EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000004839 (Gene tree)
Gene ID: 487130
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 103010 bases
Position: chr2:24370563-24473572
Accession: 48151
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000007238	Upf2	PF04050.14	9.5e-33	1	1
ENSCAFP00000007242	Upf2	PF04050.14	9.5e-33	1	1
ENSCAFP00000007238	MIF4G	PF02854.19	7.6e-76	1	3
ENSCAFP00000007238	MIF4G	PF02854.19	7.6e-76	2	3
ENSCAFP00000007238	MIF4G	PF02854.19	7.6e-76	3	3
ENSCAFP00000007242	MIF4G	PF02854.19	7.6e-76	1	3
ENSCAFP00000007242	MIF4G	PF02854.19	7.6e-76	2	3
ENSCAFP00000007242	MIF4G	PF02854.19	7.6e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000007809	-	5781	XM_005617142	ENSCAFP00000007238	1271 (aa)	XP_005617199	E2RLB0
ENSCAFT00000007814	-	3813	-	ENSCAFP00000007242	1271 (aa)	-	E2RL95

Gene Model

Click here to download ENSCAFG00000004839's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03013	RNA transport	KEGG
cfa03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000004839's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000004839	UPF2	100	97.720	ENSG00000151461	UPF2	100	97.720	Homo_sapiens
ENSCAFG00000004839	UPF2	99	79.013	ENSAPOG00000015837	UPF2	100	78.857	Acanthochromis_polyacanthus
ENSCAFG00000004839	UPF2	100	99.528	ENSAMEG00000004586	UPF2	100	99.528	Ailuropoda_melanoleuca
ENSCAFG00000004839	UPF2	99	82.969	ENSACIG00000018078	UPF2	100	82.891	Amphilophus_citrinellus
ENSCAFG00000004839	UPF2	100	83.151	ENSAOCG00000016766	UPF2	100	83.229	Amphiprion_ocellaris
ENSCAFG00000004839	UPF2	100	83.229	ENSAPEG00000019084	UPF2	100	83.307	Amphiprion_percula
ENSCAFG00000004839	UPF2	100	82.893	ENSATEG00000021677	UPF2	99	82.866	Anabas_testudineus
ENSCAFG00000004839	UPF2	100	87.186	ENSAPLG00000010287	UPF2	90	91.573	Anas_platyrhynchos
ENSCAFG00000004839	UPF2	100	92.683	ENSACAG00000009259	UPF2	100	92.683	Anolis_carolinensis
ENSCAFG00000004839	UPF2	99	87.657	ENSANAG00000028451	UPF2	99	86.399	Aotus_nancymaae
ENSCAFG00000004839	UPF2	100	81.357	ENSACLG00000012696	UPF2	100	83.151	Astatotilapia_calliptera
ENSCAFG00000004839	UPF2	99	83.333	ENSAMXG00000013700	UPF2	99	83.725	Astyanax_mexicanus
ENSCAFG00000004839	UPF2	100	99.135	ENSBTAG00000000288	UPF2	100	99.135	Bos_taurus
ENSCAFG00000004839	UPF2	100	97.720	ENSCJAG00000020685	UPF2	100	97.720	Callithrix_jacchus
ENSCAFG00000004839	UPF2	99	97.557	ENSCAFG00020005882	UPF2	98	99.802	Canis_lupus_dingo
ENSCAFG00000004839	UPF2	100	99.213	ENSCHIG00000020359	UPF2	100	99.213	Capra_hircus
ENSCAFG00000004839	UPF2	100	97.561	ENSTSYG00000000935	UPF2	100	97.561	Carlito_syrichta
