EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000001788 (Gene tree)
Gene ID: 481291
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 28212 bases
Position: chr10:31071859-31100070
Accession: 44949
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000040587	zf-C2H2	PF00096.26	2.7e-19	1	2
ENSCAFP00000040587	zf-C2H2	PF00096.26	2.7e-19	2	2
ENSCAFP00000002598	zf-C2H2	PF00096.26	2.8e-19	1	2
ENSCAFP00000002598	zf-C2H2	PF00096.26	2.8e-19	2	2
ENSCAFP00000002598	zf-met	PF12874.7	7.5e-05	1	1
ENSCAFP00000040587	zf-met	PF12874.7	7.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000002803	-	2406	-	ENSCAFP00000002598	801 (aa)	-	E2RCD5
ENSCAFT00000045926	-	4316	XM_014117387	ENSCAFP00000040587	801 (aa)	XP_013972862	J9NSP7

Gene Model

Click here to download ENSCAFG00000001788's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000001788's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000001788	PRDM4	54	33.471	ENSCAFG00000010223	PRDM15	58	33.471

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000001788	PRDM4	100	97.378	ENSG00000110851	PRDM4	100	98.667	Homo_sapiens
ENSCAFG00000001788	PRDM4	100	98.005	ENSAMEG00000016174	PRDM4	100	98.005	Ailuropoda_melanoleuca
ENSCAFG00000001788	PRDM4	99	88.095	ENSAPLG00000009846	PRDM4	99	87.594	Anas_platyrhynchos
ENSCAFG00000001788	PRDM4	100	97.253	ENSANAG00000024800	PRDM4	100	97.253	Aotus_nancymaae
ENSCAFG00000001788	PRDM4	100	97.878	ENSBTAG00000012999	PRDM4	100	97.878	Bos_taurus
ENSCAFG00000001788	PRDM4	100	97.004	ENSCJAG00000015261	PRDM4	100	97.004	Callithrix_jacchus
ENSCAFG00000001788	PRDM4	100	100.000	ENSCAFG00020004916	PRDM4	100	100.000	Canis_lupus_dingo
ENSCAFG00000001788	PRDM4	100	97.628	ENSCHIG00000019409	PRDM4	100	97.628	Capra_hircus
ENSCAFG00000001788	PRDM4	100	97.503	ENSTSYG00000009248	PRDM4	100	97.503	Carlito_syrichta
ENSCAFG00000001788	PRDM4	99	90.989	ENSCAPG00000013937	PRDM4	99	91.489	Cavia_aperea
ENSCAFG00000001788	PRDM4	99	90.932	ENSCPOG00000022385	PRDM4	100	90.932	Cavia_porcellus
ENSCAFG00000001788	PRDM4	100	97.378	ENSCCAG00000036033	PRDM4	100	97.378	Cebus_capucinus
ENSCAFG00000001788	PRDM4	100	97.004	ENSCATG00000044797	PRDM4	100	97.004	Cercocebus_atys
ENSCAFG00000001788	PRDM4	99	93.159	ENSCLAG00000007545	PRDM4	100	93.408	Chinchilla_lanigera
ENSCAFG00000001788	PRDM4	100	97.253	ENSCSAG00000002896	PRDM4	100	97.253	Chlorocebus_sabaeus
ENSCAFG00000001788	PRDM4	71	97.273	ENSCHOG00000001744	PRDM4	86	97.273	Choloepus_hoffmanni
ENSCAFG00000001788	PRDM4	99	88.833	ENSCPBG00000023187	PRDM4	100	88.331	Chrysemys_picta_bellii
ENSCAFG00000001788	PRDM4	100	97.129	ENSCANG00000021804	PRDM4	100	97.129	Colobus_angolensis_palliatus
ENSCAFG00000001788	PRDM4	99	92.537	ENSCGRG00001015102	-	100	92.289	Cricetulus_griseus_chok1gshd
ENSCAFG00000001788	PRDM4	96	92.516	ENSCGRG00000004044	-	100	92.258	Cricetulus_griseus_crigri
ENSCAFG00000001788	PRDM4	100	96.380	ENSDNOG00000032478	PRDM4	100	96.418	Dasypus_novemcinctus
