EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000007613 (Gene tree)
Gene ID: 475766
Gene Symbol: POLR1A
Alias: -
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 70417 bases
Position: chr17:39000667-39071083
Accession: 44788
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000040891	RNA_pol_Rpb1_5	PF04998.17	7e-104	1	1
ENSCAFP00000011333	RNA_pol_Rpb1_5	PF04998.17	7.7e-104	1	1
ENSCAFP00000011333	RNA_pol_Rpb1_4	PF05000.17	1.8e-25	1	1
ENSCAFP00000040891	RNA_pol_Rpb1_4	PF05000.17	1.9e-25	1	1
ENSCAFP00000011333	RNA_pol_Rpb1_2	PF00623.20	4.3e-70	1	1
ENSCAFP00000040891	RNA_pol_Rpb1_2	PF00623.20	4.5e-70	1	1
ENSCAFP00000040891	RNA_pol_Rpb1_3	PF04983.18	9.2e-37	1	1
ENSCAFP00000011333	RNA_pol_Rpb1_3	PF04983.18	9.6e-37	1	1
ENSCAFP00000040891	RNA_pol_Rpb1_1	PF04997.12	8e-22	1	1
ENSCAFP00000011333	RNA_pol_Rpb1_1	PF04997.12	9.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000047500	-	6271	XM_005630474	ENSCAFP00000040891	1717 (aa)	XP_005630531	J9P5G4
ENSCAFT00000012228	-	5241	-	ENSCAFP00000011333	1746 (aa)	-	E2R0G4

Gene Model

Click here to download ENSCAFG00000007613's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000007613's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000007613	POLR1A	64	37.143	ENSCAFG00000016532	POLR2A	60	37.143
ENSCAFG00000007613	POLR1A	62	32.796	ENSCAFG00000015546	POLR3A	70	32.581

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000007613	POLR1A	100	90.587	ENSG00000068654	POLR1A	100	90.656	Homo_sapiens
ENSCAFG00000007613	POLR1A	69	68.044	ENSAPOG00000017945	polr1a	99	68.044	Acanthochromis_polyacanthus
ENSCAFG00000007613	POLR1A	100	95.867	ENSAMEG00000005807	POLR1A	100	96.107	Ailuropoda_melanoleuca
ENSCAFG00000007613	POLR1A	100	63.103	ENSACIG00000022147	polr1a	100	66.327	Amphilophus_citrinellus
ENSCAFG00000007613	POLR1A	100	66.454	ENSAOCG00000017336	polr1a	100	68.596	Amphiprion_ocellaris
ENSCAFG00000007613	POLR1A	95	73.611	ENSAPEG00000016105	polr1a	98	73.611	Amphiprion_percula
ENSCAFG00000007613	POLR1A	100	67.014	ENSATEG00000016773	polr1a	100	66.532	Anabas_testudineus
ENSCAFG00000007613	POLR1A	86	73.090	ENSAPLG00000013871	POLR1A	99	73.048	Anas_platyrhynchos
ENSCAFG00000007613	POLR1A	99	69.769	ENSACAG00000012141	POLR1A	99	69.422	Anolis_carolinensis
ENSCAFG00000007613	POLR1A	100	89.709	ENSANAG00000033927	POLR1A	100	90.116	Aotus_nancymaae
ENSCAFG00000007613	POLR1A	100	62.935	ENSACLG00000020541	polr1a	100	62.703	Astatotilapia_calliptera
ENSCAFG00000007613	POLR1A	100	91.094	ENSBTAG00000006481	POLR1A	100	91.094	Bos_taurus
ENSCAFG00000007613	POLR1A	99	37.944	WBGene00012999	rpoa-1	98	37.931	Caenorhabditis_elegans
ENSCAFG00000007613	POLR1A	100	89.425	ENSCJAG00000019547	POLR1A	100	89.599	Callithrix_jacchus
ENSCAFG00000007613	POLR1A	100	99.652	ENSCAFG00020014752	POLR1A	100	99.652	Canis_lupus_dingo
ENSCAFG00000007613	POLR1A	100	89.559	ENSCHIG00000018204	POLR1A	99	90.415	Capra_hircus
ENSCAFG00000007613	POLR1A	100	88.947	ENSTSYG00000002761	POLR1A	100	88.947	Carlito_syrichta
ENSCAFG00000007613	POLR1A	97	85.125	ENSCAPG00000010132	POLR1A	100	84.979	Cavia_aperea
