EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSBTAG00000047874 (Gene tree)
Gene ID: 100299693
Gene Symbol: PRPF38B
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 7501 bases
Position: chr3:34673537-34681037
Accession: 33376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000055594	PRP38	PF03371.15	2.1e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000063261	-	2004	-	ENSBTAP00000055594	543 (aa)	XP_002686205	G3N166

Gene Model

Click here to download ENSBTAG00000047874's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000047874's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000047874	PRPF38B	83	61.587	ENSATEG00000014482	-	59	83.755	Anabas_testudineus
ENSBTAG00000047874	PRPF38B	100	79.745	ENSCAFG00020010992	-	100	88.686	Canis_lupus_dingo
ENSBTAG00000047874	PRPF38B	100	100.000	ENSCHIG00000024357	-	100	100.000	Capra_hircus
ENSBTAG00000047874	PRPF38B	80	93.072	ENSCAPG00000009606	-	98	93.317	Cavia_aperea
ENSBTAG00000047874	PRPF38B	100	94.495	ENSCPOG00000039545	-	100	94.312	Cavia_porcellus
ENSBTAG00000047874	PRPF38B	100	94.161	ENSCLAG00000005801	-	100	94.526	Chinchilla_lanigera
ENSBTAG00000047874	PRPF38B	65	84.136	ENSCHOG00000008972	-	100	86.119	Choloepus_hoffmanni
ENSBTAG00000047874	PRPF38B	100	86.545	ENSCPBG00000028299	-	100	86.654	Chrysemys_picta_bellii
ENSBTAG00000047874	PRPF38B	54	56.357	ENSCSAVG00000009443	-	70	74.737	Ciona_savignyi
ENSBTAG00000047874	PRPF38B	93	60.429	ENSCSEG00000015030	-	60	81.159	Cynoglossus_semilaevis
ENSBTAG00000047874	PRPF38B	83	92.683	ENSETEG00000014690	-	73	95.092	Echinops_telfairi
ENSBTAG00000047874	PRPF38B	57	71.613	ENSELUG00000010390	-	50	78.113	Esox_lucius
ENSBTAG00000047874	PRPF38B	83	86.374	ENSFALG00000002673	-	88	89.183	Ficedula_albicollis
ENSBTAG00000047874	PRPF38B	94	58.476	ENSGMOG00000012080	-	58	81.985	Gadus_morhua
ENSBTAG00000047874	PRPF38B	100	86.751	ENSGALG00000001972	-	100	86.521	Gallus_gallus
ENSBTAG00000047874	PRPF38B	85	61.297	ENSGAFG00000008943	-	59	84.420	Gambusia_affinis
ENSBTAG00000047874	PRPF38B	100	86.909	ENSGAGG00000001563	-	100	87.020	Gopherus_agassizii
ENSBTAG00000047874	PRPF38B	100	95.073	ENSHGLG00000016583	PRPF38B	100	95.255	Heterocephalus_glaber_female
ENSBTAG00000047874	PRPF38B	100	94.891	ENSHGLG00100015525	-	100	95.073	Heterocephalus_glaber_male
ENSBTAG00000047874	PRPF38B	78	63.362	ENSHCOG00000001071	-	61	82.206	Hippocampus_comes
ENSBTAG00000047874	PRPF38B	81	61.407	ENSKMAG00000005540	-	58	82.117	Kryptolebias_marmoratus
ENSBTAG00000047874	PRPF38B	97	73.732	ENSLACG00000015511	-	51	90.975	Latimeria_chalumnae
ENSBTAG00000047874	PRPF38B	100	87.132	ENSMOCG00000020285	-	100	93.199	Microtus_ochrogaster
ENSBTAG00000047874	PRPF38B	76	62.754	ENSMMOG00000011639	-	60	82.310	Mola_mola
