EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000001600 (Gene tree)
Gene ID: 475126
Gene Symbol: CPSF1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 10585 bases
Position: chr13:37814632-37825216
Accession: 39573
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000040297	CPSF_A	PF03178.15	7.1e-92	1	1
ENSCAFP00000002333	CPSF_A	PF03178.15	8.1e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000002514	-	4197	XM_005628314	ENSCAFP00000002333	1398 (aa)	XP_005628371	F1PC28
ENSCAFT00000043656	-	6267	-	ENSCAFP00000040297	1107 (aa)	-	J9P418

Gene Model

Click here to download ENSCAFG00000001600's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000001600's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000001600	CPSF1	100	96.573	ENSG00000071894	CPSF1	97	96.286	Homo_sapiens
ENSCAFG00000001600	CPSF1	100	77.817	ENSAPOG00000019621	cpsf1	99	78.328	Acanthochromis_polyacanthus
ENSCAFG00000001600	CPSF1	100	96.855	ENSAMEG00000005557	CPSF1	100	96.855	Ailuropoda_melanoleuca
ENSCAFG00000001600	CPSF1	100	77.928	ENSACIG00000006112	cpsf1	96	78.510	Amphilophus_citrinellus
ENSCAFG00000001600	CPSF1	100	79.357	ENSAOCG00000007120	cpsf1	96	79.644	Amphiprion_ocellaris
ENSCAFG00000001600	CPSF1	100	79.767	ENSAPEG00000005755	cpsf1	96	80.043	Amphiprion_percula
ENSCAFG00000001600	CPSF1	100	77.419	ENSATEG00000011097	cpsf1	99	78.358	Anabas_testudineus
ENSCAFG00000001600	CPSF1	92	81.846	ENSACAG00000009655	CPSF1	97	81.846	Anolis_carolinensis
ENSCAFG00000001600	CPSF1	100	96.570	ENSANAG00000036514	CPSF1	97	96.212	Aotus_nancymaae
ENSCAFG00000001600	CPSF1	100	77.865	ENSACLG00000012231	cpsf1	99	78.632	Astatotilapia_calliptera
ENSCAFG00000001600	CPSF1	100	75.989	ENSAMXG00000008485	cpsf1	96	73.496	Astyanax_mexicanus
ENSCAFG00000001600	CPSF1	100	95.221	ENSBTAG00000008355	CPSF1	100	95.317	Bos_taurus
ENSCAFG00000001600	CPSF1	99	32.240	WBGene00022301	cpsf-1	99	40.282	Caenorhabditis_elegans
ENSCAFG00000001600	CPSF1	100	96.300	ENSCJAG00000021421	CPSF1	97	95.926	Callithrix_jacchus
ENSCAFG00000001600	CPSF1	100	100.000	ENSCAFG00020020821	CPSF1	97	99.857	Canis_lupus_dingo
ENSCAFG00000001600	CPSF1	100	91.382	ENSCHIG00000015833	CPSF1	97	91.382	Capra_hircus
ENSCAFG00000001600	CPSF1	100	97.112	ENSTSYG00000028560	CPSF1	97	96.712	Carlito_syrichta
ENSCAFG00000001600	CPSF1	100	96.658	ENSCAPG00000014921	CPSF1	99	95.276	Cavia_aperea
ENSCAFG00000001600	CPSF1	100	96.658	ENSCPOG00000011448	CPSF1	97	94.568	Cavia_porcellus
ENSCAFG00000001600	CPSF1	100	96.570	ENSCCAG00000037658	CPSF1	97	96.212	Cebus_capucinus
ENSCAFG00000001600	CPSF1	100	96.570	ENSCATG00000037234	CPSF1	97	96.283	Cercocebus_atys
ENSCAFG00000001600	CPSF1	100	96.929	ENSCLAG00000012166	CPSF1	97	96.638	Chinchilla_lanigera
ENSCAFG00000001600	CPSF1	100	96.300	ENSCSAG00000008502	CPSF1	97	95.997	Chlorocebus_sabaeus
ENSCAFG00000001600	CPSF1	99	87.798	ENSCPBG00000018910	CPSF1	93	87.798	Chrysemys_picta_bellii
ENSCAFG00000001600	CPSF1	95	47.839	ENSCING00000000514	-	96	47.765	Ciona_intestinalis
