EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000006031 (Gene tree)
Gene ID: 485544
Gene Symbol: LIG4
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 2736 bases
Position: chr22:56980622-56983357
Accession: 42675
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000009027	RNA_ligase	PF09414.10	4.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000009725	-	2736	XM_005634095	ENSCAFP00000009027	911 (aa)	XP_005634152	E2R0G7

Gene Model

Click here to download ENSCAFG00000006031's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000006031's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000006031	LIG4	100	90.999	ENSG00000174405	LIG4	100	90.999	Homo_sapiens
ENSCAFG00000006031	LIG4	99	65.165	ENSAPOG00000000866	lig4	99	65.385	Acanthochromis_polyacanthus
ENSCAFG00000006031	LIG4	100	93.524	ENSAMEG00000019685	LIG4	99	93.524	Ailuropoda_melanoleuca
ENSCAFG00000006031	LIG4	99	65.055	ENSACIG00000018309	lig4	99	65.275	Amphilophus_citrinellus
ENSCAFG00000006031	LIG4	99	65.088	ENSAOCG00000011768	lig4	99	65.308	Amphiprion_ocellaris
ENSCAFG00000006031	LIG4	99	65.198	ENSAPEG00000017815	lig4	99	65.419	Amphiprion_percula
ENSCAFG00000006031	LIG4	99	65.193	ENSATEG00000005583	lig4	99	65.414	Anabas_testudineus
ENSCAFG00000006031	LIG4	97	74.432	ENSAPLG00000001673	LIG4	99	74.432	Anas_platyrhynchos
ENSCAFG00000006031	LIG4	99	74.751	ENSACAG00000014566	LIG4	99	74.751	Anolis_carolinensis
ENSCAFG00000006031	LIG4	100	89.462	ENSANAG00000012446	LIG4	100	89.462	Aotus_nancymaae
ENSCAFG00000006031	LIG4	99	65.055	ENSACLG00000027051	lig4	99	65.055	Astatotilapia_calliptera
ENSCAFG00000006031	LIG4	99	64.088	ENSAMXG00000008192	lig4	93	64.088	Astyanax_mexicanus
ENSCAFG00000006031	LIG4	100	88.913	ENSBTAG00000015868	LIG4	100	88.913	Bos_taurus
ENSCAFG00000006031	LIG4	100	88.804	ENSCJAG00000014689	LIG4	100	88.804	Callithrix_jacchus
ENSCAFG00000006031	LIG4	100	100.000	ENSCAFG00020021230	LIG4	100	100.000	Canis_lupus_dingo
ENSCAFG00000006031	LIG4	100	88.255	ENSCHIG00000001019	LIG4	100	88.255	Capra_hircus
ENSCAFG00000006031	LIG4	99	87.818	ENSCAPG00000006284	LIG4	99	87.818	Cavia_aperea
ENSCAFG00000006031	LIG4	100	87.706	ENSCPOG00000014266	LIG4	100	87.706	Cavia_porcellus
ENSCAFG00000006031	LIG4	100	88.804	ENSCCAG00000019971	LIG4	100	88.804	Cebus_capucinus
ENSCAFG00000006031	LIG4	100	90.340	ENSCATG00000021075	LIG4	100	90.340	Cercocebus_atys
ENSCAFG00000006031	LIG4	100	88.694	ENSCLAG00000003376	LIG4	100	88.694	Chinchilla_lanigera
ENSCAFG00000006031	LIG4	100	90.450	ENSCSAG00000000211	LIG4	100	90.450	Chlorocebus_sabaeus
ENSCAFG00000006031	LIG4	99	77.594	ENSCPBG00000023291	LIG4	100	77.124	Chrysemys_picta_bellii
ENSCAFG00000006031	LIG4	68	45.469	ENSCING00000009536	-	95	45.469	Ciona_intestinalis
ENSCAFG00000006031	LIG4	83	45.801	ENSCSAVG00000010336	-	98	45.801	Ciona_savignyi
ENSCAFG00000006031	LIG4	100	90.231	ENSCANG00000005805	LIG4	100	90.231	Colobus_angolensis_palliatus
ENSCAFG00000006031	LIG4	100	85.636	ENSCGRG00001012072	Lig4	100	85.636	Cricetulus_griseus_chok1gshd
ENSCAFG00000006031	LIG4	100	85.636	ENSCGRG00000013417	Lig4	100	85.636	Cricetulus_griseus_crigri