ENSBTAG00000047874	PRPF38B	60	94.562	ENSMODG00000002350	-	100	93.078	Monodelphis_domestica
ENSBTAG00000047874	PRPF38B	93	60.886	ENSMALG00000019479	-	59	84.116	Monopterus_albus
ENSBTAG00000047874	PRPF38B	80	93.801	ENSOPRG00000013543	-	81	93.801	Ochotona_princeps
ENSBTAG00000047874	PRPF38B	82	65.096	ENSONIG00000010129	-	60	83.755	Oreochromis_niloticus
ENSBTAG00000047874	PRPF38B	90	80.000	ENSOANG00000007343	-	95	91.131	Ornithorhynchus_anatinus
ENSBTAG00000047874	PRPF38B	85	63.445	ENSORLG00000015621	-	88	91.558	Oryzias_latipes
ENSBTAG00000047874	PRPF38B	85	63.235	ENSORLG00020016276	-	88	91.558	Oryzias_latipes_hni
ENSBTAG00000047874	PRPF38B	93	60.742	ENSORLG00015016270	-	74	91.558	Oryzias_latipes_hsok
ENSBTAG00000047874	PRPF38B	85	64.076	ENSOMEG00000022050	-	91	91.026	Oryzias_melastigma
ENSBTAG00000047874	PRPF38B	100	95.255	ENSOGAG00000027048	-	100	95.620	Otolemur_garnettii
ENSBTAG00000047874	PRPF38B	100	97.790	ENSOARG00000018899	-	100	97.790	Ovis_aries
ENSBTAG00000047874	PRPF38B	97	62.756	ENSPKIG00000004815	-	57	81.908	Paramormyrops_kingsleyae
ENSBTAG00000047874	PRPF38B	94	65.091	ENSPKIG00000017291	-	52	78.361	Paramormyrops_kingsleyae
ENSBTAG00000047874	PRPF38B	100	85.818	ENSPSIG00000016569	-	100	86.654	Pelodiscus_sinensis
ENSBTAG00000047874	PRPF38B	85	61.925	ENSPFOG00000004025	-	81	92.208	Poecilia_formosa
ENSBTAG00000047874	PRPF38B	85	61.925	ENSPLAG00000019842	-	59	84.783	Poecilia_latipinna
ENSBTAG00000047874	PRPF38B	85	61.667	ENSPMEG00000004807	-	58	84.783	Poecilia_mexicana
ENSBTAG00000047874	PRPF38B	85	61.088	ENSPREG00000015599	-	83	92.208	Poecilia_reticulata
ENSBTAG00000047874	PRPF38B	51	84.286	ENSPNAG00000017484	-	54	84.173	Pygocentrus_nattereri
ENSBTAG00000047874	PRPF38B	100	91.193	ENSRNOG00000020438	Prpf38b	100	93.028	Rattus_norvegicus
ENSBTAG00000047874	PRPF38B	94	62.791	ENSSFOG00015011251	-	79	97.351	Scleropages_formosus
ENSBTAG00000047874	PRPF38B	85	62.398	ENSSLDG00000023487	-	83	91.558	Seriola_lalandi_dorsalis
ENSBTAG00000047874	PRPF38B	100	84.783	ENSSPUG00000017742	-	100	84.601	Sphenodon_punctatus
ENSBTAG00000047874	PRPF38B	78	62.128	ENSTRUG00000011765	-	60	83.094	Takifugu_rubripes
ENSBTAG00000047874	PRPF38B	79	59.594	ENSTNIG00000015299	-	69	81.915	Tetraodon_nigroviridis
ENSBTAG00000047874	PRPF38B	94	91.389	ENSTBEG00000007504	-	100	91.389	Tupaia_belangeri
ENSBTAG00000047874	PRPF38B	100	97.610	ENSTTRG00000006479	-	100	97.610	Tursiops_truncatus
ENSBTAG00000047874	PRPF38B	99	88.376	ENSVPAG00000005541	-	99	88.930	Vicugna_pacos
ENSBTAG00000047874	PRPF38B	94	74.563	ENSXETG00000005260	prpf38b	58	84.918	Xenopus_tropicalis
ENSBTAG00000047874	PRPF38B	85	60.780	ENSXCOG00000008329	-	59	84.420	Xiphophorus_couchianus
ENSBTAG00000047874	PRPF38B	85	61.191	ENSXMAG00000023831	-	59	84.420	Xiphophorus_maculatus