EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000050012 (Gene tree)
Gene ID: 107131530
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein F-like
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 246 bases
Position: chr19:44040466-44040711
Accession: 107131530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000063758	LSM	PF01423.22	3.8e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000086074	-	246	-	ENSBTAP00000063758	81 (aa)	XP_015314385	UPI000760AB30

Gene Model

Click here to download ENSBTAG00000050012's gene model file

Pathways

Pathway ID	Pathway Name	Source
bta03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000050012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000050012	-	91	44.595	ENSBTAG00000014060	LSM6	91	45.205
ENSBTAG00000050012	-	90	46.575	ENSBTAG00000052085	-	91	46.575
ENSBTAG00000050012	-	93	93.333	ENSBTAG00000016271	SNRPF	91	93.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000050012	-	93	93.333	ENSG00000139343	SNRPF	91	93.590	Homo_sapiens
ENSBTAG00000050012	-	91	90.541	ENSAPOG00000003377	snrpf	60	90.909	Acanthochromis_polyacanthus
ENSBTAG00000050012	-	91	93.243	ENSAMEG00000002166	-	91	93.506	Ailuropoda_melanoleuca
ENSBTAG00000050012	-	94	80.263	ENSAMEG00000018718	-	91	80.769	Ailuropoda_melanoleuca
ENSBTAG00000050012	-	90	90.411	ENSACIG00000013216	snrpf	89	90.789	Amphilophus_citrinellus
ENSBTAG00000050012	-	90	90.411	ENSAOCG00000015108	snrpf	89	90.789	Amphiprion_ocellaris
ENSBTAG00000050012	-	90	90.411	ENSAPEG00000022022	snrpf	89	90.789	Amphiprion_percula
ENSBTAG00000050012	-	90	90.411	ENSATEG00000022625	snrpf	82	90.789	Anabas_testudineus
ENSBTAG00000050012	-	91	91.892	ENSACAG00000014073	SNRPF	89	92.208	Anolis_carolinensis
ENSBTAG00000050012	-	88	85.915	ENSANAG00000020297	-	68	86.486	Aotus_nancymaae
ENSBTAG00000050012	-	93	93.333	ENSANAG00000032845	SNRPF	91	93.590	Aotus_nancymaae
ENSBTAG00000050012	-	93	65.333	ENSANAG00000025860	-	89	66.667	Aotus_nancymaae
ENSBTAG00000050012	-	90	90.411	ENSACLG00000016066	snrpf	89	90.789	Astatotilapia_calliptera
ENSBTAG00000050012	-	93	90.667	ENSAMXG00000007421	snrpf	91	91.026	Astyanax_mexicanus
ENSBTAG00000050012	-	93	69.333	WBGene00004918	snr-5	88	69.333	Caenorhabditis_elegans
ENSBTAG00000050012	-	93	93.333	ENSCJAG00000002705	-	91	93.590	Callithrix_jacchus
ENSBTAG00000050012	-	93	93.333	ENSCAFG00000006395	-	70	93.590	Canis_familiaris
ENSBTAG00000050012	-	90	84.932	ENSCAFG00000031151	-	91	85.897	Canis_familiaris
ENSBTAG00000050012	-	90	84.932	ENSCAFG00020010823	-	91	85.897	Canis_lupus_dingo