ENSCAFG00000004839	UPF2	91	87.522	ENSCAPG00000016658	UPF2	94	87.058	Cavia_aperea
ENSCAFG00000004839	UPF2	99	96.114	ENSCPOG00000008809	UPF2	99	96.114	Cavia_porcellus
ENSCAFG00000004839	UPF2	100	91.424	ENSCCAG00000035991	UPF2	100	91.424	Cebus_capucinus
ENSCAFG00000004839	UPF2	100	97.877	ENSCATG00000032679	UPF2	100	97.877	Cercocebus_atys
ENSCAFG00000004839	UPF2	100	97.876	ENSCLAG00000011434	UPF2	100	97.876	Chinchilla_lanigera
ENSCAFG00000004839	UPF2	100	97.956	ENSCSAG00000013372	UPF2	100	97.956	Chlorocebus_sabaeus
ENSCAFG00000004839	UPF2	87	98.661	ENSCHOG00000000422	UPF2	89	98.661	Choloepus_hoffmanni
ENSCAFG00000004839	UPF2	99	92.277	ENSCPBG00000027823	UPF2	100	93.144	Chrysemys_picta_bellii
ENSCAFG00000004839	UPF2	79	48.963	ENSCSAVG00000007772	-	79	50.382	Ciona_savignyi
ENSCAFG00000004839	UPF2	99	91.484	ENSCANG00000040396	UPF2	100	92.132	Colobus_angolensis_palliatus
ENSCAFG00000004839	UPF2	100	98.269	ENSCGRG00001019347	Upf2	100	98.269	Cricetulus_griseus_chok1gshd
ENSCAFG00000004839	UPF2	100	98.269	ENSCGRG00000017993	Upf2	100	98.269	Cricetulus_griseus_crigri
ENSCAFG00000004839	UPF2	91	81.466	ENSCSEG00000003520	UPF2	91	80.739	Cynoglossus_semilaevis
ENSCAFG00000004839	UPF2	99	82.954	ENSCVAG00000006167	UPF2	100	82.482	Cyprinodon_variegatus
ENSCAFG00000004839	UPF2	100	98.741	ENSDNOG00000018160	UPF2	100	98.741	Dasypus_novemcinctus
ENSCAFG00000004839	UPF2	100	97.954	ENSDORG00000002478	Upf2	100	97.954	Dipodomys_ordii
ENSCAFG00000004839	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSCAFG00000004839	UPF2	69	68.657	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSCAFG00000004839	UPF2	100	98.741	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSCAFG00000004839	UPF2	100	98.820	ENSECAG00000017022	UPF2	100	98.820	Equus_caballus
ENSCAFG00000004839	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSCAFG00000004839	UPF2	99	81.861	ENSELUG00000012014	UPF2	100	82.271	Esox_lucius
ENSCAFG00000004839	UPF2	100	99.371	ENSFCAG00000005785	UPF2	100	99.371	Felis_catus
ENSCAFG00000004839	UPF2	100	94.099	ENSFALG00000001889	UPF2	98	94.099	Ficedula_albicollis
ENSCAFG00000004839	UPF2	100	97.561	ENSFDAG00000014348	UPF2	100	97.561	Fukomys_damarensis
ENSCAFG00000004839	UPF2	99	83.715	ENSFHEG00000009826	UPF2	99	83.373	Fundulus_heteroclitus
ENSCAFG00000004839	UPF2	91	83.765	ENSGMOG00000005557	UPF2	91	83.549	Gadus_morhua
ENSCAFG00000004839	UPF2	100	94.261	ENSGALG00000033772	UPF2	100	94.261	Gallus_gallus
ENSCAFG00000004839	UPF2	100	80.031	ENSGAFG00000020867	UPF2	100	82.059	Gambusia_affinis
ENSCAFG00000004839	UPF2	90	84.469	ENSGACG00000001080	UPF2	100	82.734	Gasterosteus_aculeatus
