EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCAFG00000006504 (Gene tree)
Gene ID
607836
Gene Symbol
UPF3A
Alias
-
Full Name
UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Canis_familiaris
Status
putative
Strand
Plus strand
Length
24890 bases
Position
chr22:61320622-61345511
Accession
48152
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCAFP00000009736Smg4_UPF3PF03467.151.5e-5211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCAFT00000010502-1389XM_005634140ENSCAFP00000009736463 (aa)XP_005634198E2R5F4
Gene Model
Click here to download ENSCAFG00000006504's gene model file
Pathways
Pathway IDPathway NameSource
cfa03013RNA transportKEGG
cfa03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000006504's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCAFG00000006504UPF3A8645.122ENSCAFG00000018426UPF3B8846.845
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCAFG00000006504UPF3A5952.857ENSG00000125351UPF3B8863.684Homo_sapiens
ENSCAFG00000006504UPF3A10073.605ENSG00000169062UPF3A9975.962Homo_sapiens
ENSCAFG00000006504UPF3A8944.470ENSAPOG00000012775upf3b9349.195Acanthochromis_polyacanthus
ENSCAFG00000006504UPF3A9485.550ENSAMEG00000004259UPF3A9685.550Ailuropoda_melanoleuca
ENSCAFG00000006504UPF3A8644.068ENSAMEG00000000163UPF3B8645.388Ailuropoda_melanoleuca
ENSCAFG00000006504UPF3A5455.894ENSAOCG00000000706upf3b9148.364Amphiprion_ocellaris
ENSCAFG00000006504UPF3A9854.957ENSATEG00000005843upf3a9155.022Anabas_testudineus
ENSCAFG00000006504UPF3A8546.135ENSACAG00000003625UPF3B9149.770Anolis_carolinensis
ENSCAFG00000006504UPF3A8270.341ENSACAG00000001540UPF3A9270.341Anolis_carolinensis
ENSCAFG00000006504UPF3A8445.522ENSANAG00000021894-8763.830Aotus_nancymaae
ENSCAFG00000006504UPF3A9872.807ENSANAG00000021713UPF3A9672.807Aotus_nancymaae
ENSCAFG00000006504UPF3A8445.161ENSANAG00000025598-8845.667Aotus_nancymaae
ENSCAFG00000006504UPF3A9955.098ENSAMXG00000002608upf3a9455.315Astyanax_mexicanus
ENSCAFG00000006504UPF3A8445.274ENSCJAG00000004975UPF3B8266.102Callithrix_jacchus
ENSCAFG00000006504UPF3A9873.246ENSCJAG00000019102UPF3A9673.246Callithrix_jacchus
ENSCAFG00000006504UPF3A10099.352ENSCAFG00020014268UPF3A9799.352Canis_lupus_dingo
ENSCAFG00000006504UPF3A8645.320ENSCAFG00020004074UPF3B8645.610Canis_lupus_dingo
ENSCAFG00000006504UPF3A5049.784ENSCHIG00000011454-8936.429Capra_hircus
ENSCAFG00000006504UPF3A9473.455ENSCHIG00000008682UPF3A9073.348Capra_hircus
ENSCAFG00000006504UPF3A8445.000ENSTSYG00000014690UPF3B8760.104Carlito_syrichta
ENSCAFG00000006504UPF3A7666.851ENSTSYG00000001918UPF3A9667.033Carlito_syrichta