ENSCAFG00000006031	LIG4	97	65.682	ENSCSEG00000013905	lig4	95	65.682	Cynoglossus_semilaevis
ENSCAFG00000006031	LIG4	99	65.116	ENSCVAG00000007896	lig4	99	65.116	Cyprinodon_variegatus
ENSCAFG00000006031	LIG4	99	63.898	ENSDARG00000060620	lig4	98	63.898	Danio_rerio
ENSCAFG00000006031	LIG4	100	88.377	ENSDNOG00000000513	LIG4	100	88.377	Dasypus_novemcinctus
ENSCAFG00000006031	LIG4	100	86.828	ENSDORG00000027303	Lig4	100	86.828	Dipodomys_ordii
ENSCAFG00000006031	LIG4	89	31.395	FBgn0030506	Lig4	91	31.395	Drosophila_melanogaster
ENSCAFG00000006031	LIG4	99	84.146	ENSETEG00000015563	LIG4	100	84.479	Echinops_telfairi
ENSCAFG00000006031	LIG4	99	43.592	ENSEBUG00000014243	lig4	99	43.592	Eptatretus_burgeri
ENSCAFG00000006031	LIG4	100	92.097	ENSEASG00005022073	LIG4	100	92.097	Equus_asinus_asinus
ENSCAFG00000006031	LIG4	100	91.658	ENSECAG00000003257	LIG4	100	91.658	Equus_caballus
ENSCAFG00000006031	LIG4	99	66.042	ENSELUG00000006787	lig4	99	66.152	Esox_lucius
ENSCAFG00000006031	LIG4	100	94.072	ENSFCAG00000031985	LIG4	100	94.072	Felis_catus
ENSCAFG00000006031	LIG4	89	75.031	ENSFALG00000004214	LIG4	98	75.031	Ficedula_albicollis
ENSCAFG00000006031	LIG4	100	88.364	ENSFDAG00000008973	LIG4	100	88.364	Fukomys_damarensis
ENSCAFG00000006031	LIG4	99	64.563	ENSFHEG00000007398	lig4	89	64.895	Fundulus_heteroclitus
ENSCAFG00000006031	LIG4	85	63.928	ENSGMOG00000012843	lig4	99	63.928	Gadus_morhua
ENSCAFG00000006031	LIG4	100	73.581	ENSGALG00000016854	LIG4	100	73.581	Gallus_gallus
ENSCAFG00000006031	LIG4	99	64.922	ENSGAFG00000019779	lig4	95	64.725	Gambusia_affinis
ENSCAFG00000006031	LIG4	99	63.012	ENSGACG00000014135	lig4	99	63.012	Gasterosteus_aculeatus
ENSCAFG00000006031	LIG4	100	90.889	ENSGGOG00000027771	LIG4	100	90.889	Gorilla_gorilla
ENSCAFG00000006031	LIG4	99	64.835	ENSHBUG00000006245	lig4	99	64.835	Haplochromis_burtoni
ENSCAFG00000006031	LIG4	100	88.694	ENSHGLG00000000718	LIG4	100	88.694	Heterocephalus_glaber_female
ENSCAFG00000006031	LIG4	100	88.694	ENSHGLG00100003265	LIG4	100	88.694	Heterocephalus_glaber_male
ENSCAFG00000006031	LIG4	100	64.013	ENSHCOG00000012010	lig4	100	63.795	Hippocampus_comes
ENSCAFG00000006031	LIG4	99	65.093	ENSIPUG00000013748	lig4	99	65.093	Ictalurus_punctatus
ENSCAFG00000006031	LIG4	100	87.706	ENSSTOG00000024303	LIG4	100	87.706	Ictidomys_tridecemlineatus
ENSCAFG00000006031	LIG4	100	86.279	ENSJJAG00000006750	Lig4	100	86.279	Jaculus_jaculus
ENSCAFG00000006031	LIG4	99	64.673	ENSKMAG00000001149	lig4	99	64.673	Kryptolebias_marmoratus
ENSCAFG00000006031	LIG4	91	65.745	ENSLBEG00000014578	lig4	100	65.986	Labrus_bergylta
ENSCAFG00000006031	LIG4	99	71.792	ENSLACG00000003282	LIG4	99	71.792	Latimeria_chalumnae
ENSCAFG00000006031	LIG4	99	70.088	ENSLOCG00000008901	lig4	97	70.088	Lepisosteus_oculatus
ENSCAFG00000006031	LIG4	100	86.747	ENSLAFG00000031152	LIG4	100	86.747	Loxodonta_africana
ENSCAFG00000006031	LIG4	100	90.450	ENSMFAG00000037235	LIG4	100	90.450	Macaca_fascicularis
ENSCAFG00000006031	LIG4	100	90.450	ENSMMUG00000008874	LIG4	100	90.450	Macaca_mulatta
