EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000005224 (Gene tree)
Gene ID: 483340
Gene Symbol: TNRC6C
Alias: -
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 101977 bases
Position: chr9:3020730-3122706
Accession: 47700
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000036839	Ago_hook	PF10427.9	2.6e-22	1	1
ENSCAFP00000007825	Ago_hook	PF10427.9	4e-22	1	1
ENSCAFP00000036839	RRM_1	PF00076.22	0.00012	1	1
ENSCAFP00000007825	RRM_1	PF00076.22	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000050041	-	5058	-	ENSCAFP00000036839	1685 (aa)	-	J9NUK0
ENSCAFT00000008443	-	5839	XM_003435150	ENSCAFP00000007825	1933 (aa)	XP_005624105	F1P8I7
ENSCAFT00000048770	-	2400	-	ENSCAFP00000040634	800 (aa)	-	J9P4W1

Gene Model

Click here to download ENSCAFG00000005224's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000005224's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000005224	TNRC6C	99	41.438	ENSCAFG00000001255	TNRC6B	99	41.376
ENSCAFG00000005224	TNRC6C	99	43.229	ENSCAFG00000017531	TNRC6A	98	42.731

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000005224	TNRC6C	99	91.264	ENSG00000078687	TNRC6C	100	91.667	Homo_sapiens
ENSCAFG00000005224	TNRC6C	78	51.225	ENSAPOG00000019749	tnrc6c1	95	57.158	Acanthochromis_polyacanthus
ENSCAFG00000005224	TNRC6C	100	89.900	ENSAMEG00000013756	TNRC6C	99	94.772	Ailuropoda_melanoleuca
ENSCAFG00000005224	TNRC6C	88	52.921	ENSACIG00000008075	tnrc6c1	79	54.290	Amphilophus_citrinellus
ENSCAFG00000005224	TNRC6C	74	63.664	ENSAOCG00000023968	tnrc6c1	95	58.787	Amphiprion_ocellaris
ENSCAFG00000005224	TNRC6C	78	50.207	ENSAPEG00000009020	tnrc6c1	95	58.787	Amphiprion_percula
ENSCAFG00000005224	TNRC6C	99	86.085	ENSAPLG00000005456	TNRC6C	100	86.092	Anas_platyrhynchos
ENSCAFG00000005224	TNRC6C	99	85.855	ENSACAG00000016198	TNRC6C	98	86.492	Anolis_carolinensis
ENSCAFG00000005224	TNRC6C	99	90.687	ENSANAG00000021554	TNRC6C	99	90.635	Aotus_nancymaae
ENSCAFG00000005224	TNRC6C	93	48.475	ENSACLG00000000424	tnrc6c1	98	53.184	Astatotilapia_calliptera
ENSCAFG00000005224	TNRC6C	96	92.193	ENSBTAG00000018658	TNRC6C	100	89.577	Bos_taurus
ENSCAFG00000005224	TNRC6C	99	90.739	ENSCJAG00000019431	TNRC6C	99	90.739	Callithrix_jacchus
ENSCAFG00000005224	TNRC6C	100	98.351	ENSCAFG00020006661	TNRC6C	100	98.351	Canis_lupus_dingo
ENSCAFG00000005224	TNRC6C	99	89.192	ENSCHIG00000026004	TNRC6C	98	89.297	Capra_hircus
ENSCAFG00000005224	TNRC6C	89	92.294	ENSTSYG00000005403	TNRC6C	100	92.236	Carlito_syrichta
ENSCAFG00000005224	TNRC6C	98	82.070	ENSCAPG00000007307	TNRC6C	99	82.408	Cavia_aperea