ENSCAFG00000006504UPF3A9265.501ENSCPOG00000006824UPF3A9865.501Cavia_porcellus
ENSCAFG00000006504UPF3A8339.426ENSCCAG00000029813-8938.060Cebus_capucinus
ENSCAFG00000006504UPF3A9875.877ENSCCAG00000018406UPF3A9675.877Cebus_capucinus
ENSCAFG00000006504UPF3A10072.747ENSCATG00000029733UPF3A9872.747Cercocebus_atys
ENSCAFG00000006504UPF3A5355.823ENSCATG00000017506UPF3B8963.351Cercocebus_atys
ENSCAFG00000006504UPF3A5652.747ENSCLAG00000003260UPF3B9245.125Chinchilla_lanigera
ENSCAFG00000006504UPF3A10072.068ENSCSAG00000017388UPF3A9872.068Chlorocebus_sabaeus
ENSCAFG00000006504UPF3A5060.086ENSCPBG00000020685UPF3B8646.420Chrysemys_picta_bellii
ENSCAFG00000006504UPF3A5355.385ENSCGRG00001013643-9052.679Cricetulus_griseus_chok1gshd
ENSCAFG00000006504UPF3A5354.789ENSCGRG00001006858-9048.284Cricetulus_griseus_chok1gshd
ENSCAFG00000006504UPF3A9469.725ENSCGRG00001017387Upf3a10069.725Cricetulus_griseus_chok1gshd
ENSCAFG00000006504UPF3A9369.606ENSCGRG00000001468Upf3a9969.606Cricetulus_griseus_crigri
ENSCAFG00000006504UPF3A8348.395ENSCSEG00000002046upf3b8549.644Cynoglossus_semilaevis
ENSCAFG00000006504UPF3A9357.143ENSCSEG00000005106upf3a9057.143Cynoglossus_semilaevis
ENSCAFG00000006504UPF3A8558.065ENSCVAG00000022333upf3a8358.313Cyprinodon_variegatus
ENSCAFG00000006504UPF3A9074.186ENSDNOG00000034391UPF3A9875.406Dasypus_novemcinctus
ENSCAFG00000006504UPF3A5951.786ENSDORG00000006077Upf3b8948.736Dipodomys_ordii
ENSCAFG00000006504UPF3A9964.086ENSETEG00000010110UPF3A9764.516Echinops_telfairi
ENSCAFG00000006504UPF3A9976.989ENSEASG00005021884UPF3A9676.989Equus_asinus_asinus
ENSCAFG00000006504UPF3A8446.867ENSEASG00005012919UPF3B8646.210Equus_asinus_asinus
ENSCAFG00000006504UPF3A8446.867ENSECAG00000016947UPF3B8646.210Equus_caballus
ENSCAFG00000006504UPF3A9976.559ENSECAG00000017141UPF3A9676.559Equus_caballus
ENSCAFG00000006504UPF3A9755.165ENSELUG00000011050upf3a9155.165Esox_lucius
ENSCAFG00000006504UPF3A9881.182ENSFCAG00000014602UPF3A9681.182Felis_catus
ENSCAFG00000006504UPF3A5355.823ENSFCAG00000004388UPF3B8845.626Felis_catus
ENSCAFG00000006504UPF3A9541.090ENSFALG00000001569UPF3B9041.875Ficedula_albicollis
ENSCAFG00000006504UPF3A8644.552ENSFDAG00000018869UPF3B8646.731Fukomys_damarensis
ENSCAFG00000006504UPF3A7160.465ENSGMOG00000019615upf3a10060.465Gadus_morhua
ENSCAFG00000006504UPF3A5354.086ENSGMOG00000001621upf3b8946.479Gadus_morhua
ENSCAFG00000006504UPF3A7162.426ENSGACG00000001972upf3a10063.063Gasterosteus_aculeatus
ENSCAFG00000006504UPF3A5454.440ENSGACG00000017435upf3b9146.868Gasterosteus_aculeatus
ENSCAFG00000006504UPF3A8444.903ENSGAGG00000001219UPF3B8947.017Gopherus_agassizii
