EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSBTAG00000055316 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Bos_taurus
Status: putative
Strand: Plus strand
Length: 472 bases
Position: chr2:94738416-94738887
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSBTAP00000070701	LSM	PF01423.22	6.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSBTAT00000084491	-	351	-	ENSBTAP00000070701	116 (aa)	-	-

Gene Model

Click here to download ENSBTAG00000055316's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSBTAG00000055316's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSBTAG00000055316	-	69	32.927	ENSBTAG00000005634	LSM2	75	33.803
ENSBTAG00000055316	-	81	91.489	ENSBTAG00000047266	-	79	91.489
ENSBTAG00000055316	-	81	94.681	ENSBTAG00000008292	SNRPD1	79	94.681
ENSBTAG00000055316	-	81	92.553	ENSBTAG00000012376	-	70	92.553
ENSBTAG00000055316	-	84	30.928	ENSBTAG00000021262	SNRPD3	61	30.769
ENSBTAG00000055316	-	86	31.000	ENSBTAG00000024096	LSM10	61	33.784

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSBTAG00000055316	-	81	94.681	ENSG00000167088	SNRPD1	79	94.681	Homo_sapiens
ENSBTAG00000055316	-	81	90.426	ENSAPOG00000019446	snrpd1	51	90.426	Acanthochromis_polyacanthus
ENSBTAG00000055316	-	91	90.351	ENSAMEG00000002576	SNRPD1	97	90.351	Ailuropoda_melanoleuca
ENSBTAG00000055316	-	77	92.135	ENSACIG00000011263	snrpd1	79	92.135	Amphilophus_citrinellus
ENSBTAG00000055316	-	81	90.426	ENSAOCG00000007406	snrpd1	79	90.426	Amphiprion_ocellaris
ENSBTAG00000055316	-	77	92.135	ENSAPEG00000012539	SNRPD1	79	92.135	Amphiprion_percula
ENSBTAG00000055316	-	81	85.106	ENSAPEG00000014961	snrpd1	78	85.106	Amphiprion_percula
ENSBTAG00000055316	-	81	90.426	ENSATEG00000014399	snrpd1	79	92.135	Anabas_testudineus
ENSBTAG00000055316	-	95	89.076	ENSAPLG00000012256	SNRPD1	100	89.076	Anas_platyrhynchos
ENSBTAG00000055316	-	81	94.681	ENSACAG00000006364	SNRPD1	79	94.681	Anolis_carolinensis
ENSBTAG00000055316	-	81	94.681	ENSANAG00000025641	SNRPD1	79	94.681	Aotus_nancymaae
ENSBTAG00000055316	-	77	92.135	ENSACLG00000017406	snrpd1	79	92.135	Astatotilapia_calliptera
ENSBTAG00000055316	-	81	91.489	ENSAMXG00000004589	snrpd1	79	91.489	Astyanax_mexicanus
ENSBTAG00000055316	-	74	75.581	WBGene00004916	snr-3	75	71.277	Caenorhabditis_elegans
ENSBTAG00000055316	-	81	94.681	ENSCJAG00000042955	SNRPD1	79	94.681	Callithrix_jacchus
ENSBTAG00000055316	-	81	94.681	ENSCAFG00000018247	SNRPD1	79	94.681	Canis_familiaris
ENSBTAG00000055316	-	79	95.652	ENSCAFG00020015914	SNRPD1	72	95.652	Canis_lupus_dingo
ENSBTAG00000055316	-	81	94.681	ENSCHIG00000005557	SNRPD1	79	94.681	Capra_hircus
ENSBTAG00000055316	-	81	94.681	ENSTSYG00000030028	SNRPD1	79	94.681	Carlito_syrichta
ENSBTAG00000055316	-	91	90.351	ENSCAPG00000008103	SNRPD1	98	90.351	Cavia_aperea