ENSCAFG00000006031	LIG4	100	90.450	ENSMNEG00000023575	LIG4	100	90.450	Macaca_nemestrina
ENSCAFG00000006031	LIG4	100	90.231	ENSMLEG00000026720	LIG4	100	90.231	Mandrillus_leucophaeus
ENSCAFG00000006031	LIG4	99	65.275	ENSMAMG00000008472	lig4	99	65.495	Mastacembelus_armatus
ENSCAFG00000006031	LIG4	99	65.055	ENSMZEG00005001855	lig4	99	65.055	Maylandia_zebra
ENSCAFG00000006031	LIG4	100	74.017	ENSMGAG00000015532	LIG4	100	74.017	Meleagris_gallopavo
ENSCAFG00000006031	LIG4	100	82.766	ENSMOCG00000019000	Lig4	100	82.766	Microtus_ochrogaster
ENSCAFG00000006031	LIG4	99	64.452	ENSMMOG00000004390	lig4	99	64.230	Mola_mola
ENSCAFG00000006031	LIG4	100	83.864	ENSMODG00000025064	LIG4	100	84.320	Monodelphis_domestica
ENSCAFG00000006031	LIG4	99	64.895	ENSMALG00000008555	lig4	99	64.895	Monopterus_albus
ENSCAFG00000006031	LIG4	100	85.401	MGP_CAROLIEiJ_G0030809	Lig4	100	85.401	Mus_caroli
ENSCAFG00000006031	LIG4	100	85.291	ENSMUSG00000049717	Lig4	100	85.291	Mus_musculus
ENSCAFG00000006031	LIG4	100	85.071	MGP_PahariEiJ_G0021270	Lig4	100	85.071	Mus_pahari
ENSCAFG00000006031	LIG4	100	85.401	MGP_SPRETEiJ_G0031917	Lig4	100	85.401	Mus_spretus
ENSCAFG00000006031	LIG4	100	92.426	ENSMPUG00000018675	LIG4	100	92.426	Mustela_putorius_furo
ENSCAFG00000006031	LIG4	100	90.779	ENSMLUG00000001267	LIG4	100	90.779	Myotis_lucifugus
ENSCAFG00000006031	LIG4	100	85.730	ENSNGAG00000013258	Lig4	100	85.730	Nannospalax_galili
ENSCAFG00000006031	LIG4	99	64.835	ENSNBRG00000021252	lig4	99	64.835	Neolamprologus_brichardi
ENSCAFG00000006031	LIG4	100	90.231	ENSNLEG00000007888	LIG4	100	90.231	Nomascus_leucogenys
ENSCAFG00000006031	LIG4	100	86.718	ENSOPRG00000005765	LIG4	100	86.718	Ochotona_princeps
ENSCAFG00000006031	LIG4	100	87.157	ENSODEG00000019683	LIG4	100	87.157	Octodon_degus
ENSCAFG00000006031	LIG4	99	64.835	ENSONIG00000011969	lig4	98	65.055	Oreochromis_niloticus
ENSCAFG00000006031	LIG4	100	89.791	ENSOCUG00000015734	LIG4	100	89.791	Oryctolagus_cuniculus
ENSCAFG00000006031	LIG4	99	64.097	ENSORLG00000004041	lig4	99	63.767	Oryzias_latipes
ENSCAFG00000006031	LIG4	99	64.427	ENSORLG00020019607	lig4	99	64.097	Oryzias_latipes_hni
ENSCAFG00000006031	LIG4	99	64.207	ENSORLG00015017754	lig4	99	63.877	Oryzias_latipes_hsok
ENSCAFG00000006031	LIG4	74	69.527	ENSOMEG00000003459	lig4	98	69.527	Oryzias_melastigma
ENSCAFG00000006031	LIG4	100	89.693	ENSOGAG00000032120	LIG4	99	89.693	Otolemur_garnettii
ENSCAFG00000006031	LIG4	82	90.470	ENSOARG00000005590	LIG4	98	90.470	Ovis_aries
ENSCAFG00000006031	LIG4	100	90.560	ENSPPAG00000032998	LIG4	100	90.560	Pan_paniscus
ENSCAFG00000006031	LIG4	100	94.072	ENSPPRG00000017804	LIG4	100	94.072	Panthera_pardus
ENSCAFG00000006031	LIG4	100	93.743	ENSPTIG00000010051	LIG4	100	93.743	Panthera_tigris_altaica
ENSCAFG00000006031	LIG4	100	90.670	ENSPTRG00000006025	LIG4	100	90.670	Pan_troglodytes
ENSCAFG00000006031	LIG4	100	90.450	ENSPANG00000007562	LIG4	100	90.450	Papio_anubis
ENSCAFG00000006031	LIG4	99	66.044	ENSPKIG00000011645	lig4	98	66.044	Paramormyrops_kingsleyae
ENSCAFG00000006031	LIG4	100	76.638	ENSPSIG00000001504	LIG4	100	76.638	Pelodiscus_sinensis
