EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCAFG00000003081 (Gene tree)
Gene ID
607804
Gene Symbol
PABPC4
Alias
APP-1|iPABP
Full Name
hes related family bHLH transcription factor with YRPW motif-like
Gene Type
protein_coding
Species
Canis_familiaris
Status
putative
Strand
Plus strand
Length
62932 bases
Position
chr15:3242533-3305464
Accession
607804
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCAFP00000004589PABPPF00658.181.5e-3111
ENSCAFP00000004588PABPPF00658.181.9e-3111
ENSCAFP00000004589RRM_5PF13893.62.4e-0912
ENSCAFP00000004589RRM_5PF13893.62.4e-0922
ENSCAFP00000004588RRM_5PF13893.67.1e-0812
ENSCAFP00000004588RRM_5PF13893.67.1e-0822
ENSCAFP00000004589RRM_1PF00076.222.8e-9214
ENSCAFP00000004589RRM_1PF00076.222.8e-9224
ENSCAFP00000004589RRM_1PF00076.222.8e-9234
ENSCAFP00000004589RRM_1PF00076.222.8e-9244
ENSCAFP00000004588RRM_1PF00076.223.5e-7013
ENSCAFP00000004588RRM_1PF00076.223.5e-7023
ENSCAFP00000004588RRM_1PF00076.223.5e-7033
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCAFT00000004949PABPC4-2014652-ENSCAFP00000004588700 (aa)-E2R9I1
ENSCAFT00000004941PABPC4-202981XM_005628900ENSCAFP00000004580326 (aa)XP_849702E2R9J1
ENSCAFT00000004950PABPC4-2031896XM_005628901ENSCAFP00000004589631 (aa)XP_005628958E2R9I0
Gene Model
Click here to download ENSCAFG00000003081's gene model file
Pathways
Pathway IDPathway NameSource
cfa03013RNA transportKEGG
cfa03015mRNA surveillance pathwayKEGG
cfa03018RNA degradationKEGG
cfa05165Human papillomavirus infectionKEGG
cfa05200Pathways in cancerKEGG
cfa05224Breast cancerKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000003081's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCAFG00000003081PABPC45930.625ENSCAFG00000003927ELAVL49030.625
ENSCAFG00000003081PABPC45833.553ENSCAFG00000018353-9330.070
ENSCAFG00000003081PABPC49978.627ENSCAFG00000000567PABPC19978.471
ENSCAFG00000003081PABPC45733.010ENSCAFG00000014008MYEF26933.010
ENSCAFG00000003081PABPC49764.869ENSCAFG00000009573PABPC1L10063.889
ENSCAFG00000003081PABPC45867.697ENSCAFG00000017452PABPC59567.493
ENSCAFG00000003081PABPC45837.500ENSCAFG00000004973CELF25937.500
ENSCAFG00000003081PABPC45934.940ENSCAFG00000001688ELAVL28334.940
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCAFG00000003081PABPC410099.208ENSG00000090621PABPC4100100.000Homo_sapiens
ENSCAFG00000003081PABPC49983.043ENSAPOG00000001161pabpc410083.281Acanthochromis_polyacanthus
ENSCAFG00000003081PABPC49857.395ENSAMEG00000015083-9957.074Ailuropoda_melanoleuca
ENSCAFG00000003081PABPC410095.455ENSAMEG00000011535-99100.000Ailuropoda_melanoleuca
ENSCAFG00000003081PABPC410083.594ENSACIG00000023343pabpc410084.219Amphilophus_citrinellus
ENSCAFG00000003081PABPC49983.518ENSAOCG00000021529pabpc49990.838Amphiprion_ocellaris
ENSCAFG00000003081PABPC49983.518ENSAPEG00000019196pabpc410083.750Amphiprion_percula
ENSCAFG00000003081PABPC49982.622ENSATEG00000007402pabpc410082.071Anabas_testudineus
ENSCAFG00000003081PABPC49991.587ENSAPLG00000009729-10091.587Anas_platyrhynchos
ENSCAFG00000003081PABPC49989.982ENSACAG00000002544PABPC410089.982Anolis_carolinensis
ENSCAFG00000003081PABPC410099.049ENSANAG00000025079PABPC410099.049Aotus_nancymaae