ENSBTAG00000055316	-	91	90.351	ENSCPOG00000004679	SNRPD1	98	90.351	Cavia_porcellus
ENSBTAG00000055316	-	81	90.426	ENSCCAG00000005390	-	79	90.426	Cebus_capucinus
ENSBTAG00000055316	-	81	94.681	ENSCCAG00000032658	SNRPD1	79	94.681	Cebus_capucinus
ENSBTAG00000055316	-	81	90.426	ENSCCAG00000016652	-	79	90.426	Cebus_capucinus
ENSBTAG00000055316	-	81	93.617	ENSCCAG00000020611	-	79	93.617	Cebus_capucinus
ENSBTAG00000055316	-	81	94.681	ENSCATG00000039978	SNRPD1	79	94.681	Cercocebus_atys
ENSBTAG00000055316	-	81	94.681	ENSCLAG00000008691	SNRPD1	79	94.681	Chinchilla_lanigera
ENSBTAG00000055316	-	81	94.681	ENSCSAG00000017654	SNRPD1	79	94.681	Chlorocebus_sabaeus
ENSBTAG00000055316	-	81	94.681	ENSCPBG00000023143	SNRPD1	79	95.652	Chrysemys_picta_bellii
ENSBTAG00000055316	-	72	83.333	ENSCING00000024100	-	67	83.333	Ciona_intestinalis
ENSBTAG00000055316	-	73	81.176	ENSCSAVG00000004578	-	93	65.517	Ciona_savignyi
ENSBTAG00000055316	-	87	90.099	ENSCGRG00001021055	-	79	94.681	Cricetulus_griseus_chok1gshd
ENSBTAG00000055316	-	81	70.213	ENSCGRG00001009945	-	83	70.213	Cricetulus_griseus_chok1gshd
ENSBTAG00000055316	-	87	90.099	ENSCGRG00000000490	-	79	94.681	Cricetulus_griseus_crigri
ENSBTAG00000055316	-	81	70.213	ENSCGRG00000006224	-	83	70.213	Cricetulus_griseus_crigri
ENSBTAG00000055316	-	79	90.217	ENSCSEG00000018141	snrpd1	79	89.362	Cynoglossus_semilaevis
ENSBTAG00000055316	-	81	90.426	ENSCVAG00000000534	snrpd1	79	90.426	Cyprinodon_variegatus
ENSBTAG00000055316	-	81	91.489	ENSDARG00000011648	snrpd1	94	94.382	Danio_rerio
ENSBTAG00000055316	-	81	94.681	ENSDNOG00000040310	SNRPD1	79	94.681	Dasypus_novemcinctus
ENSBTAG00000055316	-	81	94.681	ENSDORG00000008349	Snrpd1	79	94.681	Dipodomys_ordii
ENSBTAG00000055316	-	79	78.261	FBgn0261933	SmD1	74	78.261	Drosophila_melanogaster
ENSBTAG00000055316	-	69	88.636	ENSETEG00000011689	SNRPD1	74	88.636	Echinops_telfairi
ENSBTAG00000055316	-	85	82.828	ENSEBUG00000003170	snrpd1	91	86.957	Eptatretus_burgeri
ENSBTAG00000055316	-	90	90.179	ENSEASG00005002433	SNRPD1	100	90.179	Equus_asinus_asinus
ENSBTAG00000055316	-	90	90.179	ENSECAG00000014373	SNRPD1	100	90.179	Equus_caballus
ENSBTAG00000055316	-	77	97.753	ENSEEUG00000004987	SNRPD1	100	97.753	Erinaceus_europaeus
ENSBTAG00000055316	-	84	89.796	ENSELUG00000000088	snrpd1	78	91.398	Esox_lucius
ENSBTAG00000055316	-	81	94.681	ENSFCAG00000012352	SNRPD1	79	94.681	Felis_catus
ENSBTAG00000055316	-	90	90.179	ENSFALG00000002646	SNRPD1	100	90.179	Ficedula_albicollis
ENSBTAG00000055316	-	81	91.489	ENSGMOG00000015607	snrpd1	79	91.489	Gadus_morhua
ENSBTAG00000055316	-	81	94.681	ENSGALG00000041334	SNRPD1	79	94.681	Gallus_gallus
ENSBTAG00000055316	-	81	90.426	ENSGAFG00000011171	snrpd1	79	90.426	Gambusia_affinis
ENSBTAG00000055316	-	81	91.489	ENSGACG00000005201	SNRPD1	79	91.489	Gasterosteus_aculeatus
