EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000052708 (Gene tree)
Gene ID: 100336754
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Minus strand
Length: 68439 bases
Position: chr16:55297385-55365823
Accession: 100336754
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000064320	zf-CCCH	PF00642.24	0.00026	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000082598	RC3H1-201	3800	-	ENSBTAP00000064320	1124 (aa)	XP_024832627	UPI000D534847

Gene Model

Click here to download ENSBTAG00000052708's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000052708's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000052708	RC3H1	91	54.757	ENSBTAG00000023867	RC3H2	87	54.639

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000052708	RC3H1	100	96.533	ENSG00000135870	RC3H1	100	96.533	Homo_sapiens
ENSBTAG00000052708	RC3H1	100	95.499	ENSAMEG00000015657	RC3H1	100	95.499	Ailuropoda_melanoleuca
ENSBTAG00000052708	RC3H1	100	87.271	ENSAPLG00000005341	RC3H1	100	86.736	Anas_platyrhynchos
ENSBTAG00000052708	RC3H1	100	84.031	ENSACAG00000015271	RC3H1	100	83.654	Anolis_carolinensis
ENSBTAG00000052708	RC3H1	100	95.852	ENSANAG00000036716	RC3H1	100	95.852	Aotus_nancymaae
ENSBTAG00000052708	RC3H1	100	95.499	ENSCJAG00000009106	RC3H1	100	95.499	Callithrix_jacchus
ENSBTAG00000052708	RC3H1	100	95.852	ENSCAFG00000014434	RC3H1	100	95.852	Canis_familiaris
ENSBTAG00000052708	RC3H1	100	95.767	ENSCAFG00020017112	RC3H1	99	97.978	Canis_lupus_dingo
ENSBTAG00000052708	RC3H1	100	98.754	ENSCHIG00000002873	RC3H1	100	98.754	Capra_hircus
ENSBTAG00000052708	RC3H1	99	93.993	ENSTSYG00000003913	RC3H1	99	93.993	Carlito_syrichta
ENSBTAG00000052708	RC3H1	100	90.564	ENSCPOG00000004349	RC3H1	100	90.300	Cavia_porcellus
ENSBTAG00000052708	RC3H1	100	93.557	ENSCCAG00000025652	RC3H1	100	93.557	Cebus_capucinus
ENSBTAG00000052708	RC3H1	100	96.028	ENSCATG00000033497	RC3H1	100	96.028	Cercocebus_atys
ENSBTAG00000052708	RC3H1	100	93.651	ENSCLAG00000011267	RC3H1	100	93.651	Chinchilla_lanigera
ENSBTAG00000052708	RC3H1	96	95.948	ENSCSAG00000011823	RC3H1	85	95.948	Chlorocebus_sabaeus
ENSBTAG00000052708	RC3H1	93	96.522	ENSCPBG00000014670	RC3H1	100	88.246	Chrysemys_picta_bellii
ENSBTAG00000052708	RC3H1	100	96.032	ENSCANG00000032120	RC3H1	100	96.032	Colobus_angolensis_palliatus
ENSBTAG00000052708	RC3H1	100	93.027	ENSCGRG00001020812	Rc3h1	100	92.586	Cricetulus_griseus_chok1gshd
ENSBTAG00000052708	RC3H1	100	93.027	ENSCGRG00000011952	Rc3h1	100	92.586	Cricetulus_griseus_crigri
ENSBTAG00000052708	RC3H1	55	94.032	ENSDNOG00000011494	RC3H1	99	94.032	Dasypus_novemcinctus
ENSBTAG00000052708	RC3H1	100	94.263	ENSDORG00000004855	Rc3h1	100	94.263	Dipodomys_ordii
ENSBTAG00000052708	RC3H1	82	95.808	ENSETEG00000012064	RC3H1	87	95.808	Echinops_telfairi
ENSBTAG00000052708	RC3H1	100	95.907	ENSEASG00005017000	RC3H1	100	95.907	Equus_asinus_asinus