ENSCAFG00000003081PABPC410083.125ENSACLG00000019558pabpc410083.204Astatotilapia_calliptera
ENSCAFG00000003081PABPC49979.081ENSAMXG00000018779pabpc49979.873Astyanax_mexicanus
ENSCAFG00000003081PABPC45786.826ENSBTAG00000048536-9293.269Bos_taurus
ENSCAFG00000003081PABPC410095.504ENSBTAG00000017125PABPC410095.504Bos_taurus
ENSCAFG00000003081PABPC410098.891ENSCJAG00000002512-10098.891Callithrix_jacchus
ENSCAFG00000003081PABPC47789.344ENSCJAG00000045953-9289.300Callithrix_jacchus
ENSCAFG00000003081PABPC496100.000ENSCAFG00020004161PABPC499100.000Canis_lupus_dingo
ENSCAFG00000003081PABPC410095.000ENSCHIG00000019398-9999.161Capra_hircus
ENSCAFG00000003081PABPC410075.466ENSCHIG00000023385-10075.466Capra_hircus
ENSCAFG00000003081PABPC410099.208ENSTSYG00000006532PABPC410099.208Carlito_syrichta
ENSCAFG00000003081PABPC49998.887ENSCAPG00000015984PABPC410098.887Cavia_aperea
ENSCAFG00000003081PABPC410098.891ENSCPOG00000009552PABPC410098.891Cavia_porcellus
ENSCAFG00000003081PABPC410099.049ENSCCAG00000037306PABPC410099.049Cebus_capucinus
ENSCAFG00000003081PABPC410099.366ENSCATG00000042164PABPC410099.366Cercocebus_atys
ENSCAFG00000003081PABPC410099.049ENSCLAG00000011899PABPC410099.049Chinchilla_lanigera
ENSCAFG00000003081PABPC410095.000ENSCSAG00000001135PABPC49999.161Chlorocebus_sabaeus
ENSCAFG00000003081PABPC48697.889ENSCHOG00000005327PABPC48197.889Choloepus_hoffmanni
ENSCAFG00000003081PABPC49991.905ENSCPBG00000001038PABPC410091.905Chrysemys_picta_bellii
ENSCAFG00000003081PABPC49999.196ENSCANG00000034177PABPC410099.196Colobus_angolensis_palliatus
ENSCAFG00000003081PABPC49995.498ENSCGRG00001018166Pabpc49997.000Cricetulus_griseus_chok1gshd
ENSCAFG00000003081PABPC49895.432ENSCGRG00000009777Pabpc410094.500Cricetulus_griseus_crigri
ENSCAFG00000003081PABPC410082.500ENSCSEG00000000130pabpc410083.125Cynoglossus_semilaevis
ENSCAFG00000003081PABPC49983.784ENSCVAG00000019246pabpc410083.861Cyprinodon_variegatus
ENSCAFG00000003081PABPC49985.079ENSDARG00000059259pabpc410085.855Danio_rerio
ENSCAFG00000003081PABPC49999.643ENSDNOG00000018444-10099.643Dasypus_novemcinctus
ENSCAFG00000003081PABPC410095.497ENSDORG00000011581Pabpc410095.497Dipodomys_ordii
ENSCAFG00000003081PABPC48665.000ENSETEG00000009172-9965.018Echinops_telfairi
ENSCAFG00000003081PABPC4100100.000ENSETEG00000018453-84100.000Echinops_telfairi
ENSCAFG00000003081PABPC49976.741ENSEBUG00000000992pabpc49878.697Eptatretus_burgeri
ENSCAFG00000003081PABPC49776.898ENSEBUG00000013782pabpc49976.266Eptatretus_burgeri
ENSCAFG00000003081PABPC410095.303ENSEASG00005014119PABPC49999.497Equus_asinus_asinus
ENSCAFG00000003081PABPC410095.303ENSECAG00000009396PABPC49999.497Equus_caballus
ENSCAFG00000003081PABPC410091.667ENSEEUG00000002962PABPC49995.470Erinaceus_europaeus
ENSCAFG00000003081PABPC49983.758ENSELUG00000003195pabpc49884.335Esox_lucius
ENSCAFG00000003081PABPC4100100.000ENSFCAG00000015254-100100.000Felis_catus
ENSCAFG00000003081PABPC49991.111ENSFALG00000000543PABPC410091.111Ficedula_albicollis
ENSCAFG00000003081PABPC410094.848ENSFDAG00000020016-9998.993Fukomys_damarensis
ENSCAFG00000003081PABPC49063.326ENSFDAG00000010581-10062.857Fukomys_damarensis