ENSCAFG00000001600	CPSF1	99	47.909	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSCAFG00000001600	CPSF1	100	91.975	ENSCANG00000032760	CPSF1	97	92.632	Colobus_angolensis_palliatus
ENSCAFG00000001600	CPSF1	100	96.116	ENSCGRG00001016344	Cpsf1	97	95.994	Cricetulus_griseus_chok1gshd
ENSCAFG00000001600	CPSF1	100	93.562	ENSCGRG00000003118	Cpsf1	97	93.777	Cricetulus_griseus_crigri
ENSCAFG00000001600	CPSF1	100	78.468	ENSCSEG00000013464	cpsf1	99	77.511	Cynoglossus_semilaevis
ENSCAFG00000001600	CPSF1	100	77.708	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSCAFG00000001600	CPSF1	100	79.230	ENSDARG00000034178	cpsf1	96	79.829	Danio_rerio
ENSCAFG00000001600	CPSF1	67	96.812	ENSDNOG00000043654	CPSF1	89	96.812	Dasypus_novemcinctus
ENSCAFG00000001600	CPSF1	100	96.116	ENSDORG00000006278	Cpsf1	99	95.991	Dipodomys_ordii
ENSCAFG00000001600	CPSF1	99	45.320	FBgn0024698	Cpsf160	96	45.211	Drosophila_melanogaster
ENSCAFG00000001600	CPSF1	79	98.658	ENSETEG00000006022	CPSF1	79	98.658	Echinops_telfairi
ENSCAFG00000001600	CPSF1	100	98.284	ENSEASG00005010774	CPSF1	97	98.212	Equus_asinus_asinus
ENSCAFG00000001600	CPSF1	100	98.374	ENSECAG00000022209	CPSF1	97	98.212	Equus_caballus
ENSCAFG00000001600	CPSF1	100	95.578	ENSEEUG00000000471	CPSF1	96	96.179	Erinaceus_europaeus
ENSCAFG00000001600	CPSF1	100	77.867	ENSELUG00000012271	cpsf1	100	78.658	Esox_lucius
ENSCAFG00000001600	CPSF1	100	96.838	ENSFDAG00000016060	CPSF1	97	96.495	Fukomys_damarensis
ENSCAFG00000001600	CPSF1	100	76.813	ENSFHEG00000016801	cpsf1	96	77.477	Fundulus_heteroclitus
ENSCAFG00000001600	CPSF1	100	78.047	ENSGMOG00000000796	cpsf1	97	78.267	Gadus_morhua
ENSCAFG00000001600	CPSF1	94	83.929	ENSGAFG00000018890	cpsf1	96	83.929	Gambusia_affinis
ENSCAFG00000001600	CPSF1	100	78.731	ENSGACG00000008703	cpsf1	100	76.000	Gasterosteus_aculeatus
ENSCAFG00000001600	CPSF1	100	84.046	ENSGAGG00000004276	CPSF1	98	88.245	Gopherus_agassizii
ENSCAFG00000001600	CPSF1	100	96.838	ENSGGOG00000016185	CPSF1	97	96.423	Gorilla_gorilla
ENSCAFG00000001600	CPSF1	100	79.730	ENSHBUG00000018900	cpsf1	96	79.728	Haplochromis_burtoni
ENSCAFG00000001600	CPSF1	100	96.838	ENSHGLG00000016139	CPSF1	96	96.770	Heterocephalus_glaber_female
ENSCAFG00000001600	CPSF1	100	96.748	ENSHGLG00100009750	CPSF1	96	96.698	Heterocephalus_glaber_male
ENSCAFG00000001600	CPSF1	100	76.558	ENSHCOG00000018509	cpsf1	97	77.231	Hippocampus_comes
ENSCAFG00000001600	CPSF1	99	76.918	ENSIPUG00000011259	cpsf1	97	76.454	Ictalurus_punctatus
ENSCAFG00000001600	CPSF1	100	96.306	ENSSTOG00000009957	CPSF1	99	96.220	Ictidomys_tridecemlineatus
ENSCAFG00000001600	CPSF1	100	95.935	ENSJJAG00000023002	Cpsf1	97	95.780	Jaculus_jaculus
ENSCAFG00000001600	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	96	85.580	Kryptolebias_marmoratus
ENSCAFG00000001600	CPSF1	100	78.257	ENSLBEG00000003601	cpsf1	97	77.894	Labrus_bergylta
ENSCAFG00000001600	CPSF1	87	81.731	ENSLACG00000000233	CPSF1	97	68.839	Latimeria_chalumnae