ENSBTAG00000055316	-	81	94.681	ENSGAGG00000011197	SNRPD1	79	94.681	Gopherus_agassizii
ENSBTAG00000055316	-	81	94.681	ENSGGOG00000041053	SNRPD1	79	94.681	Gorilla_gorilla
ENSBTAG00000055316	-	81	89.362	ENSGGOG00000026706	-	78	89.362	Gorilla_gorilla
ENSBTAG00000055316	-	81	90.426	ENSHBUG00000003236	snrpd1	79	90.426	Haplochromis_burtoni
ENSBTAG00000055316	-	81	94.681	ENSHGLG00000007152	SNRPD1	79	94.681	Heterocephalus_glaber_female
ENSBTAG00000055316	-	81	94.681	ENSHGLG00100008618	SNRPD1	79	94.681	Heterocephalus_glaber_male
ENSBTAG00000055316	-	81	90.426	ENSIPUG00000003576	snrpd1	79	90.426	Ictalurus_punctatus
ENSBTAG00000055316	-	93	88.793	ENSSTOG00000000485	SNRPD1	98	88.793	Ictidomys_tridecemlineatus
ENSBTAG00000055316	-	81	94.681	ENSJJAG00000017698	Snrpd1	79	94.681	Jaculus_jaculus
ENSBTAG00000055316	-	81	90.426	ENSKMAG00000005987	snrpd1	79	90.426	Kryptolebias_marmoratus
ENSBTAG00000055316	-	81	90.426	ENSLBEG00000003327	snrpd1	79	90.426	Labrus_bergylta
ENSBTAG00000055316	-	95	88.136	ENSLACG00000001955	SNRPD1	98	88.136	Latimeria_chalumnae
ENSBTAG00000055316	-	81	92.553	ENSLOCG00000002003	snrpd1	80	92.553	Lepisosteus_oculatus
ENSBTAG00000055316	-	81	94.681	ENSLAFG00000005819	SNRPD1	80	94.681	Loxodonta_africana
ENSBTAG00000055316	-	81	94.681	ENSMFAG00000042080	SNRPD1	79	94.681	Macaca_fascicularis
ENSBTAG00000055316	-	91	90.351	ENSMMUG00000003992	SNRPD1	97	90.351	Macaca_mulatta
ENSBTAG00000055316	-	81	94.681	ENSMNEG00000041296	SNRPD1	79	94.681	Macaca_nemestrina
ENSBTAG00000055316	-	81	94.681	ENSMLEG00000028659	SNRPD1	79	94.681	Mandrillus_leucophaeus
ENSBTAG00000055316	-	81	90.426	ENSMAMG00000012971	snrpd1	79	90.426	Mastacembelus_armatus
ENSBTAG00000055316	-	81	90.426	ENSMZEG00005004685	snrpd1	79	90.426	Maylandia_zebra
ENSBTAG00000055316	-	91	90.351	ENSMGAG00000011598	SNRPD1	94	90.351	Meleagris_gallopavo
ENSBTAG00000055316	-	81	79.787	ENSMAUG00000016467	-	85	79.787	Mesocricetus_auratus
ENSBTAG00000055316	-	81	79.787	ENSMAUG00000016502	-	85	79.787	Mesocricetus_auratus
ENSBTAG00000055316	-	81	93.617	ENSMAUG00000006829	-	58	97.753	Mesocricetus_auratus
ENSBTAG00000055316	-	81	94.681	ENSMICG00000044066	SNRPD1	79	94.681	Microcebus_murinus
ENSBTAG00000055316	-	91	90.351	ENSMOCG00000017367	Snrpd1	94	90.351	Microtus_ochrogaster
ENSBTAG00000055316	-	81	90.426	ENSMMOG00000019089	snrpd1	79	90.426	Mola_mola
ENSBTAG00000055316	-	91	90.351	ENSMODG00000021487	SNRPD1	98	90.351	Monodelphis_domestica
ENSBTAG00000055316	-	81	90.426	ENSMALG00000014459	snrpd1	79	90.426	Monopterus_albus
ENSBTAG00000055316	-	81	94.681	MGP_CAROLIEiJ_G0021994	Snrpd1	79	94.681	Mus_caroli
ENSBTAG00000055316	-	81	94.681	ENSMUSG00000002477	Snrpd1	79	94.681	Mus_musculus
ENSBTAG00000055316	-	81	94.681	MGP_PahariEiJ_G0018731	Snrpd1	79	94.681	Mus_pahari