ENSCAFG00000006504UPF3A9160.900ENSGGOG00000041219-8963.568Gorilla_gorilla
ENSCAFG00000006504UPF3A5952.857ENSGGOG00000023995UPF3B7164.748Gorilla_gorilla
ENSCAFG00000006504UPF3A10073.605ENSGGOG00000015428UPF3A9873.605Gorilla_gorilla
ENSCAFG00000006504UPF3A9956.710ENSGGOG00000043074-9756.710Gorilla_gorilla
ENSCAFG00000006504UPF3A8569.620ENSHGLG00000001544UPF3A9169.620Heterocephalus_glaber_female
ENSCAFG00000006504UPF3A9042.523ENSHGLG00000019582-8645.894Heterocephalus_glaber_female
ENSCAFG00000006504UPF3A5552.308ENSHGLG00000011189-8743.784Heterocephalus_glaber_female
ENSCAFG00000006504UPF3A5552.308ENSHGLG00100001889-8744.262Heterocephalus_glaber_male
ENSCAFG00000006504UPF3A8569.620ENSHGLG00100013244UPF3A9169.620Heterocephalus_glaber_male
ENSCAFG00000006504UPF3A9041.568ENSHGLG00100002042-8645.192Heterocephalus_glaber_male
ENSCAFG00000006504UPF3A8548.039ENSHCOG00000017004upf3b8948.434Hippocampus_comes
ENSCAFG00000006504UPF3A9854.923ENSIPUG00000023450upf3a9354.923Ictalurus_punctatus
ENSCAFG00000006504UPF3A5163.968ENSIPUG00000019249upf3b9048.592Ictalurus_punctatus
ENSCAFG00000006504UPF3A8644.524ENSSTOG00000001101UPF3B8846.262Ictidomys_tridecemlineatus
ENSCAFG00000006504UPF3A6350.820ENSJJAG00000000053Upf3b8846.136Jaculus_jaculus
ENSCAFG00000006504UPF3A9852.298ENSKMAG00000004381upf3a9154.267Kryptolebias_marmoratus
ENSCAFG00000006504UPF3A5259.449ENSLBEG00000028689upf3b5555.200Labrus_bergylta
ENSCAFG00000006504UPF3A6146.667ENSLACG00000006645UPF3A9041.791Latimeria_chalumnae
ENSCAFG00000006504UPF3A5065.702ENSLOCG00000015238upf3b9047.188Lepisosteus_oculatus
ENSCAFG00000006504UPF3A9859.300ENSLOCG00000002665upf3a9359.300Lepisosteus_oculatus
ENSCAFG00000006504UPF3A8744.076ENSLAFG00000001267UPF3B9245.495Loxodonta_africana
ENSCAFG00000006504UPF3A8560.476ENSLAFG00000023358UPF3A9860.095Loxodonta_africana
ENSCAFG00000006504UPF3A10068.936ENSMFAG00000045016UPF3A9868.936Macaca_fascicularis
ENSCAFG00000006504UPF3A5356.627ENSMFAG00000045414UPF3B8963.351Macaca_fascicularis
ENSCAFG00000006504UPF3A5356.627ENSMMUG00000020222UPF3B8963.351Macaca_mulatta
ENSCAFG00000006504UPF3A9671.525ENSMMUG00000007449UPF3A9870.323Macaca_mulatta
ENSCAFG00000006504UPF3A9966.247ENSMNEG00000036402UPF3A9866.247Macaca_nemestrina
ENSCAFG00000006504UPF3A5356.627ENSMNEG00000039794UPF3B8963.351Macaca_nemestrina
ENSCAFG00000006504UPF3A8673.367ENSMLEG00000014726UPF3A9273.367Mandrillus_leucophaeus
ENSCAFG00000006504UPF3A5355.823ENSMLEG00000010999UPF3B8963.351Mandrillus_leucophaeus
ENSCAFG00000006504UPF3A9354.120ENSMAMG00000018364upf3a8955.457Mastacembelus_armatus
ENSCAFG00000006504UPF3A7772.269ENSMGAG00000014837UPF3A8972.269Meleagris_gallopavo