ENSCAFG00000005224	TNRC6C	99	87.141	ENSCPOG00000000467	TNRC6C	99	87.507	Cavia_porcellus
ENSCAFG00000005224	TNRC6C	99	91.103	ENSCCAG00000030524	TNRC6C	100	91.604	Cebus_capucinus
ENSCAFG00000005224	TNRC6C	99	90.999	ENSCATG00000033135	TNRC6C	100	91.488	Cercocebus_atys
ENSCAFG00000005224	TNRC6C	99	88.460	ENSCLAG00000011139	TNRC6C	99	88.500	Chinchilla_lanigera
ENSCAFG00000005224	TNRC6C	99	91.327	ENSCSAG00000005167	TNRC6C	99	91.327	Chlorocebus_sabaeus
ENSCAFG00000005224	TNRC6C	72	88.889	ENSCHOG00000000088	TNRC6C	75	86.555	Choloepus_hoffmanni
ENSCAFG00000005224	TNRC6C	92	86.049	ENSCPBG00000027960	TNRC6C	100	86.045	Chrysemys_picta_bellii
ENSCAFG00000005224	TNRC6C	99	90.791	ENSCANG00000041771	TNRC6C	100	91.257	Colobus_angolensis_palliatus
ENSCAFG00000005224	TNRC6C	99	86.056	ENSCGRG00001022686	Tnrc6c	100	85.706	Cricetulus_griseus_chok1gshd
ENSCAFG00000005224	TNRC6C	99	86.385	ENSCGRG00000018041	Tnrc6c	100	85.706	Cricetulus_griseus_crigri
ENSCAFG00000005224	TNRC6C	97	46.753	ENSCSEG00000012744	tnrc6c1	98	47.494	Cynoglossus_semilaevis
ENSCAFG00000005224	TNRC6C	99	64.367	ENSDARG00000076847	tnrc6c1	96	55.456	Danio_rerio
ENSCAFG00000005224	TNRC6C	99	88.349	ENSDNOG00000003247	TNRC6C	99	88.401	Dasypus_novemcinctus
ENSCAFG00000005224	TNRC6C	98	83.708	ENSDORG00000004558	Tnrc6c	100	84.141	Dipodomys_ordii
ENSCAFG00000005224	TNRC6C	89	74.229	ENSETEG00000005527	TNRC6C	90	79.275	Echinops_telfairi
ENSCAFG00000005224	TNRC6C	89	90.893	ENSEASG00005004799	TNRC6C	100	90.835	Equus_asinus_asinus
ENSCAFG00000005224	TNRC6C	99	92.602	ENSECAG00000012486	TNRC6C	99	92.602	Equus_caballus
ENSCAFG00000005224	TNRC6C	88	91.864	ENSEEUG00000010008	TNRC6C	96	91.864	Erinaceus_europaeus
ENSCAFG00000005224	TNRC6C	99	92.865	ENSFCAG00000028358	TNRC6C	99	93.125	Felis_catus
ENSCAFG00000005224	TNRC6C	96	79.063	ENSFALG00000000848	TNRC6C	100	85.868	Ficedula_albicollis
ENSCAFG00000005224	TNRC6C	92	88.282	ENSFDAG00000010368	TNRC6C	99	88.113	Fukomys_damarensis
ENSCAFG00000005224	TNRC6C	96	47.109	ENSFHEG00000002936	tnrc6c1	99	48.158	Fundulus_heteroclitus
ENSCAFG00000005224	TNRC6C	93	87.951	ENSGALG00000001725	TNRC6C	99	88.007	Gallus_gallus
ENSCAFG00000005224	TNRC6C	99	47.887	ENSGAFG00000019019	tnrc6c1	99	47.587	Gambusia_affinis
ENSCAFG00000005224	TNRC6C	78	50.000	ENSGACG00000012320	tnrc6c1	97	47.672	Gasterosteus_aculeatus
ENSCAFG00000005224	TNRC6C	99	80.543	ENSGAGG00000022043	TNRC6C	99	87.251	Gopherus_agassizii
ENSCAFG00000005224	TNRC6C	99	90.640	ENSGGOG00000011304	TNRC6C	100	90.856	Gorilla_gorilla