ENSCAFG00000001600	CPSF1	99	77.778	ENSLOCG00000008484	cpsf1	97	77.920	Lepisosteus_oculatus
ENSCAFG00000001600	CPSF1	100	96.116	ENSLAFG00000022601	CPSF1	100	96.206	Loxodonta_africana
ENSCAFG00000001600	CPSF1	100	96.480	ENSMFAG00000037013	CPSF1	97	96.140	Macaca_fascicularis
ENSCAFG00000001600	CPSF1	100	96.480	ENSMMUG00000007380	CPSF1	97	96.212	Macaca_mulatta
ENSCAFG00000001600	CPSF1	100	96.570	ENSMNEG00000043564	CPSF1	100	96.421	Macaca_nemestrina
ENSCAFG00000001600	CPSF1	100	96.480	ENSMLEG00000043010	CPSF1	97	96.140	Mandrillus_leucophaeus
ENSCAFG00000001600	CPSF1	100	77.700	ENSMAMG00000003803	cpsf1	99	78.606	Mastacembelus_armatus
ENSCAFG00000001600	CPSF1	100	77.748	ENSMZEG00005001168	cpsf1	97	78.412	Maylandia_zebra
ENSCAFG00000001600	CPSF1	100	96.025	ENSMAUG00000003601	Cpsf1	97	95.851	Mesocricetus_auratus
ENSCAFG00000001600	CPSF1	100	97.651	ENSMICG00000015767	CPSF1	97	97.139	Microcebus_murinus
ENSCAFG00000001600	CPSF1	100	96.206	ENSMOCG00000022758	Cpsf1	97	95.923	Microtus_ochrogaster
ENSCAFG00000001600	CPSF1	100	79.028	ENSMMOG00000021245	cpsf1	96	79.298	Mola_mola
ENSCAFG00000001600	CPSF1	100	94.155	ENSMODG00000010755	CPSF1	97	93.585	Monodelphis_domestica
ENSCAFG00000001600	CPSF1	100	77.515	ENSMALG00000020545	cpsf1	97	78.307	Monopterus_albus
ENSCAFG00000001600	CPSF1	100	96.477	MGP_CAROLIEiJ_G0019936	Cpsf1	97	96.352	Mus_caroli
ENSCAFG00000001600	CPSF1	100	96.387	ENSMUSG00000034022	Cpsf1	97	96.280	Mus_musculus
ENSCAFG00000001600	CPSF1	100	96.477	MGP_PahariEiJ_G0019946	Cpsf1	97	96.352	Mus_pahari
ENSCAFG00000001600	CPSF1	100	96.387	MGP_SPRETEiJ_G0020839	Cpsf1	97	96.280	Mus_spretus
ENSCAFG00000001600	CPSF1	99	97.255	ENSMPUG00000006419	CPSF1	93	97.480	Mustela_putorius_furo
ENSCAFG00000001600	CPSF1	100	95.845	ENSNGAG00000022460	Cpsf1	97	95.780	Nannospalax_galili
ENSCAFG00000001600	CPSF1	100	74.304	ENSNBRG00000000813	cpsf1	96	76.139	Neolamprologus_brichardi
ENSCAFG00000001600	CPSF1	85	83.282	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSCAFG00000001600	CPSF1	85	98.837	ENSMEUG00000014922	CPSF1	85	98.837	Notamacropus_eugenii
ENSCAFG00000001600	CPSF1	68	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSCAFG00000001600	CPSF1	100	97.019	ENSODEG00000013995	CPSF1	97	96.710	Octodon_degus
ENSCAFG00000001600	CPSF1	100	80.360	ENSONIG00000007676	cpsf1	96	80.086	Oreochromis_niloticus
ENSCAFG00000001600	CPSF1	62	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSCAFG00000001600	CPSF1	100	77.465	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSCAFG00000001600	CPSF1	99	78.597	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSCAFG00000001600	CPSF1	99	78.541	ENSORLG00015009979	cpsf1	96	78.129	Oryzias_latipes_hsok
ENSCAFG00000001600	CPSF1	99	78.282	ENSOMEG00000011849	cpsf1	96	78.013	Oryzias_melastigma
ENSCAFG00000001600	CPSF1	100	97.022	ENSOGAG00000000315	CPSF1	96	96.987	Otolemur_garnettii
ENSCAFG00000001600	CPSF1	100	96.751	ENSPPAG00000019280	CPSF1	97	96.426	Pan_paniscus
