EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSCAFG00000000509 (Gene tree)
Gene ID: 474839
Gene Symbol: DDX39B
Alias: -
Full Name: DExD-box helicase 39B
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 15790 bases
Position: chr12:1028703-1044492
Accession: 39855
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000031897	ResIII	PF04851.15	1.1e-07	1	1
ENSCAFP00000031897	DEAD	PF00270.29	5.8e-39	1	1
ENSCAFP00000000732	DEAD	PF00270.29	1.7e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000036511	-	1287	XM_005627043	ENSCAFP00000031897	428 (aa)	XP_022281427	Q5WR10
ENSCAFT00000000797	-	5790	-	ENSCAFP00000000732	310 (aa)	-	K9J6N8

Gene Model

Click here to download ENSCAFG00000000509's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03013	RNA transport	KEGG
cfa03015	mRNA surveillance pathway	KEGG
cfa03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000000509's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000000509	DDX39B	97	32.581	ENSCAFG00000020137	DDX19A	82	32.832
ENSCAFG00000000509	DDX39B	98	31.511	ENSCAFG00000014251	DDX3X	57	30.052
ENSCAFG00000000509	DDX39B	100	93.548	ENSCAFG00000016355	DDX39A	100	91.822
ENSCAFG00000000509	DDX39B	96	37.248	ENSCAFG00000005614	EIF4A3	88	38.356
ENSCAFG00000000509	DDX39B	95	30.592	ENSCAFG00000014512	DDX49	77	32.021
ENSCAFG00000000509	DDX39B	98	35.738	ENSCAFG00000012442	DDX6	88	34.033
ENSCAFG00000000509	DDX39B	96	35.570	ENSCAFG00000016632	EIF4A1	95	36.802
ENSCAFG00000000509	DDX39B	88	36.000	ENSCAFG00000013224	DDX47	71	35.447
ENSCAFG00000000509	DDX39B	97	30.868	ENSCAFG00000010519	DDX25	98	31.250
ENSCAFG00000000509	DDX39B	96	35.570	ENSCAFG00000004690	-	95	36.802
ENSCAFG00000000509	DDX39B	89	30.035	ENSCAFG00000011713	DDX5	50	30.029
ENSCAFG00000000509	DDX39B	96	36.577	ENSCAFG00000013659	EIF4A2	90	38.919

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000000509	DDX39B	100	100.000	ENSG00000198563	DDX39B	100	99.533	Homo_sapiens
ENSCAFG00000000509	DDX39B	100	100.000	ENSAMEG00000009508	DDX39B	99	99.766	Ailuropoda_melanoleuca
ENSCAFG00000000509	DDX39B	98	96.393	ENSACIG00000004534	ddx39b	98	93.443	Amphilophus_citrinellus
ENSCAFG00000000509	DDX39B	100	95.484	ENSATEG00000012366	ddx39b	100	93.056	Anabas_testudineus
ENSCAFG00000000509	DDX39B	100	99.035	ENSACAG00000012240	DDX39B	100	96.970	Anolis_carolinensis
ENSCAFG00000000509	DDX39B	100	100.000	ENSANAG00000030372	DDX39B	100	99.533	Aotus_nancymaae
ENSCAFG00000000509	DDX39B	99	93.851	ENSACLG00000018759	ddx39b	99	90.553	Astatotilapia_calliptera
ENSCAFG00000000509	DDX39B	100	96.129	ENSAMXG00000017837	ddx39b	100	92.890	Astyanax_mexicanus
ENSCAFG00000000509	DDX39B	100	99.677	ENSBTAG00000014490	DDX39B	100	99.299	Bos_taurus
ENSCAFG00000000509	DDX39B	100	100.000	ENSCJAG00000003152	DDX39B	100	99.533	Callithrix_jacchus
ENSCAFG00000000509	DDX39B	100	100.000	ENSCAFG00020020530	DDX39B	100	100.000	Canis_lupus_dingo
ENSCAFG00000000509	DDX39B	100	99.677	ENSCHIG00000004579	DDX39B	100	99.299	Capra_hircus
ENSCAFG00000000509	DDX39B	100	100.000	ENSTSYG00000010226	-	100	99.533	Carlito_syrichta