ENSBTAG00000050012	-	94	84.615	ENSCAFG00020013161	-	83	84.615	Canis_lupus_dingo
ENSBTAG00000050012	-	93	80.000	ENSTSYG00000030635	-	90	80.769	Carlito_syrichta
ENSBTAG00000050012	-	94	88.158	ENSTSYG00000031636	-	64	88.158	Carlito_syrichta
ENSBTAG00000050012	-	93	86.842	ENSTSYG00000036502	-	91	87.342	Carlito_syrichta
ENSBTAG00000050012	-	91	93.243	ENSCAPG00000007242	SNRPF	91	93.506	Cavia_aperea
ENSBTAG00000050012	-	93	93.333	ENSCPOG00000013898	SNRPF	91	93.590	Cavia_porcellus
ENSBTAG00000050012	-	99	82.500	ENSCCAG00000033627	-	63	82.500	Cebus_capucinus
ENSBTAG00000050012	-	93	93.333	ENSCCAG00000037378	-	91	93.590	Cebus_capucinus
ENSBTAG00000050012	-	90	93.151	ENSCCAG00000017356	-	92	92.405	Cebus_capucinus
ENSBTAG00000050012	-	93	93.333	ENSCLAG00000007200	SNRPF	91	93.590	Chinchilla_lanigera
ENSBTAG00000050012	-	93	93.333	ENSCSAG00000003602	-	63	93.590	Chlorocebus_sabaeus
ENSBTAG00000050012	-	79	93.750	ENSCHOG00000009392	SNRPF	100	93.750	Choloepus_hoffmanni
ENSBTAG00000050012	-	96	85.897	ENSCPBG00000026463	-	91	85.897	Chrysemys_picta_bellii
ENSBTAG00000050012	-	99	87.500	ENSCPBG00000024287	-	65	87.500	Chrysemys_picta_bellii
ENSBTAG00000050012	-	100	83.951	ENSCPBG00000001985	-	96	83.951	Chrysemys_picta_bellii
ENSBTAG00000050012	-	93	85.333	ENSCPBG00000006227	-	91	85.897	Chrysemys_picta_bellii
ENSBTAG00000050012	-	95	81.818	ENSCSAVG00000007498	-	88	81.818	Ciona_savignyi
ENSBTAG00000050012	-	93	85.333	ENSCGRG00001008965	-	61	85.897	Cricetulus_griseus_chok1gshd
ENSBTAG00000050012	-	93	93.333	ENSCGRG00001017100	-	91	93.590	Cricetulus_griseus_chok1gshd
ENSBTAG00000050012	-	96	85.897	ENSCGRG00000018878	-	97	85.897	Cricetulus_griseus_crigri
ENSBTAG00000050012	-	93	93.333	ENSCGRG00000000336	-	91	93.590	Cricetulus_griseus_crigri
ENSBTAG00000050012	-	93	89.333	ENSCSEG00000004748	snrpf	91	89.744	Cynoglossus_semilaevis
ENSBTAG00000050012	-	91	90.541	ENSCVAG00000000397	snrpf	61	90.909	Cyprinodon_variegatus
ENSBTAG00000050012	-	93	88.312	ENSDARG00000105037	snrpf	91	88.750	Danio_rerio
ENSBTAG00000050012	-	93	92.000	ENSDNOG00000048989	-	70	92.308	Dasypus_novemcinctus
ENSBTAG00000050012	-	93	80.000	ENSDNOG00000049373	-	68	80.769	Dasypus_novemcinctus
ENSBTAG00000050012	-	93	93.333	ENSDNOG00000043775	-	50	93.590	Dasypus_novemcinctus
ENSBTAG00000050012	-	93	78.667	ENSDORG00000029740	-	90	79.487	Dipodomys_ordii
ENSBTAG00000050012	-	89	83.333	ENSDORG00000025351	-	100	83.333	Dipodomys_ordii
ENSBTAG00000050012	-	94	73.684	FBgn0000426	SmF	86	73.684	Drosophila_melanogaster
ENSBTAG00000050012	-	93	93.333	ENSETEG00000001558	-	91	93.590	Echinops_telfairi
