349	Snrpd1	94	96.429	Dipodomys_ordii
ENSBTAG00000047266	-	79	78.723	FBgn0261933	SmD1	76	78.723	Drosophila_melanogaster
ENSBTAG00000047266	-	74	97.727	ENSETEG00000011689	SNRPD1	74	97.727	Echinops_telfairi
ENSBTAG00000047266	-	94	89.286	ENSEBUG00000003170	snrpd1	94	89.286	Eptatretus_burgeri
ENSBTAG00000047266	-	94	97.321	ENSEASG00005002433	SNRPD1	100	97.321	Equus_asinus_asinus
ENSBTAG00000047266	-	94	97.321	ENSECAG00000014373	SNRPD1	100	97.321	Equus_caballus
ENSBTAG00000047266	-	75	96.629	ENSEEUG00000004987	SNRPD1	100	96.629	Erinaceus_europaeus
ENSBTAG00000047266	-	93	81.982	ENSELUG00000000088	snrpd1	79	91.489	Esox_lucius
ENSBTAG00000047266	-	94	96.429	ENSFCAG00000012352	SNRPD1	94	96.429	Felis_catus
ENSBTAG00000047266	-	94	97.321	ENSFALG00000002646	SNRPD1	100	97.321	Ficedula_albicollis
ENSBTAG00000047266	-	94	93.750	ENSGMOG00000015607	snrpd1	94	93.750	Gadus_morhua
ENSBTAG00000047266	-	94	96.429	ENSGALG00000041334	SNRPD1	94	96.429	Gallus_gallus
ENSBTAG00000047266	-	94	92.857	ENSGAFG00000011171	snrpd1	94	92.857	Gambusia_affinis
ENSBTAG00000047266	-	94	93.750	ENSGACG00000005201	SNRPD1	94	93.750	Gasterosteus_aculeatus
ENSBTAG00000047266	-	94	96.429	ENSGAGG00000011197	SNRPD1	94	96.429	Gopherus_agassizii
ENSBTAG00000047266	-	94	96.429	ENSGGOG00000041053	SNRPD1	94	96.429	Gorilla_gorilla
ENSBTAG00000047266	-	81	90.625	ENSGGOG00000026706	-	80	90.625	Gorilla_gorilla
ENSBTAG00000047266	-	94	92.857	ENSHBUG00000003236	snrpd1	94	92.857	Haplochromis_burtoni
ENSBTAG00000047266	-	94	96.429	ENSHGLG00000007152	SNRPD1	94	96.429	Heterocephalus_glaber_female
ENSBTAG00000047266	-	94	96.429	ENSHGLG00100008618	SNRPD1	94	96.429	Heterocephalus_glaber_male
ENSBTAG00000047266	-	94	92.857	ENSIPUG00000003576	snrpd1	94	92.857	Ictalurus_punctatus
ENSBTAG00000047266	-	96	97.368	ENSSTOG00000000485	SNRPD1	97	97.368	Ictidomys_tridecemlineatus
ENSBTAG00000047266	-	94	96.429	ENSJJAG00000017698	Snrpd1	94	96.429	Jaculus_jaculus
ENSBTAG00000047266	-	94	92.857	ENSKMAG00000005987	snrpd1	94	92.857	Kryptolebias_marmoratus
ENSBTAG00000047266	-	94	92.857	ENSLBEG00000003327	snrpd1	94	92.857	Labrus_bergylta
ENSBTAG00000047266	-	94	96.429	ENSLACG00000001955	SNRPD1	94	96.429	Latimeria_chalumnae
ENSBTAG00000047266	-	92	94.545	ENSLOCG00000002003	snrpd1	94	94.545	Lepisosteus_oculatus
ENSBTAG00000047266	-	93	95.495	ENSLAFG00000005819	SNRPD1	94	95.495	Loxodonta_africana
ENSBTAG00000047266	-	94	96.429	ENSMFAG00000042080	SNRPD1	94	96.429	Macaca_fascicularis
ENSBTAG00000047266	-	92	95.455	ENSMMUG00000003992	SNRPD1	91	97.196	Macaca_mulatta
ENSBTAG00000047266	-	94	96.429	ENSMNEG00000041296	SNRPD1	94	96.429	Macaca_nemestrina
ENSBTAG00000047266	-	100	94.118	ENSMLEG00000028659	SNRPD1	94	96.429	Mandrillus_leucophaeus
ENSBTAG00000047266	-	94	92.857	ENSMAMG00000012971	snrpd1	94	92.857	Mastacembelus_armatus
ENSBTAG00000047266	-	94	92.857	ENSMZEG00005004685	snrpd1	94	92.857	Maylandia_zebra
ENSBTAG00000047266	-	92	95.455	ENSMGAG00000011598	SNRPD1	91	95.455	Meleagris_gallopavo
ENSBTAG00000047266	-	83	89.899	ENSMAUG00000006829	-	59	96.667	Mesocricetus_auratus
ENSBTAG00000047266	-	81	80.208	ENSMAUG00000016467	-	86	80.208	Mesocricetus_auratus