ENSCAFG00000000509	DDX39B	100	85.047	ENSTSYG00000029741	-	91	87.619	Carlito_syrichta
ENSCAFG00000000509	DDX39B	100	99.677	ENSCAPG00000010066	DDX39B	100	99.299	Cavia_aperea
ENSCAFG00000000509	DDX39B	100	99.677	ENSCPOG00000002335	DDX39B	100	99.299	Cavia_porcellus
ENSCAFG00000000509	DDX39B	100	100.000	ENSCCAG00000027897	DDX39B	100	99.533	Cebus_capucinus
ENSCAFG00000000509	DDX39B	99	89.882	ENSCATG00000043709	DDX39B	99	89.882	Cercocebus_atys
ENSCAFG00000000509	DDX39B	100	99.677	ENSCLAG00000014555	DDX39B	100	99.299	Chinchilla_lanigera
ENSCAFG00000000509	DDX39B	99	99.674	ENSCSAG00000008517	DDX39B	100	99.294	Chlorocebus_sabaeus
ENSCAFG00000000509	DDX39B	88	100.000	ENSCPBG00000014671	-	100	100.000	Chrysemys_picta_bellii
ENSCAFG00000000509	DDX39B	100	100.000	ENSCANG00000041217	DDX39B	100	99.533	Colobus_angolensis_palliatus
ENSCAFG00000000509	DDX39B	99	83.172	ENSCGRG00001021916	-	89	84.358	Cricetulus_griseus_chok1gshd
ENSCAFG00000000509	DDX39B	57	98.776	ENSCGRG00001017315	-	95	98.544	Cricetulus_griseus_chok1gshd
ENSCAFG00000000509	DDX39B	57	98.776	ENSCGRG00000012479	-	76	98.776	Cricetulus_griseus_crigri
ENSCAFG00000000509	DDX39B	100	96.129	ENSDARG00000036069	ddx39b	100	92.644	Danio_rerio
ENSCAFG00000000509	DDX39B	100	100.000	ENSDNOG00000010215	DDX39B	100	99.533	Dasypus_novemcinctus
ENSCAFG00000000509	DDX39B	95	97.270	ENSDORG00000004985	Ddx39b	100	99.733	Dipodomys_ordii
ENSCAFG00000000509	DDX39B	87	86.364	ENSETEG00000009649	DDX39B	87	86.364	Echinops_telfairi
ENSCAFG00000000509	DDX39B	100	100.000	ENSEASG00005017156	DDX39B	100	99.533	Equus_asinus_asinus
ENSCAFG00000000509	DDX39B	100	100.000	ENSECAG00000007750	DDX39B	100	99.533	Equus_caballus
ENSCAFG00000000509	DDX39B	100	95.484	ENSELUG00000017904	ddx39b	100	92.575	Esox_lucius
ENSCAFG00000000509	DDX39B	100	100.000	ENSFCAG00000004497	DDX39B	100	99.766	Felis_catus
ENSCAFG00000000509	DDX39B	100	99.677	ENSFDAG00000011074	DDX39B	100	99.299	Fukomys_damarensis
ENSCAFG00000000509	DDX39B	100	99.677	ENSGAGG00000001300	-	80	99.684	Gopherus_agassizii
ENSCAFG00000000509	DDX39B	100	100.000	ENSGGOG00000005989	DDX39B	100	99.533	Gorilla_gorilla
ENSCAFG00000000509	DDX39B	100	99.677	ENSHGLG00000019248	DDX39B	100	98.832	Heterocephalus_glaber_female
ENSCAFG00000000509	DDX39B	100	99.677	ENSHGLG00100011850	DDX39B	100	98.832	Heterocephalus_glaber_male
ENSCAFG00000000509	DDX39B	100	95.484	ENSIPUG00000015733	DDX39B	94	92.202	Ictalurus_punctatus
ENSCAFG00000000509	DDX39B	100	99.355	ENSSTOG00000012838	DDX39B	100	99.065	Ictidomys_tridecemlineatus
ENSCAFG00000000509	DDX39B	100	99.677	ENSJJAG00000005660	-	100	98.832	Jaculus_jaculus
ENSCAFG00000000509	DDX39B	66	79.078	ENSLBEG00000017177	-	81	79.078	Labrus_bergylta
ENSCAFG00000000509	DDX39B	98	79.672	ENSLBEG00000012254	ddx39b	99	78.487	Labrus_bergylta
ENSCAFG00000000509	DDX39B	100	99.355	ENSLACG00000002110	DDX39B	100	89.862	Latimeria_chalumnae
ENSCAFG00000000509	DDX39B	100	99.677	ENSLAFG00000014202	DDX39B	100	99.299	Loxodonta_africana
ENSCAFG00000000509	DDX39B	100	100.000	ENSMFAG00000034233	DDX39B	100	99.533	Macaca_fascicularis