ENSBTAG00000050012	-	90	74.324	ENSEBUG00000001793	-	80	74.324	Eptatretus_burgeri
ENSBTAG00000050012	-	93	93.333	ENSECAG00000019817	SNRPF	63	93.590	Equus_caballus
ENSBTAG00000050012	-	91	93.243	ENSEEUG00000013509	SNRPF	91	93.506	Erinaceus_europaeus
ENSBTAG00000050012	-	93	89.333	ENSELUG00000003121	RUXF	91	89.744	Esox_lucius
ENSBTAG00000050012	-	93	88.000	ENSELUG00000007737	RUXF	90	88.462	Esox_lucius
ENSBTAG00000050012	-	93	72.000	ENSFCAG00000021942	-	90	73.077	Felis_catus
ENSBTAG00000050012	-	93	72.000	ENSFCAG00000031148	-	72	73.077	Felis_catus
ENSBTAG00000050012	-	93	93.333	ENSFCAG00000029966	-	91	93.590	Felis_catus
ENSBTAG00000050012	-	91	93.243	ENSFALG00000010799	SNRPF	90	93.506	Ficedula_albicollis
ENSBTAG00000050012	-	93	93.333	ENSFDAG00000002831	-	91	93.590	Fukomys_damarensis
ENSBTAG00000050012	-	91	90.541	ENSFHEG00000003240	snrpf	68	90.909	Fundulus_heteroclitus
ENSBTAG00000050012	-	91	90.541	ENSGMOG00000007741	snrpf	91	90.909	Gadus_morhua
ENSBTAG00000050012	-	93	93.333	ENSGALG00000011409	SNRPF	91	93.590	Gallus_gallus
ENSBTAG00000050012	-	90	90.411	ENSGAFG00000016187	snrpf	87	90.789	Gambusia_affinis
ENSBTAG00000050012	-	91	90.541	ENSGACG00000020055	snrpf	91	90.909	Gasterosteus_aculeatus
ENSBTAG00000050012	-	83	89.552	ENSGAGG00000012945	-	74	86.420	Gopherus_agassizii
ENSBTAG00000050012	-	88	88.732	ENSGAGG00000022991	-	84	88.732	Gopherus_agassizii
ENSBTAG00000050012	-	64	88.462	ENSGAGG00000011163	-	91	88.462	Gopherus_agassizii
ENSBTAG00000050012	-	85	82.609	ENSGAGG00000014132	-	94	75.641	Gopherus_agassizii
ENSBTAG00000050012	-	77	91.935	ENSGAGG00000020974	-	52	91.935	Gopherus_agassizii
ENSBTAG00000050012	-	93	73.333	ENSGGOG00000039936	-	87	74.359	Gorilla_gorilla
ENSBTAG00000050012	-	93	93.333	ENSGGOG00000001127	-	91	93.590	Gorilla_gorilla
ENSBTAG00000050012	-	100	69.512	ENSGGOG00000039564	-	100	69.512	Gorilla_gorilla
ENSBTAG00000050012	-	93	93.333	ENSHGLG00000009108	SNRPF	91	93.590	Heterocephalus_glaber_female
ENSBTAG00000050012	-	93	92.000	ENSHGLG00000021172	-	91	92.308	Heterocephalus_glaber_female
ENSBTAG00000050012	-	91	93.243	ENSHGLG00100008103	-	91	93.506	Heterocephalus_glaber_male
ENSBTAG00000050012	-	93	92.000	ENSHGLG00100019596	-	91	92.308	Heterocephalus_glaber_male
ENSBTAG00000050012	-	78	78.571	ENSHCOG00000018663	snrpf	55	78.571	Hippocampus_comes
ENSBTAG00000050012	-	93	90.667	ENSIPUG00000018994	snrpf	91	91.026	Ictalurus_punctatus
ENSBTAG00000050012	-	93	93.333	ENSSTOG00000010434	-	91	93.590	Ictidomys_tridecemlineatus
ENSBTAG00000050012	-	100	77.778	ENSJJAG00000010502	-	96	77.778	Jaculus_jaculus
ENSBTAG00000050012	-	77	88.710	ENSJJAG00000004828	-	95	88.710	Jaculus_jaculus