ENSCAFG00000006031	LIG4	99	63.000	ENSPMGG00000013486	lig4	99	62.459	Periophthalmus_magnuspinnatus
ENSCAFG00000006031	LIG4	100	85.197	ENSPEMG00000000076	Lig4	100	85.197	Peromyscus_maniculatus_bairdii
ENSCAFG00000006031	LIG4	100	83.553	ENSPCIG00000021882	LIG4	100	83.553	Phascolarctos_cinereus
ENSCAFG00000006031	LIG4	99	65.184	ENSPFOG00000000797	lig4	99	64.725	Poecilia_formosa
ENSCAFG00000006031	LIG4	99	65.072	ENSPLAG00000001196	lig4	99	64.615	Poecilia_latipinna
ENSCAFG00000006031	LIG4	99	65.184	ENSPMEG00000021353	lig4	99	64.835	Poecilia_mexicana
ENSCAFG00000006031	LIG4	99	64.961	ENSPREG00000007323	lig4	99	64.615	Poecilia_reticulata
ENSCAFG00000006031	LIG4	100	90.560	ENSPPYG00000005540	LIG4	100	90.560	Pongo_abelii
ENSCAFG00000006031	LIG4	100	90.121	ENSPVAG00000016403	LIG4	100	90.121	Pteropus_vampyrus
ENSCAFG00000006031	LIG4	99	64.945	ENSPNYG00000009660	lig4	99	64.945	Pundamilia_nyererei
ENSCAFG00000006031	LIG4	100	63.706	ENSPNAG00000028069	LIG4	100	63.706	Pygocentrus_nattereri
ENSCAFG00000006031	LIG4	100	63.706	ENSPNAG00000028056	lig4	100	63.706	Pygocentrus_nattereri
ENSCAFG00000006031	LIG4	100	84.632	ENSRNOG00000014605	Lig4	100	84.632	Rattus_norvegicus
ENSCAFG00000006031	LIG4	100	88.804	ENSRBIG00000039962	LIG4	100	88.804	Rhinopithecus_bieti
ENSCAFG00000006031	LIG4	100	89.901	ENSRROG00000006040	LIG4	100	89.901	Rhinopithecus_roxellana
ENSCAFG00000006031	LIG4	100	88.913	ENSSBOG00000019029	LIG4	100	88.913	Saimiri_boliviensis_boliviensis
ENSCAFG00000006031	LIG4	100	79.693	ENSSHAG00000009525	LIG4	100	80.263	Sarcophilus_harrisii
ENSCAFG00000006031	LIG4	100	64.738	ENSSFOG00015012835	lig4	100	64.738	Scleropages_formosus
ENSCAFG00000006031	LIG4	99	62.791	ENSSMAG00000011267	lig4	99	62.791	Scophthalmus_maximus
ENSCAFG00000006031	LIG4	99	65.521	ENSSDUG00000010343	lig4	98	65.521	Seriola_dumerili
ENSCAFG00000006031	LIG4	99	63.846	ENSSLDG00000003239	lig4	99	63.846	Seriola_lalandi_dorsalis
ENSCAFG00000006031	LIG4	100	83.370	ENSSARG00000006573	LIG4	100	83.370	Sorex_araneus
ENSCAFG00000006031	LIG4	93	76.540	ENSSPUG00000002444	LIG4	100	76.540	Sphenodon_punctatus
ENSCAFG00000006031	LIG4	99	65.495	ENSSPAG00000001609	lig4	99	65.495	Stegastes_partitus
ENSCAFG00000006031	LIG4	100	89.023	ENSSSCG00000009540	LIG4	100	89.023	Sus_scrofa
ENSCAFG00000006031	LIG4	99	73.783	ENSTGUG00000010795	LIG4	99	73.783	Taeniopygia_guttata
ENSCAFG00000006031	LIG4	99	64.895	ENSTRUG00000009984	lig4	99	64.895	Takifugu_rubripes
ENSCAFG00000006031	LIG4	99	65.495	ENSTNIG00000010348	lig4	99	65.714	Tetraodon_nigroviridis
ENSCAFG00000006031	LIG4	100	89.243	ENSTBEG00000017741	LIG4	100	89.243	Tupaia_belangeri
ENSCAFG00000006031	LIG4	100	89.682	ENSTTRG00000012660	LIG4	100	89.682	Tursiops_truncatus
ENSCAFG00000006031	LIG4	100	93.194	ENSUAMG00000003773	LIG4	100	93.194	Ursus_americanus
ENSCAFG00000006031	LIG4	100	71.070	ENSXETG00000002654	lig4	100	71.070	Xenopus_tropicalis
ENSCAFG00000006031	LIG4	99	64.961	ENSXCOG00000017401	lig4	99	64.505	Xiphophorus_couchianus
ENSCAFG00000006031	LIG4	99	65.111	ENSXMAG00000015142	lig4	99	64.654	Xiphophorus_maculatus