ENSCAFG00000003081PABPC410083.568ENSFHEG00000007548pabpc410083.645Fundulus_heteroclitus
ENSCAFG00000003081PABPC49982.808ENSGMOG00000019025pabpc49983.438Gadus_morhua
ENSCAFG00000003081PABPC49992.063ENSGALG00000003800PABPC410092.063Gallus_gallus
ENSCAFG00000003081PABPC410082.915ENSGAFG00000018195pabpc49896.000Gambusia_affinis
ENSCAFG00000003081PABPC410081.591ENSGACG00000007179pabpc410082.215Gasterosteus_aculeatus
ENSCAFG00000003081PABPC49991.746ENSGAGG00000001888PABPC410091.746Gopherus_agassizii
ENSCAFG00000003081PABPC410099.208ENSGGOG00000004002PABPC410099.208Gorilla_gorilla
ENSCAFG00000003081PABPC410083.281ENSHBUG00000020206pabpc410083.359Haplochromis_burtoni
ENSCAFG00000003081PABPC410099.366ENSHGLG00000011162PABPC410099.366Heterocephalus_glaber_female
ENSCAFG00000003081PABPC410099.366ENSHGLG00100001580PABPC410099.366Heterocephalus_glaber_male
ENSCAFG00000003081PABPC410082.160ENSHCOG00000012694pabpc410082.812Hippocampus_comes
ENSCAFG00000003081PABPC49883.307ENSIPUG00000016620pabpc49983.333Ictalurus_punctatus
ENSCAFG00000003081PABPC410096.830ENSSTOG00000010416PABPC410096.830Ictidomys_tridecemlineatus
ENSCAFG00000003081PABPC410093.012ENSJJAG00000007781Pabpc49994.295Jaculus_jaculus
ENSCAFG00000003081PABPC49982.677ENSKMAG00000013597pabpc49982.188Kryptolebias_marmoratus
ENSCAFG00000003081PABPC410082.426ENSLBEG00000013654pabpc410082.143Labrus_bergylta
ENSCAFG00000003081PABPC49988.170ENSLACG00000011907PABPC410088.170Latimeria_chalumnae
ENSCAFG00000003081PABPC49985.827ENSLOCG00000001877pabpc49986.614Lepisosteus_oculatus
ENSCAFG00000003081PABPC410097.147ENSLAFG00000000151PABPC49999.497Loxodonta_africana
ENSCAFG00000003081PABPC410099.366ENSMFAG00000041481PABPC410099.366Macaca_fascicularis
ENSCAFG00000003081PABPC410095.000ENSMMUG00000007497PABPC49999.161Macaca_mulatta
ENSCAFG00000003081PABPC410099.208ENSMNEG00000043054PABPC410099.208Macaca_nemestrina
ENSCAFG00000003081PABPC410099.366ENSMLEG00000040716PABPC410099.366Mandrillus_leucophaeus
ENSCAFG00000003081PABPC49982.884ENSMAMG00000010025pabpc49982.059Mastacembelus_armatus
ENSCAFG00000003081PABPC410082.969ENSMZEG00005006141pabpc410083.048Maylandia_zebra
ENSCAFG00000003081PABPC49988.075ENSMGAG00000005408PABPC410088.075Meleagris_gallopavo
ENSCAFG00000003081PABPC47795.413ENSMAUG00000019763-8495.413Mesocricetus_auratus
ENSCAFG00000003081PABPC45781.287ENSMAUG00000004089-9281.287Mesocricetus_auratus
ENSCAFG00000003081PABPC47289.423ENSMAUG00000001295-9789.423Mesocricetus_auratus
ENSCAFG00000003081PABPC49984.725ENSMICG00000036729-10085.258Microcebus_murinus
ENSCAFG00000003081PABPC48996.441ENSMICG00000016633-10096.441Microcebus_murinus
ENSCAFG00000003081PABPC410097.795ENSMOCG00000006763Pabpc410097.795Microtus_ochrogaster
ENSCAFG00000003081PABPC410080.503ENSMMOG00000002363pabpc49981.790Mola_mola
ENSCAFG00000003081PABPC49888.509ENSMODG00000017657-10088.110Monodelphis_domestica
ENSCAFG00000003081PABPC45974.011ENSMODG00000018051-9174.011Monodelphis_domestica
ENSCAFG00000003081PABPC49982.780ENSMALG00000011017pabpc410082.481Monopterus_albus
ENSCAFG00000003081PABPC410093.333MGP_CAROLIEiJ_G0026435-100100.000Mus_caroli
ENSCAFG00000003081PABPC49983.096MGP_CAROLIEiJ_G0024864-10083.729Mus_caroli