ENSBTAG00000055316	-	81	94.681	MGP_SPRETEiJ_G0022910	Snrpd1	79	94.681	Mus_spretus
ENSBTAG00000055316	-	86	94.000	ENSMPUG00000020041	-	84	94.000	Mustela_putorius_furo
ENSBTAG00000055316	-	91	90.351	ENSMPUG00000005567	-	97	90.351	Mustela_putorius_furo
ENSBTAG00000055316	-	81	94.681	ENSMLUG00000009124	SNRPD1	73	94.681	Myotis_lucifugus
ENSBTAG00000055316	-	87	89.109	ENSNGAG00000023946	Snrpd1	79	94.681	Nannospalax_galili
ENSBTAG00000055316	-	79	91.304	ENSNBRG00000012119	snrpd1	76	91.304	Neolamprologus_brichardi
ENSBTAG00000055316	-	81	91.489	ENSNLEG00000031430	SNRPD1	78	91.489	Nomascus_leucogenys
ENSBTAG00000055316	-	81	94.681	ENSODEG00000005764	SNRPD1	79	94.681	Octodon_degus
ENSBTAG00000055316	-	81	90.426	ENSONIG00000002486	snrpd1	79	90.426	Oreochromis_niloticus
ENSBTAG00000055316	-	84	86.598	ENSOANG00000004638	-	82	86.598	Ornithorhynchus_anatinus
ENSBTAG00000055316	-	91	90.351	ENSOCUG00000023761	-	97	90.351	Oryctolagus_cuniculus
ENSBTAG00000055316	-	86	94.000	ENSOCUG00000014399	-	84	94.000	Oryctolagus_cuniculus
ENSBTAG00000055316	-	77	92.135	ENSORLG00000012516	snrpd1	79	92.135	Oryzias_latipes
ENSBTAG00000055316	-	81	90.426	ENSORLG00020005743	snrpd1	79	90.426	Oryzias_latipes_hni
ENSBTAG00000055316	-	81	90.426	ENSORLG00015013402	snrpd1	79	90.426	Oryzias_latipes_hsok
ENSBTAG00000055316	-	81	90.426	ENSOMEG00000011571	snrpd1	79	90.426	Oryzias_melastigma
ENSBTAG00000055316	-	94	88.034	ENSOGAG00000007833	SNRPD1	98	88.034	Otolemur_garnettii
ENSBTAG00000055316	-	81	94.681	ENSOARG00000003413	-	71	94.681	Ovis_aries
ENSBTAG00000055316	-	81	94.681	ENSPPAG00000042593	SNRPD1	79	94.681	Pan_paniscus
ENSBTAG00000055316	-	86	65.000	ENSPPRG00000005009	-	79	65.000	Panthera_pardus
ENSBTAG00000055316	-	81	94.681	ENSPPRG00000002399	SNRPD1	79	94.681	Panthera_pardus
ENSBTAG00000055316	-	91	90.351	ENSPTIG00000013206	SNRPD1	100	90.351	Panthera_tigris_altaica
ENSBTAG00000055316	-	84	94.898	ENSPTRG00000009909	SNRPD1	79	94.681	Pan_troglodytes
ENSBTAG00000055316	-	86	89.000	ENSPTRG00000050159	-	85	89.000	Pan_troglodytes
ENSBTAG00000055316	-	81	94.681	ENSPANG00000023478	SNRPD1	79	94.681	Papio_anubis
ENSBTAG00000055316	-	75	93.103	ENSPKIG00000021610	snrpd1	78	93.103	Paramormyrops_kingsleyae
ENSBTAG00000055316	-	81	91.489	ENSPKIG00000003985	SNRPD1	79	91.489	Paramormyrops_kingsleyae
ENSBTAG00000055316	-	81	90.426	ENSPMGG00000001862	snrpd1	79	90.426	Periophthalmus_magnuspinnatus
ENSBTAG00000055316	-	87	90.099	ENSPEMG00000014773	-	79	94.681	Peromyscus_maniculatus_bairdii
ENSBTAG00000055316	-	86	79.412	ENSPMAG00000003938	-	84	79.412	Petromyzon_marinus
ENSBTAG00000055316	-	90	90.179	ENSPCIG00000020320	SNRPD1	100	90.179	Phascolarctos_cinereus
ENSBTAG00000055316	-	81	90.426	ENSPFOG00000012448	SNRPD1	83	90.426	Poecilia_formosa
ENSBTAG00000055316	-	81	90.426	ENSPLAG00000006738	snrpd1	83	90.426	Poecilia_latipinna