ENSCAFG00000000509	DDX39B	100	100.000	ENSMMUG00000008839	DDX39B	100	99.533	Macaca_mulatta
ENSCAFG00000000509	DDX39B	100	100.000	ENSMNEG00000041059	DDX39B	100	99.533	Macaca_nemestrina
ENSCAFG00000000509	DDX39B	100	100.000	ENSMLEG00000043791	DDX39B	100	99.533	Mandrillus_leucophaeus
ENSCAFG00000000509	DDX39B	99	93.851	ENSMZEG00005017654	ddx39b	99	90.553	Maylandia_zebra
ENSCAFG00000000509	DDX39B	100	99.677	ENSMAUG00000008059	Ddx39b	100	99.065	Mesocricetus_auratus
ENSCAFG00000000509	DDX39B	100	100.000	ENSMICG00000017349	DDX39B	100	99.533	Microcebus_murinus
ENSCAFG00000000509	DDX39B	100	100.000	ENSMOCG00000011169	Ddx39b	100	99.299	Microtus_ochrogaster
ENSCAFG00000000509	DDX39B	88	99.202	ENSMODG00000015791	DDX39B	88	99.202	Monodelphis_domestica
ENSCAFG00000000509	DDX39B	100	100.000	ENSMUSG00000019432	Ddx39b	100	100.000	Mus_musculus
ENSCAFG00000000509	DDX39B	100	100.000	MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	Mus_pahari
ENSCAFG00000000509	DDX39B	100	100.000	MGP_SPRETEiJ_G0022424	Ddx39b	100	99.299	Mus_spretus
ENSCAFG00000000509	DDX39B	100	100.000	ENSMPUG00000011407	DDX39B	100	99.766	Mustela_putorius_furo
ENSCAFG00000000509	DDX39B	100	100.000	ENSMLUG00000001681	DDX39B	100	100.000	Myotis_lucifugus
ENSCAFG00000000509	DDX39B	100	100.000	ENSNGAG00000022948	Ddx39b	100	99.533	Nannospalax_galili
ENSCAFG00000000509	DDX39B	92	99.649	ENSNLEG00000006094	DDX39B	81	99.649	Nomascus_leucogenys
ENSCAFG00000000509	DDX39B	86	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
ENSCAFG00000000509	DDX39B	100	100.000	ENSOPRG00000011923	DDX39B	100	99.766	Ochotona_princeps
ENSCAFG00000000509	DDX39B	100	99.677	ENSODEG00000018083	DDX39B	100	99.065	Octodon_degus
ENSCAFG00000000509	DDX39B	100	94.194	ENSONIG00000004740	ddx39b	100	91.667	Oreochromis_niloticus
ENSCAFG00000000509	DDX39B	55	98.312	ENSOANG00000008361	DDX39B	95	98.312	Ornithorhynchus_anatinus
ENSCAFG00000000509	DDX39B	100	99.677	ENSOCUG00000024126	DDX39B	100	96.163	Oryctolagus_cuniculus
ENSCAFG00000000509	DDX39B	99	98.371	ENSOGAG00000009067	-	100	98.457	Otolemur_garnettii
ENSCAFG00000000509	DDX39B	100	98.714	ENSOGAG00000028850	-	100	98.601	Otolemur_garnettii
ENSCAFG00000000509	DDX39B	100	99.677	ENSOARG00000008787	DDX39B	98	99.299	Ovis_aries
ENSCAFG00000000509	DDX39B	100	100.000	ENSPPAG00000043072	DDX39B	100	99.533	Pan_paniscus
ENSCAFG00000000509	DDX39B	100	100.000	ENSPPRG00000001913	DDX39B	100	99.766	Panthera_pardus
ENSCAFG00000000509	DDX39B	100	99.677	ENSPTIG00000017669	DDX39B	100	98.832	Panthera_tigris_altaica
ENSCAFG00000000509	DDX39B	100	100.000	ENSPTRG00000032509	DDX39B	100	99.533	Pan_troglodytes
ENSCAFG00000000509	DDX39B	100	100.000	ENSPANG00000018609	DDX39B	100	99.533	Papio_anubis
ENSCAFG00000000509	DDX39B	100	95.484	ENSPKIG00000011324	ddx39b	100	91.533	Paramormyrops_kingsleyae
ENSCAFG00000000509	DDX39B	100	100.000	ENSPEMG00000016905	Ddx39b	100	99.065	Peromyscus_maniculatus_bairdii
ENSCAFG00000000509	DDX39B	100	100.000	ENSPCIG00000017572	DDX39B	100	99.533	Phascolarctos_cinereus