ENSCAFG00000004839	UPF2	100	93.627	ENSGAGG00000002700	UPF2	100	93.627	Gopherus_agassizii
ENSCAFG00000004839	UPF2	100	97.720	ENSGGOG00000001479	UPF2	100	97.720	Gorilla_gorilla
ENSCAFG00000004839	UPF2	100	81.201	ENSHBUG00000004249	UPF2	100	83.125	Haplochromis_burtoni
ENSCAFG00000004839	UPF2	100	97.876	ENSHGLG00000015176	-	100	97.876	Heterocephalus_glaber_female
ENSCAFG00000004839	UPF2	99	86.850	ENSHGLG00000003822	-	99	85.354	Heterocephalus_glaber_female
ENSCAFG00000004839	UPF2	99	94.641	ENSHGLG00100010036	UPF2	89	98.383	Heterocephalus_glaber_male
ENSCAFG00000004839	UPF2	100	80.963	ENSHCOG00000004025	UPF2	99	80.963	Hippocampus_comes
ENSCAFG00000004839	UPF2	100	82.137	ENSIPUG00000015524	UPF2	100	82.514	Ictalurus_punctatus
ENSCAFG00000004839	UPF2	100	98.112	ENSSTOG00000013075	UPF2	100	98.112	Ictidomys_tridecemlineatus
ENSCAFG00000004839	UPF2	100	97.010	ENSJJAG00000004913	Upf2	100	97.010	Jaculus_jaculus
ENSCAFG00000004839	UPF2	92	84.936	ENSKMAG00000001071	UPF2	99	82.964	Kryptolebias_marmoratus
ENSCAFG00000004839	UPF2	100	83.450	ENSLBEG00000016394	-	99	83.502	Labrus_bergylta
ENSCAFG00000004839	UPF2	80	83.104	ENSLBEG00000000728	-	93	83.202	Labrus_bergylta
ENSCAFG00000004839	UPF2	99	79.702	ENSLACG00000015945	UPF2	100	79.937	Latimeria_chalumnae
ENSCAFG00000004839	UPF2	99	86.761	ENSLOCG00000015698	UPF2	100	86.682	Lepisosteus_oculatus
ENSCAFG00000004839	UPF2	100	97.799	ENSMFAG00000043865	UPF2	100	97.799	Macaca_fascicularis
ENSCAFG00000004839	UPF2	100	97.799	ENSMMUG00000008241	UPF2	100	97.799	Macaca_mulatta
ENSCAFG00000004839	UPF2	81	97.073	ENSMNEG00000008062	UPF2	100	97.073	Macaca_nemestrina
ENSCAFG00000004839	UPF2	95	99.275	ENSMLEG00000036120	UPF2	100	99.275	Mandrillus_leucophaeus
ENSCAFG00000004839	UPF2	100	82.659	ENSMAMG00000018276	UPF2	100	82.788	Mastacembelus_armatus
ENSCAFG00000004839	UPF2	100	81.357	ENSMZEG00005021595	UPF2	100	83.151	Maylandia_zebra
ENSCAFG00000004839	UPF2	99	93.627	ENSMGAG00000004573	UPF2	99	93.627	Meleagris_gallopavo
ENSCAFG00000004839	UPF2	100	95.909	ENSMAUG00000016512	Upf2	100	95.909	Mesocricetus_auratus
ENSCAFG00000004839	UPF2	95	98.980	ENSMICG00000001716	UPF2	99	98.964	Microcebus_murinus
ENSCAFG00000004839	UPF2	100	97.168	ENSMOCG00000008263	Upf2	100	97.168	Microtus_ochrogaster
ENSCAFG00000004839	UPF2	90	83.203	ENSMMOG00000006528	UPF2	100	79.437	Mola_mola
ENSCAFG00000004839	UPF2	100	96.459	ENSMODG00000016794	UPF2	100	96.459	Monodelphis_domestica
ENSCAFG00000004839	UPF2	99	82.877	ENSMALG00000002663	UPF2	100	82.850	Monopterus_albus
ENSCAFG00000004839	UPF2	100	97.561	MGP_CAROLIEiJ_G0023157	Upf2	100	98.341	Mus_caroli
ENSCAFG00000004839	UPF2	100	97.561	ENSMUSG00000043241	Upf2	100	97.561	Mus_musculus