ENSCAFG00000003081PABPC410098.098ENSMUSG00000011257Pabpc410099.405Mus_musculus
ENSCAFG00000003081PABPC49993.395MGP_PahariEiJ_G0028765Pabpc4100100.000Mus_pahari
ENSCAFG00000003081PABPC49974.680MGP_SPRETEiJ_G0027415Pabpc410099.291Mus_spretus
ENSCAFG00000003081PABPC410095.606ENSMPUG00000014414-9999.832Mustela_putorius_furo
ENSCAFG00000003081PABPC49553.477ENSMPUG00000006836-10053.311Mustela_putorius_furo
ENSCAFG00000003081PABPC410096.830ENSMLUG00000012068PABPC410096.830Myotis_lucifugus
ENSCAFG00000003081PABPC410096.830ENSNGAG00000018292Pabpc410096.830Nannospalax_galili
ENSCAFG00000003081PABPC46786.441ENSNBRG00000010047-7289.881Neolamprologus_brichardi
ENSCAFG00000003081PABPC45992.788ENSNBRG00000009708pabpc49892.788Neolamprologus_brichardi
ENSCAFG00000003081PABPC410099.366ENSNLEG00000011928PABPC410099.366Nomascus_leucogenys
ENSCAFG00000003081PABPC48598.737ENSOPRG00000011984PABPC48798.737Ochotona_princeps
ENSCAFG00000003081PABPC45385.714ENSODEG00000013457-10085.714Octodon_degus
ENSCAFG00000003081PABPC410098.574ENSODEG00000006592-10098.574Octodon_degus
ENSCAFG00000003081PABPC49988.000ENSODEG00000017434-10089.409Octodon_degus
ENSCAFG00000003081PABPC410083.281ENSONIG00000008176pabpc410083.906Oreochromis_niloticus
ENSCAFG00000003081PABPC49991.429ENSOANG00000010001PABPC410091.429Ornithorhynchus_anatinus
ENSCAFG00000003081PABPC49694.462ENSOCUG00000000562PABPC48898.768Oryctolagus_cuniculus
ENSCAFG00000003081PABPC49991.049ENSORLG00000017479pabpc49991.049Oryzias_latipes
ENSCAFG00000003081PABPC49991.049ENSORLG00020018644pabpc49991.049Oryzias_latipes_hni
ENSCAFG00000003081PABPC49991.049ENSORLG00015015042pabpc49991.049Oryzias_latipes_hsok
ENSCAFG00000003081PABPC49983.201ENSOMEG00000014410pabpc49983.648Oryzias_melastigma
ENSCAFG00000003081PABPC410095.518ENSOGAG00000004067PABPC410095.518Otolemur_garnettii
ENSCAFG00000003081PABPC410095.000ENSOARG00000020060PABPC49999.161Ovis_aries
ENSCAFG00000003081PABPC410099.208ENSPPAG00000043625PABPC410099.208Pan_paniscus
ENSCAFG00000003081PABPC4100100.000ENSPPRG00000024727PABPC4100100.000Panthera_pardus
ENSCAFG00000003081PABPC4100100.000ENSPTIG00000005829PABPC4100100.000Panthera_tigris_altaica
ENSCAFG00000003081PABPC410099.208ENSPTRG00000000573PABPC410099.208Pan_troglodytes
ENSCAFG00000003081PABPC410099.525ENSPANG00000009484PABPC410099.525Papio_anubis
ENSCAFG00000003081PABPC49984.968ENSPKIG00000025356pabpc49985.601Paramormyrops_kingsleyae
ENSCAFG00000003081PABPC49991.905ENSPSIG00000016892PABPC410091.905Pelodiscus_sinensis
ENSCAFG00000003081PABPC410081.732ENSPMGG00000009073pabpc49980.818Periophthalmus_magnuspinnatus
ENSCAFG00000003081PABPC410091.181ENSPEMG00000024193-9991.181Peromyscus_maniculatus_bairdii
ENSCAFG00000003081PABPC410097.306ENSPEMG00000023569-9997.306Peromyscus_maniculatus_bairdii
ENSCAFG00000003081PABPC48973.657ENSPMAG00000002836pabpc410074.177Petromyzon_marinus
ENSCAFG00000003081PABPC49571.107ENSPMAG00000007885pabpc410069.625Petromyzon_marinus
ENSCAFG00000003081PABPC49794.033ENSPCIG00000020674PABPC410094.033Phascolarctos_cinereus
ENSCAFG00000003081PABPC410082.942ENSPFOG00000002682pabpc410084.038Poecilia_formosa
ENSCAFG00000003081PABPC410082.786ENSPLAG00000010112pabpc410083.333Poecilia_latipinna