ENSCAFG00000006504UPF3A8744.496ENSMAUG00000008705Upf3b8949.885Mesocricetus_auratus
ENSCAFG00000006504UPF3A6779.553ENSMOCG00000000550Upf3a8779.553Microtus_ochrogaster
ENSCAFG00000006504UPF3A8642.857ENSMOCG00000017893Upf3b8844.521Microtus_ochrogaster
ENSCAFG00000006504UPF3A8375.065ENSMODG00000003159UPF3A9074.870Monodelphis_domestica
ENSCAFG00000006504UPF3A8347.395ENSMODG00000010232UPF3B9251.861Monodelphis_domestica
ENSCAFG00000006504UPF3A8943.021MGP_CAROLIEiJ_G0032999Upf3b9147.865Mus_caroli
ENSCAFG00000006504UPF3A8968.750MGP_CAROLIEiJ_G0030848Upf3a9968.736Mus_caroli
ENSCAFG00000006504UPF3A8970.192ENSMUSG00000038398Upf3a9970.252Mus_musculus
ENSCAFG00000006504UPF3A6249.508ENSMUSG00000036572Upf3b9147.758Mus_musculus
ENSCAFG00000006504UPF3A8969.712MGP_PahariEiJ_G0021311Upf3a9969.794Mus_pahari
ENSCAFG00000006504UPF3A8743.692MGP_PahariEiJ_G0031543Upf3b8948.630Mus_pahari
ENSCAFG00000006504UPF3A8970.192MGP_SPRETEiJ_G0031958Upf3a9970.252Mus_spretus
ENSCAFG00000006504UPF3A6249.508MGP_SPRETEiJ_G0034152Upf3b9147.758Mus_spretus
ENSCAFG00000006504UPF3A5554.615ENSMPUG00000001531UPF3B9045.843Mustela_putorius_furo
ENSCAFG00000006504UPF3A10083.656ENSMPUG00000009139UPF3A9683.656Mustela_putorius_furo
ENSCAFG00000006504UPF3A8577.307ENSMLUG00000015905UPF3A9577.307Myotis_lucifugus
ENSCAFG00000006504UPF3A8445.387ENSMLUG00000010821UPF3B8649.645Myotis_lucifugus
ENSCAFG00000006504UPF3A9470.252ENSNGAG00000019314Upf3a10070.252Nannospalax_galili
ENSCAFG00000006504UPF3A5355.823ENSNLEG00000014897UPF3B7464.748Nomascus_leucogenys
ENSCAFG00000006504UPF3A10072.805ENSNLEG00000007563UPF3A9872.805Nomascus_leucogenys
ENSCAFG00000006504UPF3A9042.155ENSODEG00000002186-8943.925Octodon_degus
ENSCAFG00000006504UPF3A8244.472ENSOANG00000002594-9344.169Ornithorhynchus_anatinus
ENSCAFG00000006504UPF3A7964.754ENSOANG00000006985-9564.754Ornithorhynchus_anatinus
ENSCAFG00000006504UPF3A9758.298ENSOCUG00000008450UPF3A9458.105Oryctolagus_cuniculus
ENSCAFG00000006504UPF3A8441.707ENSORLG00000001026upf3b9043.160Oryzias_latipes
ENSCAFG00000006504UPF3A8755.422ENSORLG00000010911upf3a8556.585Oryzias_latipes
ENSCAFG00000006504UPF3A9252.834ENSORLG00020014317upf3a8953.580Oryzias_latipes_hni
ENSCAFG00000006504UPF3A8441.707ENSORLG00020003758upf3b9047.619Oryzias_latipes_hni
ENSCAFG00000006504UPF3A8441.707ENSORLG00015012954upf3b9043.160Oryzias_latipes_hsok
ENSCAFG00000006504UPF3A9254.128ENSORLG00015017339upf3a5352.052Oryzias_latipes_hsok
ENSCAFG00000006504UPF3A9355.102ENSOMEG00000014425upf3a8955.963Oryzias_melastigma
ENSCAFG00000006504UPF3A7048.024ENSOGAG00000004643-8944.690Otolemur_garnettii