ENSBTAG00000052708	RC3H1	100	95.730	ENSECAG00000021208	RC3H1	100	95.730	Equus_caballus
ENSBTAG00000052708	RC3H1	83	94.958	ENSEEUG00000014861	RC3H1	93	82.375	Erinaceus_europaeus
ENSBTAG00000052708	RC3H1	100	96.293	ENSFCAG00000014924	RC3H1	100	96.293	Felis_catus
ENSBTAG00000052708	RC3H1	100	86.463	ENSFALG00000002947	RC3H1	100	85.315	Ficedula_albicollis
ENSBTAG00000052708	RC3H1	100	94.356	ENSFDAG00000013303	RC3H1	100	94.356	Fukomys_damarensis
ENSBTAG00000052708	RC3H1	100	87.721	ENSGALG00000004587	RC3H1	100	87.179	Gallus_gallus
ENSBTAG00000052708	RC3H1	93	96.739	ENSGAGG00000018194	RC3H1	100	88.064	Gopherus_agassizii
ENSBTAG00000052708	RC3H1	100	89.006	ENSGGOG00000005735	RC3H1	100	89.006	Gorilla_gorilla
ENSBTAG00000052708	RC3H1	88	88.227	ENSHGLG00000004183	-	99	88.179	Heterocephalus_glaber_female
ENSBTAG00000052708	RC3H1	100	93.651	ENSHGLG00100008577	RC3H1	100	93.651	Heterocephalus_glaber_male
ENSBTAG00000052708	RC3H1	100	94.709	ENSSTOG00000016033	RC3H1	100	94.709	Ictidomys_tridecemlineatus
ENSBTAG00000052708	RC3H1	100	93.557	ENSJJAG00000018915	Rc3h1	100	93.292	Jaculus_jaculus
ENSBTAG00000052708	RC3H1	100	73.977	ENSLACG00000016186	RC3H1	100	77.020	Latimeria_chalumnae
ENSBTAG00000052708	RC3H1	97	95.719	ENSLAFG00000004367	RC3H1	100	95.719	Loxodonta_africana
ENSBTAG00000052708	RC3H1	100	95.940	ENSMFAG00000033725	RC3H1	100	95.940	Macaca_fascicularis
ENSBTAG00000052708	RC3H1	100	96.711	ENSMMUG00000000630	RC3H1	100	96.711	Macaca_mulatta
ENSBTAG00000052708	RC3H1	100	96.028	ENSMNEG00000035968	RC3H1	100	96.028	Macaca_nemestrina
ENSBTAG00000052708	RC3H1	100	95.940	ENSMLEG00000037455	RC3H1	100	95.940	Mandrillus_leucophaeus
ENSBTAG00000052708	RC3H1	100	85.854	ENSMAUG00000020864	Rc3h1	100	85.409	Mesocricetus_auratus
ENSBTAG00000052708	RC3H1	100	95.940	ENSMICG00000003000	RC3H1	100	95.940	Microcebus_murinus
ENSBTAG00000052708	RC3H1	93	91.572	ENSMOCG00000016587	Rc3h1	98	91.193	Microtus_ochrogaster
ENSBTAG00000052708	RC3H1	100	91.270	ENSMODG00000004289	RC3H1	100	91.358	Monodelphis_domestica
ENSBTAG00000052708	RC3H1	100	92.233	MGP_CAROLIEiJ_G0014756	Rc3h1	100	91.792	Mus_caroli
ENSBTAG00000052708	RC3H1	100	92.794	ENSMUSG00000040423	Rc3h1	100	92.349	Mus_musculus
ENSBTAG00000052708	RC3H1	100	91.968	MGP_PahariEiJ_G0027992	Rc3h1	100	91.527	Mus_pahari
ENSBTAG00000052708	RC3H1	100	92.616	MGP_SPRETEiJ_G0015563	Rc3h1	100	92.171	Mus_spretus
ENSBTAG00000052708	RC3H1	100	95.238	ENSMPUG00000004747	RC3H1	100	94.881	Mustela_putorius_furo
ENSBTAG00000052708	RC3H1	100	93.998	ENSMLUG00000011127	RC3H1	100	93.998	Myotis_lucifugus
ENSBTAG00000052708	RC3H1	100	94.263	ENSNGAG00000011135	Rc3h1	100	93.822	Nannospalax_galili
ENSBTAG00000052708	RC3H1	100	95.763	ENSNLEG00000015327	RC3H1	100	95.763	Nomascus_leucogenys
ENSBTAG00000052708	RC3H1	99	81.560	ENSOPRG00000013068	RC3H1	99	81.560	Ochotona_princeps
ENSBTAG00000052708	RC3H1	100	93.204	ENSODEG00000014185	RC3H1	100	93.386	Octodon_degus