ENSCAFG00000007613	POLR1A	100	89.645	ENSCPOG00000012350	POLR1A	100	89.645	Cavia_porcellus
ENSCAFG00000007613	POLR1A	100	89.831	ENSCCAG00000019839	POLR1A	100	89.727	Cebus_capucinus
ENSCAFG00000007613	POLR1A	100	90.994	ENSCATG00000029786	POLR1A	100	91.062	Cercocebus_atys
ENSCAFG00000007613	POLR1A	100	89.495	ENSCLAG00000005187	POLR1A	100	89.321	Chinchilla_lanigera
ENSCAFG00000007613	POLR1A	100	90.872	ENSCSAG00000016251	POLR1A	100	90.883	Chlorocebus_sabaeus
ENSCAFG00000007613	POLR1A	99	75.611	ENSCPBG00000001115	POLR1A	99	75.146	Chrysemys_picta_bellii
ENSCAFG00000007613	POLR1A	93	55.087	ENSCSAVG00000007184	-	97	50.000	Ciona_savignyi
ENSCAFG00000007613	POLR1A	100	88.037	ENSCANG00000031785	POLR1A	100	87.587	Colobus_angolensis_palliatus
ENSCAFG00000007613	POLR1A	100	83.295	ENSCGRG00001006651	Polr1a	100	83.295	Cricetulus_griseus_chok1gshd
ENSCAFG00000007613	POLR1A	60	86.906	ENSCGRG00000010834	Polr1a	100	86.906	Cricetulus_griseus_crigri
ENSCAFG00000007613	POLR1A	100	62.173	ENSCSEG00000020190	polr1a	100	62.231	Cynoglossus_semilaevis
ENSCAFG00000007613	POLR1A	100	64.021	ENSCVAG00000020941	polr1a	100	64.055	Cyprinodon_variegatus
ENSCAFG00000007613	POLR1A	100	67.441	ENSDARG00000098375	polr1a	100	66.493	Danio_rerio
ENSCAFG00000007613	POLR1A	100	82.995	ENSDNOG00000010829	POLR1A	100	82.995	Dasypus_novemcinctus
ENSCAFG00000007613	POLR1A	100	88.464	ENSDORG00000008298	Polr1a	100	88.464	Dipodomys_ordii
ENSCAFG00000007613	POLR1A	73	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSCAFG00000007613	POLR1A	88	67.442	ENSEBUG00000005667	-	93	67.442	Eptatretus_burgeri
ENSCAFG00000007613	POLR1A	100	93.256	ENSEASG00005001625	POLR1A	100	93.430	Equus_asinus_asinus
ENSCAFG00000007613	POLR1A	100	93.256	ENSECAG00000030510	-	100	95.322	Equus_caballus
ENSCAFG00000007613	POLR1A	100	93.256	ENSECAG00000010092	POLR1A	100	95.322	Equus_caballus
ENSCAFG00000007613	POLR1A	100	93.256	ENSECAG00000036306	-	100	95.322	Equus_caballus
ENSCAFG00000007613	POLR1A	85	95.745	ENSEEUG00000000676	POLR1A	85	95.556	Erinaceus_europaeus
ENSCAFG00000007613	POLR1A	100	67.266	ENSELUG00000012769	polr1a	99	66.207	Esox_lucius
ENSCAFG00000007613	POLR1A	100	95.111	ENSFCAG00000008966	POLR1A	100	95.111	Felis_catus
ENSCAFG00000007613	POLR1A	99	71.680	ENSFALG00000010082	POLR1A	99	71.680	Ficedula_albicollis
ENSCAFG00000007613	POLR1A	100	89.419	ENSFDAG00000013726	POLR1A	100	89.360	Fukomys_damarensis
ENSCAFG00000007613	POLR1A	100	61.855	ENSFHEG00000005996	polr1a	100	61.930	Fundulus_heteroclitus
ENSCAFG00000007613	POLR1A	100	60.163	ENSGMOG00000002230	polr1a	100	59.251	Gadus_morhua
ENSCAFG00000007613	POLR1A	90	70.233	ENSGALG00000038160	-	99	69.844	Gallus_gallus
ENSCAFG00000007613	POLR1A	100	64.713	ENSGAFG00000015266	polr1a	100	64.097	Gambusia_affinis
ENSCAFG00000007613	POLR1A	100	64.960	ENSGACG00000018791	polr1a	100	64.716	Gasterosteus_aculeatus
ENSCAFG00000007613	POLR1A	89	76.558	ENSGAGG00000004984	-	95	82.188	Gopherus_agassizii
ENSCAFG00000007613	POLR1A	100	90.529	ENSGGOG00000001788	POLR1A	100	90.598	Gorilla_gorilla