ENSCAFG00000004839	UPF2	100	97.168	MGP_PahariEiJ_G0019217	Upf2	100	97.333	Mus_pahari
ENSCAFG00000004839	UPF2	100	97.797	MGP_SPRETEiJ_G0024075	Upf2	100	97.797	Mus_spretus
ENSCAFG00000004839	UPF2	100	99.371	ENSMPUG00000001064	UPF2	100	99.371	Mustela_putorius_furo
ENSCAFG00000004839	UPF2	99	98.193	ENSMLUG00000000228	UPF2	100	98.193	Myotis_lucifugus
ENSCAFG00000004839	UPF2	100	81.357	ENSNBRG00000013629	UPF2	100	83.151	Neolamprologus_brichardi
ENSCAFG00000004839	UPF2	100	97.720	ENSNLEG00000012058	UPF2	100	97.720	Nomascus_leucogenys
ENSCAFG00000004839	UPF2	56	97.409	ENSMEUG00000002180	-	54	97.409	Notamacropus_eugenii
ENSCAFG00000004839	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSCAFG00000004839	UPF2	100	97.561	ENSODEG00000001290	UPF2	100	97.561	Octodon_degus
ENSCAFG00000004839	UPF2	100	81.435	ENSONIG00000017991	UPF2	100	83.229	Oreochromis_niloticus
ENSCAFG00000004839	UPF2	99	97.571	ENSOCUG00000006230	UPF2	100	97.571	Oryctolagus_cuniculus
ENSCAFG00000004839	UPF2	100	81.712	ENSORLG00000017189	UPF2	100	82.215	Oryzias_latipes
ENSCAFG00000004839	UPF2	100	81.712	ENSORLG00020005969	UPF2	100	82.215	Oryzias_latipes_hni
ENSCAFG00000004839	UPF2	100	81.712	ENSORLG00015005713	UPF2	100	82.215	Oryzias_latipes_hsok
ENSCAFG00000004839	UPF2	100	78.972	ENSOMEG00000023420	UPF2	98	79.359	Oryzias_melastigma
ENSCAFG00000004839	UPF2	100	97.797	ENSOGAG00000005796	UPF2	100	97.797	Otolemur_garnettii
ENSCAFG00000004839	UPF2	100	99.057	ENSOARG00000014587	UPF2	100	99.057	Ovis_aries
ENSCAFG00000004839	UPF2	99	93.745	ENSPPAG00000037953	UPF2	100	94.488	Pan_paniscus
ENSCAFG00000004839	UPF2	100	99.371	ENSPPRG00000000690	UPF2	100	99.371	Panthera_pardus
ENSCAFG00000004839	UPF2	100	99.371	ENSPTIG00000008867	UPF2	100	99.371	Panthera_tigris_altaica
ENSCAFG00000004839	UPF2	100	97.720	ENSPTRG00000002291	UPF2	100	97.720	Pan_troglodytes
ENSCAFG00000004839	UPF2	100	97.799	ENSPANG00000023399	UPF2	100	97.799	Papio_anubis
ENSCAFG00000004839	UPF2	100	82.137	ENSPKIG00000025502	UPF2	100	81.201	Paramormyrops_kingsleyae
ENSCAFG00000004839	UPF2	59	92.563	ENSPSIG00000015158	UPF2	95	92.563	Pelodiscus_sinensis
ENSCAFG00000004839	UPF2	99	80.518	ENSPMGG00000005259	UPF2	100	81.304	Periophthalmus_magnuspinnatus
ENSCAFG00000004839	UPF2	93	96.210	ENSPEMG00000015731	Upf2	99	96.210	Peromyscus_maniculatus_bairdii
ENSCAFG00000004839	UPF2	100	96.145	ENSPCIG00000006656	UPF2	100	96.145	Phascolarctos_cinereus
ENSCAFG00000004839	UPF2	100	80.187	ENSPFOG00000017118	UPF2	100	82.371	Poecilia_formosa
ENSCAFG00000004839	UPF2	100	80.187	ENSPLAG00000005094	UPF2	100	82.371	Poecilia_latipinna