ENSBTAG00000050012	-	93	93.333	ENSJJAG00000011272	-	91	93.590	Jaculus_jaculus
ENSBTAG00000050012	-	100	75.309	ENSJJAG00000004558	-	96	75.309	Jaculus_jaculus
ENSBTAG00000050012	-	93	89.333	ENSKMAG00000013566	snrpf	91	89.744	Kryptolebias_marmoratus
ENSBTAG00000050012	-	93	89.333	ENSLBEG00000008800	snrpf	91	89.744	Labrus_bergylta
ENSBTAG00000050012	-	93	92.000	ENSLACG00000002456	-	67	92.308	Latimeria_chalumnae
ENSBTAG00000050012	-	93	89.333	ENSLOCG00000015744	snrpf	91	89.744	Lepisosteus_oculatus
ENSBTAG00000050012	-	91	93.243	ENSLAFG00000017426	SNRPF	90	93.506	Loxodonta_africana
ENSBTAG00000050012	-	90	89.041	ENSMAMG00000016593	snrpf	89	89.474	Mastacembelus_armatus
ENSBTAG00000050012	-	90	90.411	ENSMZEG00005014701	snrpf	89	90.789	Maylandia_zebra
ENSBTAG00000050012	-	90	93.151	ENSMGAG00000011453	-	68	93.421	Meleagris_gallopavo
ENSBTAG00000050012	-	75	95.082	ENSMAUG00000019737	-	86	95.312	Mesocricetus_auratus
ENSBTAG00000050012	-	65	90.566	ENSMAUG00000010289	-	70	90.566	Mesocricetus_auratus
ENSBTAG00000050012	-	75	95.082	ENSMAUG00000016909	-	86	95.312	Mesocricetus_auratus
ENSBTAG00000050012	-	93	88.000	ENSMAUG00000008799	-	91	88.462	Mesocricetus_auratus
ENSBTAG00000050012	-	93	93.333	ENSMICG00000012153	-	91	93.590	Microcebus_murinus
ENSBTAG00000050012	-	93	86.667	ENSMICG00000030494	-	62	87.179	Microcebus_murinus
ENSBTAG00000050012	-	93	93.333	ENSMOCG00000020437	Snrpf	91	93.590	Microtus_ochrogaster
ENSBTAG00000050012	-	93	78.667	ENSMOCG00000022166	-	86	79.487	Microtus_ochrogaster
ENSBTAG00000050012	-	84	77.941	ENSMOCG00000020220	-	91	78.873	Microtus_ochrogaster
ENSBTAG00000050012	-	91	90.541	ENSMMOG00000007127	snrpf	90	90.909	Mola_mola
ENSBTAG00000050012	-	93	93.333	ENSMODG00000008091	SNRPF	68	93.590	Monodelphis_domestica
ENSBTAG00000050012	-	90	90.411	ENSMALG00000012328	snrpf	89	90.789	Monopterus_albus
ENSBTAG00000050012	-	93	93.333	MGP_CAROLIEiJ_G0015735	-	91	93.590	Mus_caroli
ENSBTAG00000050012	-	93	93.333	ENSMUSG00000020018	Snrpf	91	93.590	Mus_musculus
ENSBTAG00000050012	-	93	93.333	MGP_PahariEiJ_G0031350	Snrpf	91	93.590	Mus_pahari
ENSBTAG00000050012	-	93	93.333	MGP_SPRETEiJ_G0016553	Snrpf	91	93.590	Mus_spretus
ENSBTAG00000050012	-	93	93.333	ENSMPUG00000007176	-	70	93.590	Mustela_putorius_furo
ENSBTAG00000050012	-	93	93.333	ENSMLUG00000027932	-	74	93.590	Myotis_lucifugus
ENSBTAG00000050012	-	93	93.333	ENSMLUG00000029201	-	74	93.590	Myotis_lucifugus
ENSBTAG00000050012	-	93	72.000	ENSMLUG00000026269	-	74	73.077	Myotis_lucifugus
ENSBTAG00000050012	-	91	93.243	ENSMLUG00000013577	-	91	93.506	Myotis_lucifugus