ENSCAFG00000005224	TNRC6C	97	46.112	ENSHBUG00000010846	tnrc6c1	98	53.347	Haplochromis_burtoni
ENSCAFG00000005224	TNRC6C	99	88.349	ENSHGLG00000004809	TNRC6C	99	88.245	Heterocephalus_glaber_female
ENSCAFG00000005224	TNRC6C	99	87.513	ENSHGLG00100012597	TNRC6C	99	87.669	Heterocephalus_glaber_male
ENSCAFG00000005224	TNRC6C	99	51.685	ENSIPUG00000000818	tnrc6c1	98	51.567	Ictalurus_punctatus
ENSCAFG00000005224	TNRC6C	99	86.947	ENSSTOG00000009101	TNRC6C	99	87.620	Ictidomys_tridecemlineatus
ENSCAFG00000005224	TNRC6C	99	85.707	ENSJJAG00000017055	Tnrc6c	99	85.759	Jaculus_jaculus
ENSCAFG00000005224	TNRC6C	99	47.539	ENSKMAG00000021023	tnrc6c1	97	49.709	Kryptolebias_marmoratus
ENSCAFG00000005224	TNRC6C	99	67.204	ENSLACG00000015283	TNRC6C	99	74.329	Latimeria_chalumnae
ENSCAFG00000005224	TNRC6C	99	71.630	ENSLOCG00000013377	tnrc6c1	88	67.647	Lepisosteus_oculatus
ENSCAFG00000005224	TNRC6C	99	89.126	ENSLAFG00000011122	TNRC6C	99	88.953	Loxodonta_africana
ENSCAFG00000005224	TNRC6C	99	90.980	ENSMFAG00000043943	TNRC6C	100	91.546	Macaca_fascicularis
ENSCAFG00000005224	TNRC6C	99	91.441	ENSMMUG00000011924	TNRC6C	100	89.422	Macaca_mulatta
ENSCAFG00000005224	TNRC6C	99	90.999	ENSMNEG00000030405	TNRC6C	99	90.999	Macaca_nemestrina
ENSCAFG00000005224	TNRC6C	99	90.999	ENSMLEG00000033436	TNRC6C	100	91.488	Mandrillus_leucophaeus
ENSCAFG00000005224	TNRC6C	95	53.433	ENSMAMG00000023613	tnrc6c1	97	51.294	Mastacembelus_armatus
ENSCAFG00000005224	TNRC6C	97	47.024	ENSMZEG00005010920	tnrc6c1	99	52.479	Maylandia_zebra
ENSCAFG00000005224	TNRC6C	99	79.969	ENSMGAG00000003906	TNRC6C	100	79.948	Meleagris_gallopavo
ENSCAFG00000005224	TNRC6C	96	79.679	ENSMAUG00000021618	Tnrc6c	100	86.455	Mesocricetus_auratus
ENSCAFG00000005224	TNRC6C	99	91.103	ENSMICG00000003952	TNRC6C	100	91.372	Microcebus_murinus
ENSCAFG00000005224	TNRC6C	99	87.929	ENSMOCG00000015879	Tnrc6c	99	88.345	Microtus_ochrogaster
ENSCAFG00000005224	TNRC6C	77	51.862	ENSMMOG00000005203	tnrc6c1	97	49.574	Mola_mola
ENSCAFG00000005224	TNRC6C	99	84.555	ENSMODG00000001785	TNRC6C	99	84.347	Monodelphis_domestica
ENSCAFG00000005224	TNRC6C	99	87.617	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	88.119	Mus_caroli
ENSCAFG00000005224	TNRC6C	99	87.149	ENSMUSG00000025571	Tnrc6c	99	87.669	Mus_musculus
ENSCAFG00000005224	TNRC6C	99	87.617	MGP_PahariEiJ_G0018593	Tnrc6c	99	88.119	Mus_pahari
ENSCAFG00000005224	TNRC6C	99	87.240	MGP_SPRETEiJ_G0018309	Tnrc6c	99	87.725	Mus_spretus
ENSCAFG00000005224	TNRC6C	99	94.299	ENSMPUG00000013348	TNRC6C	98	94.188	Mustela_putorius_furo
ENSCAFG00000005224	TNRC6C	99	83.144	ENSMLUG00000014431	TNRC6C	98	83.144	Myotis_lucifugus