ENSCAFG00000000509	DDX39B	100	100.000	ENSPPYG00000016433	DDX39B	100	99.533	Pongo_abelii
ENSCAFG00000000509	DDX39B	92	99.648	ENSPCAG00000003484	DDX39B	100	99.648	Procavia_capensis
ENSCAFG00000000509	DDX39B	100	100.000	ENSPCOG00000018656	DDX39B	100	99.533	Propithecus_coquereli
ENSCAFG00000000509	DDX39B	100	100.000	ENSPVAG00000004653	DDX39B	100	99.299	Pteropus_vampyrus
ENSCAFG00000000509	DDX39B	99	82.670	ENSPNYG00000010382	ddx39b	98	82.670	Pundamilia_nyererei
ENSCAFG00000000509	DDX39B	100	96.129	ENSPNAG00000026926	ddx39b	100	92.431	Pygocentrus_nattereri
ENSCAFG00000000509	DDX39B	100	100.000	ENSRNOG00000000841	Ddx39b	100	99.299	Rattus_norvegicus
ENSCAFG00000000509	DDX39B	100	89.252	ENSRBIG00000031309	DDX39B	100	89.252	Rhinopithecus_bieti
ENSCAFG00000000509	DDX39B	100	100.000	ENSRROG00000039517	DDX39B	100	99.533	Rhinopithecus_roxellana
ENSCAFG00000000509	DDX39B	100	89.252	ENSSBOG00000035513	-	100	89.252	Saimiri_boliviensis_boliviensis
ENSCAFG00000000509	DDX39B	100	100.000	ENSSHAG00000003209	DDX39B	100	99.533	Sarcophilus_harrisii
ENSCAFG00000000509	DDX39B	100	95.484	ENSSFOG00015016107	ddx39b	100	91.762	Scleropages_formosus
ENSCAFG00000000509	DDX39B	100	96.129	ENSSDUG00000011557	ddx39b	100	93.750	Seriola_dumerili
ENSCAFG00000000509	DDX39B	100	95.806	ENSSLDG00000015763	ddx39b	100	93.519	Seriola_lalandi_dorsalis
ENSCAFG00000000509	DDX39B	87	87.968	ENSSARG00000005245	DDX39B	100	87.968	Sorex_araneus
ENSCAFG00000000509	DDX39B	100	99.355	ENSSPUG00000012805	DDX39B	100	97.664	Sphenodon_punctatus
ENSCAFG00000000509	DDX39B	100	100.000	ENSSSCG00000001400	DDX39B	100	100.000	Sus_scrofa
ENSCAFG00000000509	DDX39B	100	76.402	ENSTBEG00000003721	DDX39B	100	76.402	Tupaia_belangeri
ENSCAFG00000000509	DDX39B	100	90.993	ENSTTRG00000014074	DDX39B	100	90.993	Tursiops_truncatus
ENSCAFG00000000509	DDX39B	100	86.977	ENSUAMG00000027335	DDX39B	100	86.977	Ursus_americanus
ENSCAFG00000000509	DDX39B	100	94.839	ENSUMAG00000015124	DDX39B	100	90.888	Ursus_maritimus
ENSCAFG00000000509	DDX39B	61	98.230	ENSVPAG00000009167	-	74	98.230	Vicugna_pacos
ENSCAFG00000000509	DDX39B	100	100.000	ENSVVUG00000019518	DDX39B	99	100.000	Vulpes_vulpes
ENSCAFG00000000509	DDX39B	100	83.721	ENSXETG00000002498	ddx39b	99	83.721	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	IEA	Process
GO:0000346	transcription export complex	-	IEA	Component
GO:0004004	ATP-dependent RNA helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005687	U4 snRNP	-	IEA	Component
GO:0005688	U6 snRNP	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006406	mRNA export from nucleus	-	IEA	Process
GO:0010501	RNA secondary structure unwinding	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0017070	U6 snRNA binding	-	IEA	Function
GO:0030621	U4 snRNA binding	-	IEA	Function
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISS	Process
GO:0042802	identical protein binding	-	IEA	Function
GO:0043008	ATP-dependent protein binding	-	IEA	Function
GO:0046784	viral mRNA export from host cell nucleus	-	IEA	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISS	Process