ENSBTAG00000052708	RC3H1	100	90.306	ENSOANG00000000924	RC3H1	100	90.218	Ornithorhynchus_anatinus
ENSBTAG00000052708	RC3H1	99	94.808	ENSOCUG00000004930	RC3H1	98	94.808	Oryctolagus_cuniculus
ENSBTAG00000052708	RC3H1	100	88.811	ENSOGAG00000004044	RC3H1	100	88.811	Otolemur_garnettii
ENSBTAG00000052708	RC3H1	100	97.456	ENSOARG00000013011	RC3H1	100	97.456	Ovis_aries
ENSBTAG00000052708	RC3H1	100	95.855	ENSPPAG00000039253	RC3H1	100	95.855	Pan_paniscus
ENSBTAG00000052708	RC3H1	100	96.975	ENSPPRG00000009007	RC3H1	100	96.975	Panthera_pardus
ENSBTAG00000052708	RC3H1	100	95.782	ENSPTIG00000015326	RC3H1	100	95.782	Panthera_tigris_altaica
ENSBTAG00000052708	RC3H1	100	95.855	ENSPTRG00000001702	RC3H1	100	95.855	Pan_troglodytes
ENSBTAG00000052708	RC3H1	100	95.940	ENSPANG00000008886	RC3H1	100	95.940	Papio_anubis
ENSBTAG00000052708	RC3H1	100	89.311	ENSPSIG00000016181	RC3H1	100	89.488	Pelodiscus_sinensis
ENSBTAG00000052708	RC3H1	100	92.586	ENSPEMG00000011966	Rc3h1	100	92.056	Peromyscus_maniculatus_bairdii
ENSBTAG00000052708	RC3H1	70	93.797	ENSPCIG00000002058	RC3H1	95	98.655	Phascolarctos_cinereus
ENSBTAG00000052708	RC3H1	100	92.498	ENSPPYG00000000490	RC3H1	98	96.622	Pongo_abelii
ENSBTAG00000052708	RC3H1	80	100.000	ENSPCAG00000010775	RC3H1	87	100.000	Procavia_capensis
ENSBTAG00000052708	RC3H1	82	95.085	ENSPCOG00000021795	RC3H1	96	95.085	Propithecus_coquereli
ENSBTAG00000052708	RC3H1	100	86.849	ENSPVAG00000007593	RC3H1	100	86.849	Pteropus_vampyrus
ENSBTAG00000052708	RC3H1	97	62.032	ENSPNAG00000023439	rc3h1a	95	90.991	Pygocentrus_nattereri
ENSBTAG00000052708	RC3H1	100	95.944	ENSRBIG00000037743	RC3H1	100	95.944	Rhinopithecus_bieti
ENSBTAG00000052708	RC3H1	100	95.852	ENSRROG00000036546	RC3H1	100	95.852	Rhinopithecus_roxellana
ENSBTAG00000052708	RC3H1	93	91.126	ENSSBOG00000010664	RC3H1	100	91.126	Saimiri_boliviensis_boliviensis
ENSBTAG00000052708	RC3H1	100	90.308	ENSSHAG00000007589	RC3H1	100	90.396	Sarcophilus_harrisii
ENSBTAG00000052708	RC3H1	87	86.486	ENSSARG00000004660	RC3H1	86	86.486	Sorex_araneus
ENSBTAG00000052708	RC3H1	100	83.450	ENSSPUG00000018472	RC3H1	100	82.822	Sphenodon_punctatus
ENSBTAG00000052708	RC3H1	100	96.797	ENSSSCG00000015498	RC3H1	100	96.797	Sus_scrofa
ENSBTAG00000052708	RC3H1	100	87.018	ENSTGUG00000004090	RC3H1	100	86.304	Taeniopygia_guttata
ENSBTAG00000052708	RC3H1	94	89.923	ENSTBEG00000005015	RC3H1	93	89.923	Tupaia_belangeri
ENSBTAG00000052708	RC3H1	100	96.300	ENSTTRG00000008572	RC3H1	100	96.300	Tursiops_truncatus
ENSBTAG00000052708	RC3H1	100	94.881	ENSUAMG00000019525	RC3H1	100	94.881	Ursus_americanus
ENSBTAG00000052708	RC3H1	100	95.414	ENSUMAG00000020087	RC3H1	100	95.414	Ursus_maritimus
ENSBTAG00000052708	RC3H1	91	98.423	ENSVPAG00000002591	RC3H1	92	98.423	Vicugna_pacos
ENSBTAG00000052708	RC3H1	100	95.602	ENSVVUG00000014201	RC3H1	100	95.602	Vulpes_vulpes
ENSBTAG00000052708	RC3H1	100	78.329	ENSXETG00000020030	rc3h1	100	77.700	Xenopus_tropicalis