ENSCAFG00000003081PABPC49983.466ENSPMEG00000019739pabpc410084.194Poecilia_mexicana
ENSCAFG00000003081PABPC410083.255ENSPREG00000001589pabpc410083.333Poecilia_reticulata
ENSCAFG00000003081PABPC410094.848ENSPPYG00000001506PABPC49998.993Pongo_abelii
ENSCAFG00000003081PABPC410090.303ENSPCAG00000003341PABPC49993.960Procavia_capensis
ENSCAFG00000003081PABPC410099.367ENSPCOG00000023725-10099.367Propithecus_coquereli
ENSCAFG00000003081PABPC49978.735ENSPCOG00000025882-9594.059Propithecus_coquereli
ENSCAFG00000003081PABPC49994.286ENSPVAG00000002187PABPC410098.992Pteropus_vampyrus
ENSCAFG00000003081PABPC410083.125ENSPNYG00000006134pabpc410083.204Pundamilia_nyererei
ENSCAFG00000003081PABPC410083.255ENSPNAG00000024355pabpc410083.956Pygocentrus_nattereri
ENSCAFG00000003081PABPC410092.236ENSRNOG00000028592AABR07035074.19993.289Rattus_norvegicus
ENSCAFG00000003081PABPC410094.410ENSRNOG00000015642Pabpc410094.410Rattus_norvegicus
ENSCAFG00000003081PABPC410099.366ENSRBIG00000039761PABPC410099.366Rhinopithecus_bieti
ENSCAFG00000003081PABPC410099.366ENSRROG00000033355PABPC410099.366Rhinopithecus_roxellana
ENSCAFG00000003081PABPC410099.208ENSSBOG00000026193PABPC410099.208Saimiri_boliviensis_boliviensis
ENSCAFG00000003081PABPC49892.395ENSSHAG00000018139PABPC410091.905Sarcophilus_harrisii
ENSCAFG00000003081PABPC49985.878ENSSFOG00015023514pabpc49985.878Scleropages_formosus
ENSCAFG00000003081PABPC49982.437ENSSMAG00000009007pabpc49982.104Scophthalmus_maximus
ENSCAFG00000003081PABPC49982.726ENSSDUG00000012683pabpc410082.969Seriola_dumerili
ENSCAFG00000003081PABPC49982.726ENSSLDG00000013025pabpc410082.969Seriola_lalandi_dorsalis
ENSCAFG00000003081PABPC410087.576ENSSARG00000000310PABPC49497.983Sorex_araneus
ENSCAFG00000003081PABPC49990.159ENSSPUG00000003204PABPC410090.159Sphenodon_punctatus
ENSCAFG00000003081PABPC49983.043ENSSPAG00000009252pabpc49983.176Stegastes_partitus
ENSCAFG00000003081PABPC48949.481ENSSSCG00000036170-9650.673Sus_scrofa
ENSCAFG00000003081PABPC410099.525ENSSSCG00000003660-10099.525Sus_scrofa
ENSCAFG00000003081PABPC49986.687ENSTGUG00000001266PABPC410086.687Taeniopygia_guttata
ENSCAFG00000003081PABPC410082.233ENSTRUG00000005907pabpc49982.862Takifugu_rubripes
ENSCAFG00000003081PABPC410078.391ENSTNIG00000016902pabpc49978.391Tetraodon_nigroviridis
ENSCAFG00000003081PABPC49983.866ENSTBEG00000009035PABPC410088.067Tupaia_belangeri
ENSCAFG00000003081PABPC49978.352ENSTTRG00000014340PABPC410087.395Tursiops_truncatus
ENSCAFG00000003081PABPC410099.842ENSUAMG00000000303PABPC410099.842Ursus_americanus
ENSCAFG00000003081PABPC49999.821ENSUMAG00000019585PABPC410099.830Ursus_maritimus
ENSCAFG00000003081PABPC48396.429ENSVPAG00000010041PABPC47796.429Vicugna_pacos
ENSCAFG00000003081PABPC4100100.000ENSVVUG00000005215PABPC4100100.000Vulpes_vulpes
ENSCAFG00000003081PABPC49983.333ENSXETG00000010946pabpc410083.333Xenopus_tropicalis
ENSCAFG00000003081PABPC46197.024ENSXETG00000027221-10097.024Xenopus_tropicalis
ENSCAFG00000003081PABPC49981.282ENSXCOG00000013190pabpc49690.094Xiphophorus_couchianus
ENSCAFG00000003081PABPC410083.099ENSXMAG00000019007pabpc410083.178Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us