ENSCAFG00000001600	CPSF1	100	96.751	ENSPTRG00000049288	-	97	96.426	Pan_troglodytes
ENSCAFG00000001600	CPSF1	100	94.733	ENSPTRG00000051253	-	97	94.733	Pan_troglodytes
ENSCAFG00000001600	CPSF1	100	96.480	ENSPANG00000015005	CPSF1	100	96.278	Papio_anubis
ENSCAFG00000001600	CPSF1	100	80.648	ENSPKIG00000002582	cpsf1	100	80.425	Paramormyrops_kingsleyae
ENSCAFG00000001600	CPSF1	100	94.155	ENSPCIG00000009035	CPSF1	97	93.514	Phascolarctos_cinereus
ENSCAFG00000001600	CPSF1	100	76.290	ENSPFOG00000012870	cpsf1	97	76.907	Poecilia_formosa
ENSCAFG00000001600	CPSF1	100	76.399	ENSPREG00000016307	cpsf1	97	76.853	Poecilia_reticulata
ENSCAFG00000001600	CPSF1	100	92.419	ENSPPYG00000018973	CPSF1	97	87.848	Pongo_abelii
ENSCAFG00000001600	CPSF1	94	95.455	ENSPCAG00000011541	CPSF1	94	95.455	Procavia_capensis
ENSCAFG00000001600	CPSF1	100	92.852	ENSPCOG00000020001	CPSF1	97	92.852	Propithecus_coquereli
ENSCAFG00000001600	CPSF1	90	99.429	ENSPVAG00000006761	CPSF1	88	99.429	Pteropus_vampyrus
ENSCAFG00000001600	CPSF1	100	79.910	ENSPNYG00000004906	cpsf1	99	78.773	Pundamilia_nyererei
ENSCAFG00000001600	CPSF1	99	75.865	ENSPNAG00000024395	cpsf1	96	75.865	Pygocentrus_nattereri
ENSCAFG00000001600	CPSF1	100	96.206	ENSRNOG00000030705	Cpsf1	97	96.137	Rattus_norvegicus
ENSCAFG00000001600	CPSF1	100	96.480	ENSRBIG00000044907	CPSF1	97	96.212	Rhinopithecus_bieti
ENSCAFG00000001600	CPSF1	100	96.390	ENSRROG00000044861	CPSF1	97	96.140	Rhinopithecus_roxellana
ENSCAFG00000001600	CPSF1	100	96.480	ENSSBOG00000027177	CPSF1	100	96.206	Saimiri_boliviensis_boliviensis
ENSCAFG00000001600	CPSF1	100	93.975	ENSSHAG00000006500	CPSF1	97	93.443	Sarcophilus_harrisii
ENSCAFG00000001600	CPSF1	100	80.143	ENSSFOG00015004606	cpsf1	100	80.859	Scleropages_formosus
ENSCAFG00000001600	CPSF1	100	78.040	ENSSMAG00000020547	cpsf1	97	78.866	Scophthalmus_maximus
ENSCAFG00000001600	CPSF1	100	79.317	ENSSDUG00000001100	cpsf1	96	80.101	Seriola_dumerili
ENSCAFG00000001600	CPSF1	100	79.478	ENSSLDG00000003619	cpsf1	96	80.303	Seriola_lalandi_dorsalis
ENSCAFG00000001600	CPSF1	96	92.750	ENSSARG00000003643	CPSF1	88	93.371	Sorex_araneus
ENSCAFG00000001600	CPSF1	100	87.939	ENSSPUG00000014396	CPSF1	99	88.223	Sphenodon_punctatus
ENSCAFG00000001600	CPSF1	100	77.710	ENSSPAG00000005349	cpsf1	97	78.671	Stegastes_partitus
ENSCAFG00000001600	CPSF1	100	97.561	ENSSSCG00000005906	CPSF1	97	96.567	Sus_scrofa
ENSCAFG00000001600	CPSF1	99	78.175	ENSTRUG00000013134	cpsf1	99	78.105	Takifugu_rubripes
ENSCAFG00000001600	CPSF1	100	78.769	ENSTNIG00000014027	cpsf1	96	78.820	Tetraodon_nigroviridis
ENSCAFG00000001600	CPSF1	76	93.633	ENSTBEG00000001756	CPSF1	90	93.633	Tupaia_belangeri
ENSCAFG00000001600	CPSF1	90	97.927	ENSTTRG00000001937	CPSF1	87	97.927	Tursiops_truncatus
ENSCAFG00000001600	CPSF1	100	98.641	ENSUAMG00000006476	CPSF1	98	98.641	Ursus_americanus
ENSCAFG00000001600	CPSF1	100	77.948	ENSXCOG00000003608	cpsf1	96	78.716	Xiphophorus_couchianus
ENSCAFG00000001600	CPSF1	100	77.628	ENSXMAG00000005798	cpsf1	96	78.098	Xiphophorus_maculatus