ENSBTAG00000055316	-	81	90.426	ENSPMEG00000021942	snrpd1	83	90.426	Poecilia_mexicana
ENSBTAG00000055316	-	81	90.426	ENSPREG00000007094	snrpd1	79	90.426	Poecilia_reticulata
ENSBTAG00000055316	-	81	94.681	ENSPPYG00000025874	SNRPD1	79	94.681	Pongo_abelii
ENSBTAG00000055316	-	81	94.681	ENSPCOG00000013327	SNRPD1	79	94.681	Propithecus_coquereli
ENSBTAG00000055316	-	81	94.681	ENSPVAG00000005511	SNRPD1	63	94.681	Pteropus_vampyrus
ENSBTAG00000055316	-	81	90.426	ENSPNAG00000017824	snrpd1	79	90.426	Pygocentrus_nattereri
ENSBTAG00000055316	-	81	94.681	ENSRNOG00000013714	Snrpd1	79	94.681	Rattus_norvegicus
ENSBTAG00000055316	-	81	94.681	ENSRBIG00000022996	SNRPD1	79	94.681	Rhinopithecus_bieti
ENSBTAG00000055316	-	81	94.681	ENSRROG00000027640	SNRPD1	79	94.681	Rhinopithecus_roxellana
ENSBTAG00000055316	-	81	94.681	ENSSBOG00000020998	SNRPD1	79	94.681	Saimiri_boliviensis_boliviensis
ENSBTAG00000055316	-	81	94.681	ENSSHAG00000011791	SNRPD1	79	94.681	Sarcophilus_harrisii
ENSBTAG00000055316	-	81	89.362	ENSSFOG00015022253	-	79	89.362	Scleropages_formosus
ENSBTAG00000055316	-	81	89.362	ENSSFOG00015008809	-	79	89.362	Scleropages_formosus
ENSBTAG00000055316	-	81	89.362	ENSSMAG00000008765	snrpd1	79	91.011	Scophthalmus_maximus
ENSBTAG00000055316	-	78	92.308	ENSSDUG00000010521	snrpd1	77	92.308	Seriola_dumerili
ENSBTAG00000055316	-	81	90.426	ENSSLDG00000011858	snrpd1	79	90.426	Seriola_lalandi_dorsalis
ENSBTAG00000055316	-	58	98.507	ENSSARG00000004271	SNRPD1	100	98.507	Sorex_araneus
ENSBTAG00000055316	-	81	94.681	ENSSPUG00000002824	SNRPD1	79	94.681	Sphenodon_punctatus
ENSBTAG00000055316	-	77	92.135	ENSSPAG00000015229	snrpd1	79	92.135	Stegastes_partitus
ENSBTAG00000055316	-	90	90.179	ENSSSCG00000003701	SNRPD1	100	90.179	Sus_scrofa
ENSBTAG00000055316	-	95	89.076	ENSTGUG00000005095	SNRPD1	100	89.076	Taeniopygia_guttata
ENSBTAG00000055316	-	77	92.135	ENSTRUG00000008977	snrpd1	79	92.135	Takifugu_rubripes
ENSBTAG00000055316	-	69	87.500	ENSTNIG00000001224	snrpd1	77	87.500	Tetraodon_nigroviridis
ENSBTAG00000055316	-	69	88.636	ENSTBEG00000013776	SNRPD1	100	88.636	Tupaia_belangeri
ENSBTAG00000055316	-	91	90.351	ENSTTRG00000002654	SNRPD1	99	90.351	Tursiops_truncatus
ENSBTAG00000055316	-	91	90.351	ENSUAMG00000013431	SNRPD1	94	97.701	Ursus_americanus
ENSBTAG00000055316	-	81	94.681	ENSUMAG00000019740	SNRPD1	79	94.681	Ursus_maritimus
ENSBTAG00000055316	-	81	94.681	ENSVPAG00000010056	SNRPD1	63	94.681	Vicugna_pacos
ENSBTAG00000055316	-	90	90.179	ENSVVUG00000004009	SNRPD1	100	90.179	Vulpes_vulpes
ENSBTAG00000055316	-	81	92.553	ENSXETG00000027354	snrpd1	79	92.553	Xenopus_tropicalis
ENSBTAG00000055316	-	81	90.426	ENSXCOG00000020108	snrpd1	79	90.426	Xiphophorus_couchianus
ENSBTAG00000055316	-	81	90.426	ENSXMAG00000003368	snrpd1	79	90.426	Xiphophorus_maculatus