ENSCAFG00000005224	TNRC6C	99	87.194	ENSNGAG00000012203	Tnrc6c	99	87.298	Nannospalax_galili
ENSCAFG00000005224	TNRC6C	93	49.336	ENSNBRG00000005344	tnrc6c1	98	54.221	Neolamprologus_brichardi
ENSCAFG00000005224	TNRC6C	98	89.086	ENSNLEG00000000047	TNRC6C	99	88.930	Nomascus_leucogenys
ENSCAFG00000005224	TNRC6C	96	72.276	ENSMEUG00000005104	TNRC6C	99	89.062	Notamacropus_eugenii
ENSCAFG00000005224	TNRC6C	89	88.760	ENSODEG00000012499	TNRC6C	100	88.876	Octodon_degus
ENSCAFG00000005224	TNRC6C	96	46.558	ENSONIG00000002210	tnrc6c1	96	53.851	Oreochromis_niloticus
ENSCAFG00000005224	TNRC6C	100	80.303	ENSOANG00000009758	-	85	80.303	Ornithorhynchus_anatinus
ENSCAFG00000005224	TNRC6C	84	79.939	ENSOCUG00000006122	TNRC6C	95	77.400	Oryctolagus_cuniculus
ENSCAFG00000005224	TNRC6C	92	47.596	ENSORLG00000009837	tnrc6c1	100	68.401	Oryzias_latipes
ENSCAFG00000005224	TNRC6C	92	48.522	ENSORLG00020016510	tnrc6c1	91	57.700	Oryzias_latipes_hni
ENSCAFG00000005224	TNRC6C	72	43.763	ENSORLG00015000171	tnrc6c1	89	51.979	Oryzias_latipes_hsok
ENSCAFG00000005224	TNRC6C	93	48.048	ENSOMEG00000000357	tnrc6c1	95	57.392	Oryzias_melastigma
ENSCAFG00000005224	TNRC6C	89	90.209	ENSOGAG00000007197	TNRC6C	100	90.209	Otolemur_garnettii
ENSCAFG00000005224	TNRC6C	95	86.445	ENSOARG00000006041	TNRC6C	98	86.500	Ovis_aries
ENSCAFG00000005224	TNRC6C	99	91.132	ENSPPAG00000027160	TNRC6C	100	91.546	Pan_paniscus
ENSCAFG00000005224	TNRC6C	99	92.917	ENSPPRG00000018881	TNRC6C	99	93.177	Panthera_pardus
ENSCAFG00000005224	TNRC6C	90	80.435	ENSPTIG00000008791	TNRC6C	91	86.757	Panthera_tigris_altaica
ENSCAFG00000005224	TNRC6C	99	91.207	ENSPTRG00000009699	TNRC6C	100	91.546	Pan_troglodytes
ENSCAFG00000005224	TNRC6C	99	91.051	ENSPANG00000019994	TNRC6C	99	91.051	Papio_anubis
ENSCAFG00000005224	TNRC6C	91	49.028	ENSPKIG00000005428	tnrc6c1	98	51.998	Paramormyrops_kingsleyae
ENSCAFG00000005224	TNRC6C	92	84.131	ENSPSIG00000018069	TNRC6C	99	84.018	Pelodiscus_sinensis
ENSCAFG00000005224	TNRC6C	64	57.692	ENSPMGG00000022911	tnrc6c1	97	63.158	Periophthalmus_magnuspinnatus
ENSCAFG00000005224	TNRC6C	99	87.617	ENSPEMG00000009785	Tnrc6c	99	87.617	Peromyscus_maniculatus_bairdii
ENSCAFG00000005224	TNRC6C	50	85.832	ENSPCIG00000017421	-	99	85.832	Phascolarctos_cinereus
ENSCAFG00000005224	TNRC6C	96	48.500	ENSPFOG00000012560	tnrc6c1	97	55.927	Poecilia_formosa
ENSCAFG00000005224	TNRC6C	89	49.782	ENSPLAG00000021055	tnrc6c1	97	50.493	Poecilia_latipinna
ENSCAFG00000005224	TNRC6C	99	91.962	ENSPPYG00000008679	TNRC6C	98	91.954	Pongo_abelii