ENSCAFG00000004839	UPF2	100	80.187	ENSPMEG00000017009	UPF2	100	82.371	Poecilia_mexicana
ENSCAFG00000004839	UPF2	99	80.188	ENSPREG00000021880	UPF2	100	82.537	Poecilia_reticulata
ENSCAFG00000004839	UPF2	66	98.923	ENSPPYG00000002089	-	100	98.923	Pongo_abelii
ENSCAFG00000004839	UPF2	100	84.579	ENSPCAG00000000684	UPF2	100	84.579	Procavia_capensis
ENSCAFG00000004839	UPF2	99	94.957	ENSPCOG00000021656	UPF2	100	95.035	Propithecus_coquereli
ENSCAFG00000004839	UPF2	100	91.274	ENSPVAG00000017286	UPF2	100	91.274	Pteropus_vampyrus
ENSCAFG00000004839	UPF2	99	78.906	ENSPNYG00000017096	UPF2	100	80.703	Pundamilia_nyererei
ENSCAFG00000004839	UPF2	100	83.541	ENSPNAG00000009357	UPF2	100	84.087	Pygocentrus_nattereri
ENSCAFG00000004839	UPF2	99	91.523	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSCAFG00000004839	UPF2	99	96.769	ENSRBIG00000037780	UPF2	100	96.769	Rhinopithecus_bieti
ENSCAFG00000004839	UPF2	100	97.720	ENSRROG00000043547	UPF2	100	97.720	Rhinopithecus_roxellana
ENSCAFG00000004839	UPF2	100	97.484	ENSSBOG00000020012	UPF2	100	97.484	Saimiri_boliviensis_boliviensis
ENSCAFG00000004839	UPF2	100	81.684	ENSSFOG00015023788	upf2	100	83.087	Scleropages_formosus
ENSCAFG00000004839	UPF2	90	83.088	ENSSMAG00000007637	UPF2	100	79.380	Scophthalmus_maximus
ENSCAFG00000004839	UPF2	100	83.151	ENSSDUG00000017244	UPF2	99	83.307	Seriola_dumerili
ENSCAFG00000004839	UPF2	99	81.441	ENSSLDG00000016866	UPF2	100	81.676	Seriola_lalandi_dorsalis
ENSCAFG00000004839	UPF2	100	96.302	ENSSARG00000008615	UPF2	100	96.302	Sorex_araneus
ENSCAFG00000004839	UPF2	99	90.866	ENSSPUG00000014544	UPF2	99	90.866	Sphenodon_punctatus
ENSCAFG00000004839	UPF2	68	98.964	ENSSSCG00000011117	-	100	98.964	Sus_scrofa
ENSCAFG00000004839	UPF2	99	94.085	ENSTGUG00000002163	-	100	94.085	Taeniopygia_guttata
ENSCAFG00000004839	UPF2	100	82.555	ENSTRUG00000007519	UPF2	99	82.527	Takifugu_rubripes
ENSCAFG00000004839	UPF2	93	90.517	ENSTBEG00000012679	UPF2	93	90.855	Tupaia_belangeri
ENSCAFG00000004839	UPF2	100	98.820	ENSTTRG00000016388	UPF2	100	98.820	Tursiops_truncatus
ENSCAFG00000004839	UPF2	94	99.527	ENSUAMG00000023560	UPF2	100	99.527	Ursus_americanus
ENSCAFG00000004839	UPF2	100	99.528	ENSUMAG00000012953	UPF2	95	99.528	Ursus_maritimus
ENSCAFG00000004839	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSCAFG00000004839	UPF2	100	99.921	ENSVVUG00000006166	UPF2	100	99.921	Vulpes_vulpes
ENSCAFG00000004839	UPF2	100	82.552	ENSXETG00000033103	UPF2	100	81.255	Xenopus_tropicalis
ENSCAFG00000004839	UPF2	92	84.530	ENSXCOG00000011604	UPF2	100	82.031	Xiphophorus_couchianus
ENSCAFG00000004839	UPF2	92	84.983	ENSXMAG00000017209	UPF2	100	82.059	Xiphophorus_maculatus