ENSBTAG00000047266	-	81	80.208	ENSMAUG00000016502	-	86	80.208	Mesocricetus_auratus
ENSBTAG00000047266	-	94	96.429	ENSMICG00000044066	SNRPD1	94	96.429	Microcebus_murinus
ENSBTAG00000047266	-	96	97.368	ENSMOCG00000017367	Snrpd1	94	97.368	Microtus_ochrogaster
ENSBTAG00000047266	-	94	92.857	ENSMMOG00000019089	snrpd1	94	92.857	Mola_mola
ENSBTAG00000047266	-	96	97.368	ENSMODG00000021487	SNRPD1	98	97.368	Monodelphis_domestica
ENSBTAG00000047266	-	94	92.857	ENSMALG00000014459	snrpd1	94	92.857	Monopterus_albus
ENSBTAG00000047266	-	94	96.429	MGP_CAROLIEiJ_G0021994	Snrpd1	94	96.429	Mus_caroli
ENSBTAG00000047266	-	94	96.429	ENSMUSG00000002477	Snrpd1	94	96.429	Mus_musculus
ENSBTAG00000047266	-	94	96.429	MGP_PahariEiJ_G0018731	Snrpd1	94	96.429	Mus_pahari
ENSBTAG00000047266	-	94	96.429	MGP_SPRETEiJ_G0022910	Snrpd1	94	96.429	Mus_spretus
ENSBTAG00000047266	-	94	95.536	ENSMPUG00000020041	-	94	95.536	Mustela_putorius_furo
ENSBTAG00000047266	-	98	95.726	ENSMPUG00000005567	-	100	95.726	Mustela_putorius_furo
ENSBTAG00000047266	-	79	95.745	ENSMLUG00000009124	SNRPD1	73	95.745	Myotis_lucifugus
ENSBTAG00000047266	-	94	96.429	ENSNGAG00000023946	Snrpd1	94	96.429	Nannospalax_galili
ENSBTAG00000047266	-	79	91.489	ENSNBRG00000012119	snrpd1	78	91.489	Neolamprologus_brichardi
ENSBTAG00000047266	-	100	94.958	ENSNLEG00000031430	SNRPD1	100	94.958	Nomascus_leucogenys
ENSBTAG00000047266	-	94	96.429	ENSODEG00000005764	SNRPD1	94	96.429	Octodon_degus
ENSBTAG00000047266	-	94	92.857	ENSONIG00000002486	snrpd1	94	92.857	Oreochromis_niloticus
ENSBTAG00000047266	-	82	86.735	ENSOANG00000004638	-	82	86.735	Ornithorhynchus_anatinus
ENSBTAG00000047266	-	94	95.536	ENSOCUG00000014399	-	94	95.536	Oryctolagus_cuniculus
ENSBTAG00000047266	-	98	95.726	ENSOCUG00000023761	-	100	95.726	Oryctolagus_cuniculus
ENSBTAG00000047266	-	88	93.333	ENSORLG00000012516	snrpd1	94	93.333	Oryzias_latipes
ENSBTAG00000047266	-	94	92.857	ENSORLG00020005743	snrpd1	94	92.857	Oryzias_latipes_hni
ENSBTAG00000047266	-	94	92.857	ENSORLG00015013402	snrpd1	94	92.857	Oryzias_latipes_hsok
ENSBTAG00000047266	-	94	92.857	ENSOMEG00000011571	snrpd1	94	92.857	Oryzias_melastigma
ENSBTAG00000047266	-	100	94.118	ENSOGAG00000007833	SNRPD1	100	94.118	Otolemur_garnettii
ENSBTAG00000047266	-	81	95.833	ENSOARG00000003413	-	72	95.833	Ovis_aries
ENSBTAG00000047266	-	94	96.429	ENSPPAG00000042593	SNRPD1	94	96.429	Pan_paniscus
ENSBTAG00000047266	-	94	96.429	ENSPPRG00000002399	SNRPD1	94	96.429	Panthera_pardus
ENSBTAG00000047266	-	94	69.643	ENSPPRG00000005009	-	92	69.643	Panthera_pardus
ENSBTAG00000047266	-	96	97.368	ENSPTIG00000013206	SNRPD1	100	97.368	Panthera_tigris_altaica
ENSBTAG00000047266	-	86	90.196	ENSPTRG00000050159	-	87	90.196	Pan_troglodytes
ENSBTAG00000047266	-	94	96.429	ENSPTRG00000009909	SNRPD1	94	96.429	Pan_troglodytes
ENSBTAG00000047266	-	94	96.429	ENSPANG00000023478	SNRPD1	94	96.429	Papio_anubis
ENSBTAG00000047266	-	94	93.750	ENSPKIG00000003985	SNRPD1	94	93.750	Paramormyrops_kingsleyae
ENSBTAG00000047266	-	88	92.381	ENSPKIG00000021610	snrpd1	94	92.381	Paramormyrops_kingsleyae
ENSBTAG00000047266	-	94	92.857	ENSPMGG00000001862	snrpd1	94	92.857	Periophthalmus_magnuspinnatus