ENSCAFG00000006504UPF3A8575.940ENSOGAG00000004788UPF3A9675.940Otolemur_garnettii
ENSCAFG00000006504UPF3A5850.883ENSOGAG00000033003-9147.404Otolemur_garnettii
ENSCAFG00000006504UPF3A9771.366ENSOARG00000009004UPF3A9471.366Ovis_aries
ENSCAFG00000006504UPF3A8343.990ENSOARG00000007869-9141.985Ovis_aries
ENSCAFG00000006504UPF3A10072.103ENSPPAG00000042267UPF3A9872.103Pan_paniscus
ENSCAFG00000006504UPF3A5952.857ENSPPAG00000040390UPF3B7164.748Pan_paniscus
ENSCAFG00000006504UPF3A9881.838ENSPPRG00000025062UPF3A9681.838Panthera_pardus
ENSCAFG00000006504UPF3A5356.627ENSPPRG00000023536UPF3B8845.238Panthera_pardus
ENSCAFG00000006504UPF3A5355.823ENSPTIG00000015264UPF3B8844.828Panthera_tigris_altaica
ENSCAFG00000006504UPF3A10072.961ENSPTRG00000006073UPF3A9872.961Pan_troglodytes
ENSCAFG00000006504UPF3A8662.060ENSPTRG00000041187-9656.808Pan_troglodytes
ENSCAFG00000006504UPF3A8660.553ENSPTRG00000041835-9656.808Pan_troglodytes
ENSCAFG00000006504UPF3A5952.857ENSPTRG00000022228UPF3B7164.748Pan_troglodytes
ENSCAFG00000006504UPF3A9159.005ENSPTRG00000051640-9559.005Pan_troglodytes
ENSCAFG00000006504UPF3A5355.823ENSPANG00000000900UPF3B8963.351Papio_anubis
ENSCAFG00000006504UPF3A9873.626ENSPANG00000004346UPF3A9573.626Papio_anubis
ENSCAFG00000006504UPF3A8645.921ENSPKIG00000019226upf3b7570.085Paramormyrops_kingsleyae
ENSCAFG00000006504UPF3A9553.950ENSPKIG00000004422upf3a9254.699Paramormyrops_kingsleyae
ENSCAFG00000006504UPF3A8372.396ENSPSIG00000007468UPF3A9472.396Pelodiscus_sinensis
ENSCAFG00000006504UPF3A9469.565ENSPEMG00000019968-10069.565Peromyscus_maniculatus_bairdii
ENSCAFG00000006504UPF3A5554.104ENSPEMG00000012352Upf3b8649.176Peromyscus_maniculatus_bairdii
ENSCAFG00000006504UPF3A8745.755ENSPCIG00000028914UPF3B8945.390Phascolarctos_cinereus
ENSCAFG00000006504UPF3A7676.371ENSPCIG00000019590-9078.673Phascolarctos_cinereus
ENSCAFG00000006504UPF3A8646.697ENSPFOG00000013222upf3a8458.780Poecilia_formosa
ENSCAFG00000006504UPF3A8658.049ENSPLAG00000011960upf3a8658.519Poecilia_latipinna
ENSCAFG00000006504UPF3A8647.188ENSPMEG00000000836upf3a8555.972Poecilia_mexicana
ENSCAFG00000006504UPF3A10073.176ENSPPYG00000005536UPF3A9873.176Pongo_abelii
ENSCAFG00000006504UPF3A7168.263ENSPCAG00000013124UPF3A6969.162Procavia_capensis
ENSCAFG00000006504UPF3A8445.658ENSPCOG00000021960UPF3B8849.312Propithecus_coquereli
ENSCAFG00000006504UPF3A9873.742ENSPVAG00000005656UPF3A9872.805Pteropus_vampyrus
ENSCAFG00000006504UPF3A8641.505ENSPNYG00000009846upf3b9545.000Pundamilia_nyererei
ENSCAFG00000006504UPF3A9954.176ENSPNAG00000019532upf3a9454.664Pygocentrus_nattereri
ENSCAFG00000006504UPF3A5158.025ENSPNAG00000021528upf3b9047.887Pygocentrus_nattereri