ENSCAFG00000001788	PRDM4	99	81.179	ENSDORG00000015081	-	100	81.305	Dipodomys_ordii
ENSCAFG00000001788	PRDM4	93	45.938	ENSEBUG00000003775	prdm4	99	46.335	Eptatretus_burgeri
ENSCAFG00000001788	PRDM4	100	98.002	ENSECAG00000015423	PRDM4	100	98.002	Equus_caballus
ENSCAFG00000001788	PRDM4	94	93.475	ENSEEUG00000006569	PRDM4	99	93.209	Erinaceus_europaeus
ENSCAFG00000001788	PRDM4	99	60.510	ENSELUG00000015265	prdm4	93	62.078	Esox_lucius
ENSCAFG00000001788	PRDM4	100	99.001	ENSFCAG00000022478	PRDM4	100	99.001	Felis_catus
ENSCAFG00000001788	PRDM4	99	88.206	ENSFALG00000013342	PRDM4	100	87.829	Ficedula_albicollis
ENSCAFG00000001788	PRDM4	100	87.796	ENSGALG00000012619	PRDM4	100	87.298	Gallus_gallus
ENSCAFG00000001788	PRDM4	100	87.890	ENSGAGG00000002763	PRDM4	95	87.970	Gopherus_agassizii
ENSCAFG00000001788	PRDM4	99	97.250	ENSGGOG00000001244	PRDM4	99	97.250	Gorilla_gorilla
ENSCAFG00000001788	PRDM4	99	93.977	ENSHGLG00000004590	PRDM4	98	93.601	Heterocephalus_glaber_female
ENSCAFG00000001788	PRDM4	99	92.919	ENSHGLG00100007464	PRDM4	100	92.547	Heterocephalus_glaber_male
ENSCAFG00000001788	PRDM4	95	60.751	ENSIPUG00000024162	prdm4	93	61.097	Ictalurus_punctatus
ENSCAFG00000001788	PRDM4	100	96.879	ENSSTOG00000016168	PRDM4	100	96.879	Ictidomys_tridecemlineatus
ENSCAFG00000001788	PRDM4	82	93.011	ENSJJAG00000022448	-	95	93.243	Jaculus_jaculus
ENSCAFG00000001788	PRDM4	99	73.144	ENSLACG00000007452	PRDM4	99	73.886	Latimeria_chalumnae
ENSCAFG00000001788	PRDM4	78	53.247	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
ENSCAFG00000001788	PRDM4	98	97.208	ENSLAFG00000001483	PRDM4	100	97.208	Loxodonta_africana
ENSCAFG00000001788	PRDM4	100	97.378	ENSMFAG00000041862	PRDM4	100	97.378	Macaca_fascicularis
ENSCAFG00000001788	PRDM4	100	97.378	ENSMMUG00000015550	PRDM4	100	97.378	Macaca_mulatta
ENSCAFG00000001788	PRDM4	100	97.129	ENSMNEG00000032319	PRDM4	100	97.129	Macaca_nemestrina
ENSCAFG00000001788	PRDM4	100	97.253	ENSMLEG00000039607	PRDM4	100	97.253	Mandrillus_leucophaeus
ENSCAFG00000001788	PRDM4	99	80.500	ENSMGAG00000012815	PRDM4	100	80.000	Meleagris_gallopavo
ENSCAFG00000001788	PRDM4	100	96.380	ENSMICG00000007807	PRDM4	100	96.380	Microcebus_murinus
ENSCAFG00000001788	PRDM4	100	93.009	ENSMOCG00000000753	Prdm4	99	93.233	Microtus_ochrogaster
ENSCAFG00000001788	PRDM4	99	94.103	ENSMUSG00000035529	Prdm4	100	93.852	Mus_musculus
ENSCAFG00000001788	PRDM4	99	93.726	MGP_PahariEiJ_G0031398	Prdm4	100	93.774	Mus_pahari
ENSCAFG00000001788	PRDM4	99	94.856	MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	Mus_spretus
ENSCAFG00000001788	PRDM4	100	91.925	ENSMPUG00000012238	PRDM4	100	91.925	Mustela_putorius_furo
ENSCAFG00000001788	PRDM4	100	96.879	ENSMLUG00000000767	PRDM4	100	96.879	Myotis_lucifugus
ENSCAFG00000001788	PRDM4	99	95.609	ENSNGAG00000018627	Prdm4	100	95.609	Nannospalax_galili
ENSCAFG00000001788	PRDM4	100	97.253	ENSNLEG00000006748	PRDM4	100	97.253	Nomascus_leucogenys
ENSCAFG00000001788	PRDM4	89	89.671	ENSMEUG00000004495	PRDM4	89	89.671	Notamacropus_eugenii