ENSBTAG00000047266	-	98	95.726	ENSPEMG00000014773	-	95	95.726	Peromyscus_maniculatus_bairdii
ENSBTAG00000047266	-	86	80.769	ENSPMAG00000003938	-	85	80.769	Petromyzon_marinus
ENSBTAG00000047266	-	94	97.321	ENSPCIG00000020320	SNRPD1	100	97.321	Phascolarctos_cinereus
ENSBTAG00000047266	-	81	91.667	ENSPFOG00000012448	SNRPD1	85	91.667	Poecilia_formosa
ENSBTAG00000047266	-	81	91.667	ENSPLAG00000006738	snrpd1	85	91.667	Poecilia_latipinna
ENSBTAG00000047266	-	81	91.667	ENSPMEG00000021942	snrpd1	85	91.667	Poecilia_mexicana
ENSBTAG00000047266	-	94	92.857	ENSPREG00000007094	snrpd1	94	92.857	Poecilia_reticulata
ENSBTAG00000047266	-	94	96.429	ENSPPYG00000025874	SNRPD1	94	96.429	Pongo_abelii
ENSBTAG00000047266	-	94	96.429	ENSPCOG00000013327	SNRPD1	94	96.429	Propithecus_coquereli
ENSBTAG00000047266	-	94	96.429	ENSPVAG00000005511	SNRPD1	75	96.429	Pteropus_vampyrus
ENSBTAG00000047266	-	94	92.857	ENSPNAG00000017824	snrpd1	94	92.857	Pygocentrus_nattereri
ENSBTAG00000047266	-	94	96.429	ENSRNOG00000013714	Snrpd1	94	96.429	Rattus_norvegicus
ENSBTAG00000047266	-	100	94.118	ENSRBIG00000022996	SNRPD1	94	96.429	Rhinopithecus_bieti
ENSBTAG00000047266	-	100	94.118	ENSRROG00000027640	SNRPD1	94	96.429	Rhinopithecus_roxellana
ENSBTAG00000047266	-	94	96.429	ENSSBOG00000020998	SNRPD1	94	96.429	Saimiri_boliviensis_boliviensis
ENSBTAG00000047266	-	94	96.429	ENSSHAG00000011791	SNRPD1	94	96.429	Sarcophilus_harrisii
ENSBTAG00000047266	-	94	91.964	ENSSFOG00015022253	-	94	91.964	Scleropages_formosus
ENSBTAG00000047266	-	94	91.964	ENSSFOG00015008809	-	94	91.964	Scleropages_formosus
ENSBTAG00000047266	-	94	91.964	ENSSMAG00000008765	snrpd1	94	92.381	Scophthalmus_maximus
ENSBTAG00000047266	-	92	91.743	ENSSDUG00000010521	snrpd1	92	92.593	Seriola_dumerili
ENSBTAG00000047266	-	94	92.857	ENSSLDG00000011858	snrpd1	94	92.857	Seriola_lalandi_dorsalis
ENSBTAG00000047266	-	56	97.015	ENSSARG00000004271	SNRPD1	100	97.015	Sorex_araneus
ENSBTAG00000047266	-	94	96.429	ENSSPUG00000002824	SNRPD1	94	96.429	Sphenodon_punctatus
ENSBTAG00000047266	-	88	93.333	ENSSPAG00000015229	snrpd1	94	93.333	Stegastes_partitus
ENSBTAG00000047266	-	94	97.321	ENSSSCG00000003701	SNRPD1	100	97.321	Sus_scrofa
ENSBTAG00000047266	-	92	95.455	ENSTGUG00000005095	SNRPD1	92	95.455	Taeniopygia_guttata
ENSBTAG00000047266	-	88	93.333	ENSTRUG00000008977	snrpd1	94	93.333	Takifugu_rubripes
ENSBTAG00000047266	-	81	89.583	ENSTNIG00000001224	snrpd1	92	89.583	Tetraodon_nigroviridis
ENSBTAG00000047266	-	74	97.727	ENSTBEG00000013776	SNRPD1	100	97.727	Tupaia_belangeri
ENSBTAG00000047266	-	97	97.391	ENSTTRG00000002654	SNRPD1	100	97.391	Tursiops_truncatus
ENSBTAG00000047266	-	96	97.368	ENSUAMG00000013431	SNRPD1	97	97.368	Ursus_americanus
ENSBTAG00000047266	-	94	96.429	ENSUMAG00000019740	SNRPD1	94	96.429	Ursus_maritimus
ENSBTAG00000047266	-	94	96.429	ENSVPAG00000010056	SNRPD1	75	96.429	Vicugna_pacos
ENSBTAG00000047266	-	94	97.321	ENSVVUG00000004009	SNRPD1	100	97.321	Vulpes_vulpes
ENSBTAG00000047266	-	94	94.643	ENSXETG00000027354	snrpd1	94	94.643	Xenopus_tropicalis
ENSBTAG00000047266	-	94	92.857	ENSXCOG00000020108	snrpd1	94	92.857	Xiphophorus_couchianus
ENSBTAG00000047266	-	94	92.857	ENSXMAG00000003368	snrpd1	94	92.857	Xiphophorus_maculatus