ENSCAFG00000006504UPF3A8870.146ENSRNOG00000017397Upf3a9770.316Rattus_norvegicus
ENSCAFG00000006504UPF3A5354.789ENSRNOG00000039994Upf3b9147.534Rattus_norvegicus
ENSCAFG00000006504UPF3A8872.549ENSRBIG00000034007UPF3A9272.422Rhinopithecus_bieti
ENSCAFG00000006504UPF3A8573.552ENSRROG00000012212UPF3A8373.552Rhinopithecus_roxellana
ENSCAFG00000006504UPF3A5952.857ENSRROG00000041031UPF3B8963.351Rhinopithecus_roxellana
ENSCAFG00000006504UPF3A9866.886ENSSBOG00000029989UPF3A9566.886Saimiri_boliviensis_boliviensis
ENSCAFG00000006504UPF3A8446.135ENSSBOG00000019740UPF3B8966.129Saimiri_boliviensis_boliviensis
ENSCAFG00000006504UPF3A8474.555ENSSHAG00000009895UPF3A9474.365Sarcophilus_harrisii
ENSCAFG00000006504UPF3A8447.087ENSSHAG00000008634UPF3B8746.336Sarcophilus_harrisii
ENSCAFG00000006504UPF3A8645.991ENSSFOG00015005614upf3b9145.814Scleropages_formosus
ENSCAFG00000006504UPF3A9848.822ENSSFOG00015021851upf3a9352.298Scleropages_formosus
ENSCAFG00000006504UPF3A5561.742ENSSMAG00000012913upf3b9147.796Scophthalmus_maximus
ENSCAFG00000006504UPF3A8365.285ENSSARG00000007262UPF3A9462.435Sorex_araneus
ENSCAFG00000006504UPF3A8744.366ENSSPUG00000013082UPF3B8745.735Sphenodon_punctatus
ENSCAFG00000006504UPF3A5362.598ENSSPAG00000009989upf3b9349.539Stegastes_partitus
ENSCAFG00000006504UPF3A8445.025ENSSSCG00000012617UPF3B8845.581Sus_scrofa
ENSCAFG00000006504UPF3A9973.118ENSSSCG00000024679UPF3A9373.118Sus_scrofa
ENSCAFG00000006504UPF3A8473.350ENSTGUG00000009493UPF3A10073.350Taeniopygia_guttata
ENSCAFG00000006504UPF3A8345.636ENSTGUG00000003413UPF3B9346.617Taeniopygia_guttata
ENSCAFG00000006504UPF3A9852.484ENSTRUG00000012730upf3a9252.735Takifugu_rubripes
ENSCAFG00000006504UPF3A8550.000ENSTNIG00000014973upf3a9950.246Tetraodon_nigroviridis
ENSCAFG00000006504UPF3A6763.259ENSTBEG00000017186-9863.259Tupaia_belangeri
ENSCAFG00000006504UPF3A9866.228ENSTTRG00000015414UPF3A9566.228Tursiops_truncatus
ENSCAFG00000006504UPF3A8445.185ENSUAMG00000024565UPF3B8844.893Ursus_americanus
ENSCAFG00000006504UPF3A8343.490ENSUMAG00000002150UPF3B8344.140Ursus_maritimus
ENSCAFG00000006504UPF3A8376.031ENSVPAG00000003525UPF3A9576.031Vicugna_pacos
ENSCAFG00000006504UPF3A10093.737ENSVVUG00000013538UPF3A9493.737Vulpes_vulpes
ENSCAFG00000006504UPF3A8445.823ENSVVUG00000011594UPF3B8366.102Vulpes_vulpes
ENSCAFG00000006504UPF3A8458.205ENSXETG00000002572upf3a9058.205Xenopus_tropicalis
ENSCAFG00000006504UPF3A8344.975ENSXETG00000007440upf3b7468.023Xenopus_tropicalis
ENSCAFG00000006504UPF3A8644.878ENSXMAG00000013452upf3a8458.272Xiphophorus_maculatus

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