ENSCAFG00000001788	PRDM4	88	95.536	ENSOPRG00000010192	PRDM4	89	95.536	Ochotona_princeps
ENSCAFG00000001788	PRDM4	99	91.125	ENSODEG00000014750	PRDM4	99	91.000	Octodon_degus
ENSCAFG00000001788	PRDM4	100	91.011	ENSOANG00000005526	PRDM4	100	91.011	Ornithorhynchus_anatinus
ENSCAFG00000001788	PRDM4	93	97.282	ENSOCUG00000012859	PRDM4	96	97.282	Oryctolagus_cuniculus
ENSCAFG00000001788	PRDM4	99	97.616	ENSOGAG00000011945	PRDM4	100	97.616	Otolemur_garnettii
ENSCAFG00000001788	PRDM4	100	97.503	ENSOARG00000017955	PRDM4	100	97.503	Ovis_aries
ENSCAFG00000001788	PRDM4	100	97.378	ENSPPAG00000038438	PRDM4	100	97.378	Pan_paniscus
ENSCAFG00000001788	PRDM4	100	99.001	ENSPPRG00000004144	PRDM4	100	99.001	Panthera_pardus
ENSCAFG00000001788	PRDM4	100	99.001	ENSPTIG00000005847	PRDM4	100	99.001	Panthera_tigris_altaica
ENSCAFG00000001788	PRDM4	100	97.378	ENSPTRG00000005400	PRDM4	100	97.378	Pan_troglodytes
ENSCAFG00000001788	PRDM4	100	97.378	ENSPANG00000022084	PRDM4	100	97.378	Papio_anubis
ENSCAFG00000001788	PRDM4	99	60.285	ENSPKIG00000000875	prdm4	99	60.285	Paramormyrops_kingsleyae
ENSCAFG00000001788	PRDM4	91	81.939	ENSPSIG00000012066	PRDM4	100	81.939	Pelodiscus_sinensis
ENSCAFG00000001788	PRDM4	99	95.232	ENSPEMG00000014598	Prdm4	100	95.232	Peromyscus_maniculatus_bairdii
ENSCAFG00000001788	PRDM4	100	89.303	ENSPCIG00000009471	PRDM4	100	89.303	Phascolarctos_cinereus
ENSCAFG00000001788	PRDM4	100	97.503	ENSPPYG00000004913	PRDM4	100	97.503	Pongo_abelii
ENSCAFG00000001788	PRDM4	83	97.917	ENSPCAG00000009987	PRDM4	83	97.917	Procavia_capensis
ENSCAFG00000001788	PRDM4	100	96.255	ENSPCOG00000021060	PRDM4	100	96.255	Propithecus_coquereli
ENSCAFG00000001788	PRDM4	100	97.257	ENSPVAG00000001596	PRDM4	100	97.257	Pteropus_vampyrus
ENSCAFG00000001788	PRDM4	99	93.985	ENSRNOG00000004962	Prdm4	100	93.609	Rattus_norvegicus
ENSCAFG00000001788	PRDM4	100	97.129	ENSRBIG00000035488	PRDM4	100	97.129	Rhinopithecus_bieti
ENSCAFG00000001788	PRDM4	100	97.253	ENSRROG00000012779	PRDM4	100	97.253	Rhinopithecus_roxellana
ENSCAFG00000001788	PRDM4	100	97.253	ENSSBOG00000000403	PRDM4	100	97.253	Saimiri_boliviensis_boliviensis
ENSCAFG00000001788	PRDM4	99	63.793	ENSSFOG00015023358	prdm4	99	63.255	Scleropages_formosus
ENSCAFG00000001788	PRDM4	100	98.002	ENSSSCG00000000160	PRDM4	100	98.002	Sus_scrofa
ENSCAFG00000001788	PRDM4	100	87.890	ENSTGUG00000010962	-	100	87.516	Taeniopygia_guttata
ENSCAFG00000001788	PRDM4	73	89.932	ENSTBEG00000001732	PRDM4	84	89.932	Tupaia_belangeri
ENSCAFG00000001788	PRDM4	100	97.129	ENSTTRG00000011056	PRDM4	100	97.129	Tursiops_truncatus
ENSCAFG00000001788	PRDM4	100	98.876	ENSUAMG00000022796	PRDM4	100	98.876	Ursus_americanus
ENSCAFG00000001788	PRDM4	100	98.876	ENSUMAG00000017231	PRDM4	100	98.876	Ursus_maritimus
ENSCAFG00000001788	PRDM4	99	97.992	ENSVPAG00000002215	PRDM4	100	97.992	Vicugna_pacos
ENSCAFG00000001788	PRDM4	100	100.000	ENSVVUG00000023397	PRDM4	100	100.000	Vulpes_vulpes