ENSBTAG00000050012	-	93	93.333	ENSMLUG00000026149	-	74	93.590	Myotis_lucifugus
ENSBTAG00000050012	-	84	80.882	ENSNGAG00000005851	-	80	80.882	Nannospalax_galili
ENSBTAG00000050012	-	93	93.333	ENSNGAG00000024292	-	91	93.590	Nannospalax_galili
ENSBTAG00000050012	-	91	90.541	ENSNBRG00000011682	snrpf	79	90.909	Neolamprologus_brichardi
ENSBTAG00000050012	-	91	66.216	ENSMEUG00000000671	SNRPF	91	67.532	Notamacropus_eugenii
ENSBTAG00000050012	-	93	93.333	ENSODEG00000010328	-	91	93.590	Octodon_degus
ENSBTAG00000050012	-	93	92.000	ENSOCUG00000010925	SNRPF	69	92.308	Oryctolagus_cuniculus
ENSBTAG00000050012	-	91	90.541	ENSORLG00020008216	snrpf	90	90.909	Oryzias_latipes_hni
ENSBTAG00000050012	-	91	90.541	ENSORLG00015007418	snrpf	90	90.909	Oryzias_latipes_hsok
ENSBTAG00000050012	-	90	90.411	ENSOMEG00000003018	snrpf	89	90.789	Oryzias_melastigma
ENSBTAG00000050012	-	93	92.000	ENSOGAG00000030323	-	91	92.308	Otolemur_garnettii
ENSBTAG00000050012	-	93	93.333	ENSOARG00000011853	-	68	93.590	Ovis_aries
ENSBTAG00000050012	-	93	73.333	ENSPPAG00000037544	-	87	74.359	Pan_paniscus
ENSBTAG00000050012	-	100	69.512	ENSPPAG00000037479	-	100	69.512	Pan_paniscus
ENSBTAG00000050012	-	93	93.333	ENSPPRG00000005875	-	91	93.590	Panthera_pardus
ENSBTAG00000050012	-	96	73.077	ENSPPRG00000007449	-	80	73.077	Panthera_pardus
ENSBTAG00000050012	-	93	93.333	ENSPTIG00000007520	SNRPF	91	93.590	Panthera_tigris_altaica
ENSBTAG00000050012	-	93	73.333	ENSPTIG00000005117	-	93	74.359	Panthera_tigris_altaica
ENSBTAG00000050012	-	93	73.333	ENSPTRG00000043814	-	87	74.359	Pan_troglodytes
ENSBTAG00000050012	-	100	69.512	ENSPTRG00000047717	-	100	69.512	Pan_troglodytes
ENSBTAG00000050012	-	91	90.541	ENSPKIG00000014784	snrpf	85	90.909	Paramormyrops_kingsleyae
ENSBTAG00000050012	-	91	93.243	ENSPSIG00000016462	SNRPF	90	93.506	Pelodiscus_sinensis
ENSBTAG00000050012	-	91	90.541	ENSPMGG00000023548	snrpf	90	90.909	Periophthalmus_magnuspinnatus
ENSBTAG00000050012	-	93	93.333	ENSPEMG00000023326	Snrpf	91	93.590	Peromyscus_maniculatus_bairdii
ENSBTAG00000050012	-	90	90.411	ENSPLAG00000023932	snrpf	89	90.789	Poecilia_latipinna
ENSBTAG00000050012	-	90	90.411	ENSPMEG00000003377	snrpf	89	90.789	Poecilia_mexicana
ENSBTAG00000050012	-	90	90.411	ENSPREG00000022635	snrpf	87	90.789	Poecilia_reticulata
ENSBTAG00000050012	-	93	93.333	ENSPPYG00000004847	-	91	93.590	Pongo_abelii
ENSBTAG00000050012	-	93	93.333	ENSPCOG00000023833	-	91	93.590	Propithecus_coquereli
ENSBTAG00000050012	-	93	93.333	ENSPVAG00000009036	SNRPF	91	93.590	Pteropus_vampyrus
ENSBTAG00000050012	-	90	90.411	ENSPNYG00000021712	snrpf	89	90.789	Pundamilia_nyererei