ENSCAFG00000005224	TNRC6C	92	84.816	ENSPCAG00000012510	TNRC6C	94	85.683	Procavia_capensis
ENSCAFG00000005224	TNRC6C	89	92.415	ENSPCOG00000021451	TNRC6C	100	92.357	Propithecus_coquereli
ENSCAFG00000005224	TNRC6C	95	94.915	ENSPVAG00000002008	TNRC6C	95	94.915	Pteropus_vampyrus
ENSCAFG00000005224	TNRC6C	90	51.328	ENSPNYG00000014477	tnrc6c1	99	52.545	Pundamilia_nyererei
ENSCAFG00000005224	TNRC6C	89	87.739	ENSRNOG00000022395	Tnrc6c	100	87.623	Rattus_norvegicus
ENSCAFG00000005224	TNRC6C	99	90.923	ENSRBIG00000027777	TNRC6C	100	91.430	Rhinopithecus_bieti
ENSCAFG00000005224	TNRC6C	99	90.999	ENSRROG00000042912	TNRC6C	100	91.488	Rhinopithecus_roxellana
ENSCAFG00000005224	TNRC6C	99	90.323	ENSSBOG00000023981	TNRC6C	100	90.793	Saimiri_boliviensis_boliviensis
ENSCAFG00000005224	TNRC6C	54	85.075	ENSSHAG00000018330	-	100	89.274	Sarcophilus_harrisii
ENSCAFG00000005224	TNRC6C	91	57.552	ENSSFOG00015006475	tnrc6c1	98	51.211	Scleropages_formosus
ENSCAFG00000005224	TNRC6C	80	56.931	ENSSFOG00015004735	-	99	59.148	Scleropages_formosus
ENSCAFG00000005224	TNRC6C	92	47.379	ENSSMAG00000012761	tnrc6c1	99	49.773	Scophthalmus_maximus
ENSCAFG00000005224	TNRC6C	99	58.763	ENSSDUG00000002366	tnrc6c1	94	56.760	Seriola_dumerili
ENSCAFG00000005224	TNRC6C	89	58.454	ENSSLDG00000025613	tnrc6c1	93	56.553	Seriola_lalandi_dorsalis
ENSCAFG00000005224	TNRC6C	91	94.118	ENSSARG00000006816	TNRC6C	91	94.118	Sorex_araneus
ENSCAFG00000005224	TNRC6C	80	86.310	ENSSPUG00000007341	TNRC6C	98	86.310	Sphenodon_punctatus
ENSCAFG00000005224	TNRC6C	70	54.069	ENSSPAG00000014977	tnrc6c1	98	47.788	Stegastes_partitus
ENSCAFG00000005224	TNRC6C	86	93.264	ENSSSCG00000034373	TNRC6C	100	92.846	Sus_scrofa
ENSCAFG00000005224	TNRC6C	92	85.996	ENSTGUG00000007733	TNRC6C	99	85.939	Taeniopygia_guttata
ENSCAFG00000005224	TNRC6C	77	57.950	ENSTRUG00000011685	tnrc6c1	97	49.687	Takifugu_rubripes
ENSCAFG00000005224	TNRC6C	88	53.151	ENSTNIG00000005273	tnrc6c1	100	61.214	Tetraodon_nigroviridis
ENSCAFG00000005224	TNRC6C	58	84.000	ENSTBEG00000005046	TNRC6C	95	85.091	Tupaia_belangeri
ENSCAFG00000005224	TNRC6C	92	90.152	ENSTTRG00000010828	TNRC6C	99	90.152	Tursiops_truncatus
ENSCAFG00000005224	TNRC6C	99	95.013	ENSUMAG00000013614	TNRC6C	99	95.013	Ursus_maritimus
ENSCAFG00000005224	TNRC6C	51	72.678	ENSVPAG00000006765	-	99	80.088	Vicugna_pacos
ENSCAFG00000005224	TNRC6C	89	97.330	ENSVVUG00000015268	TNRC6C	100	97.330	Vulpes_vulpes
ENSCAFG00000005224	TNRC6C	96	66.800	ENSXETG00000019470	tnrc6c	100	73.406	Xenopus_tropicalis
ENSCAFG00000005224	TNRC6C	99	46.162	ENSXMAG00000025971	tnrc6c1	99	49.221	Xiphophorus_maculatus