ENSBTAG00000050012	-	90	90.411	ENSPNAG00000019117	snrpf	89	90.789	Pygocentrus_nattereri
ENSBTAG00000050012	-	93	93.333	ENSRNOG00000005556	Snrpf	91	93.590	Rattus_norvegicus
ENSBTAG00000050012	-	93	90.667	ENSRBIG00000030414	-	91	91.026	Rhinopithecus_bieti
ENSBTAG00000050012	-	93	90.667	ENSRROG00000021975	-	91	91.026	Rhinopithecus_roxellana
ENSBTAG00000050012	-	86	52.113	YPR182W	SMX3	83	52.113	Saccharomyces_cerevisiae
ENSBTAG00000050012	-	93	73.077	ENSSBOG00000027638	-	91	74.074	Saimiri_boliviensis_boliviensis
ENSBTAG00000050012	-	93	93.333	ENSSBOG00000036179	-	91	93.590	Saimiri_boliviensis_boliviensis
ENSBTAG00000050012	-	93	93.333	ENSSBOG00000012868	-	91	92.308	Saimiri_boliviensis_boliviensis
ENSBTAG00000050012	-	93	78.667	ENSSBOG00000032297	-	90	78.205	Saimiri_boliviensis_boliviensis
ENSBTAG00000050012	-	91	93.243	ENSSHAG00000012294	SNRPF	69	93.506	Sarcophilus_harrisii
ENSBTAG00000050012	-	79	89.062	ENSSFOG00015021523	snrpf	96	89.062	Scleropages_formosus
ENSBTAG00000050012	-	93	89.333	ENSSMAG00000005533	snrpf	90	89.744	Scophthalmus_maximus
ENSBTAG00000050012	-	80	89.231	ENSSDUG00000016283	snrpf	77	89.231	Seriola_dumerili
ENSBTAG00000050012	-	95	71.429	ENSSLDG00000003885	-	94	71.429	Seriola_lalandi_dorsalis
ENSBTAG00000050012	-	93	89.333	ENSSLDG00000005119	snrpf	91	89.744	Seriola_lalandi_dorsalis
ENSBTAG00000050012	-	90	93.151	ENSSPUG00000014590	-	89	93.421	Sphenodon_punctatus
ENSBTAG00000050012	-	91	90.541	ENSSPAG00000003283	snrpf	88	90.909	Stegastes_partitus
ENSBTAG00000050012	-	93	93.333	ENSSSCG00000000895	SNRPF	91	93.590	Sus_scrofa
ENSBTAG00000050012	-	72	89.655	ENSTRUG00000014956	snrpf	88	90.164	Takifugu_rubripes
ENSBTAG00000050012	-	93	89.333	ENSTNIG00000012672	snrpf	91	89.744	Tetraodon_nigroviridis
ENSBTAG00000050012	-	93	66.667	ENSTTRG00000006070	SNRPF	91	67.949	Tursiops_truncatus
ENSBTAG00000050012	-	93	93.333	ENSUAMG00000008176	-	91	93.590	Ursus_americanus
ENSBTAG00000050012	-	96	82.051	ENSUAMG00000001101	-	92	82.051	Ursus_americanus
ENSBTAG00000050012	-	93	82.667	ENSUMAG00000006177	-	92	82.051	Ursus_maritimus
ENSBTAG00000050012	-	93	93.333	ENSUMAG00000003528	-	91	93.590	Ursus_maritimus
ENSBTAG00000050012	-	93	93.333	ENSVPAG00000008712	-	91	93.590	Vicugna_pacos
ENSBTAG00000050012	-	96	85.897	ENSVVUG00000023821	-	100	85.897	Vulpes_vulpes
ENSBTAG00000050012	-	91	69.737	ENSXETG00000021630	snrpf	91	70.886	Xenopus_tropicalis
ENSBTAG00000050012	-	90	90.411	ENSXCOG00000013860	snrpf	87	90.789	Xiphophorus_couchianus
ENSBTAG00000050012	-	90	90.411	ENSXMAG00000015448	snrpf	89	90.789	Xiphophorus_maculatus