ENSCAFG00000007613	POLR1A	90	64.865	ENSHBUG00000020021	polr1a	98	65.769	Haplochromis_burtoni
ENSCAFG00000007613	POLR1A	100	89.936	ENSHGLG00000006334	POLR1A	100	89.936	Heterocephalus_glaber_female
ENSCAFG00000007613	POLR1A	100	89.675	ENSHGLG00100006614	POLR1A	100	89.675	Heterocephalus_glaber_male
ENSCAFG00000007613	POLR1A	100	62.190	ENSHCOG00000003345	polr1a	100	62.254	Hippocampus_comes
ENSCAFG00000007613	POLR1A	100	65.991	ENSIPUG00000013174	polr1a	100	65.373	Ictalurus_punctatus
ENSCAFG00000007613	POLR1A	100	87.027	ENSSTOG00000012580	POLR1A	100	87.384	Ictidomys_tridecemlineatus
ENSCAFG00000007613	POLR1A	100	88.095	ENSJJAG00000013113	Polr1a	100	88.095	Jaculus_jaculus
ENSCAFG00000007613	POLR1A	100	65.794	ENSKMAG00000007399	polr1a	100	65.794	Kryptolebias_marmoratus
ENSCAFG00000007613	POLR1A	95	68.912	ENSLBEG00000015401	polr1a	99	67.992	Labrus_bergylta
ENSCAFG00000007613	POLR1A	53	76.605	ENSLACG00000003218	polr1a	100	76.605	Latimeria_chalumnae
ENSCAFG00000007613	POLR1A	100	71.114	ENSLOCG00000010881	polr1a	100	70.857	Lepisosteus_oculatus
ENSCAFG00000007613	POLR1A	100	89.675	ENSLAFG00000014948	POLR1A	100	89.739	Loxodonta_africana
ENSCAFG00000007613	POLR1A	100	90.877	ENSMFAG00000046097	POLR1A	100	91.004	Macaca_fascicularis
ENSCAFG00000007613	POLR1A	100	90.761	ENSMMUG00000015815	POLR1A	100	90.888	Macaca_mulatta
ENSCAFG00000007613	POLR1A	100	90.877	ENSMNEG00000043313	POLR1A	100	91.004	Macaca_nemestrina
ENSCAFG00000007613	POLR1A	100	90.296	ENSMLEG00000042428	POLR1A	100	90.424	Mandrillus_leucophaeus
ENSCAFG00000007613	POLR1A	100	66.395	ENSMAMG00000016565	polr1a	100	65.699	Mastacembelus_armatus
ENSCAFG00000007613	POLR1A	100	66.183	ENSMZEG00005004915	polr1a	100	66.067	Maylandia_zebra
ENSCAFG00000007613	POLR1A	99	69.262	ENSMGAG00000013111	POLR1A	99	69.378	Meleagris_gallopavo
ENSCAFG00000007613	POLR1A	92	87.532	ENSMAUG00000008497	Polr1a	100	87.342	Mesocricetus_auratus
ENSCAFG00000007613	POLR1A	100	91.575	ENSMICG00000000757	POLR1A	100	91.517	Microcebus_murinus
ENSCAFG00000007613	POLR1A	100	87.819	ENSMOCG00000000122	Polr1a	100	87.645	Microtus_ochrogaster
ENSCAFG00000007613	POLR1A	100	65.058	ENSMMOG00000010216	polr1a	100	65.291	Mola_mola
ENSCAFG00000007613	POLR1A	100	74.856	ENSMODG00000009335	POLR1A	100	74.684	Monodelphis_domestica
ENSCAFG00000007613	POLR1A	100	66.164	ENSMALG00000013363	polr1a	100	65.878	Monopterus_albus
ENSCAFG00000007613	POLR1A	100	85.963	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.731	Mus_caroli
ENSCAFG00000007613	POLR1A	100	85.963	ENSMUSG00000049553	Polr1a	100	85.789	Mus_musculus
ENSCAFG00000007613	POLR1A	100	86.841	MGP_PahariEiJ_G0022230	Polr1a	100	86.667	Mus_pahari
ENSCAFG00000007613	POLR1A	100	84.786	MGP_SPRETEiJ_G0029499	Polr1a	100	84.971	Mus_spretus
ENSCAFG00000007613	POLR1A	100	95.518	ENSMPUG00000009135	POLR1A	100	95.518	Mustela_putorius_furo
ENSCAFG00000007613	POLR1A	100	90.562	ENSMLUG00000015723	POLR1A	100	90.562	Myotis_lucifugus
ENSCAFG00000007613	POLR1A	100	88.058	ENSNGAG00000017907	Polr1a	100	87.884	Nannospalax_galili
ENSCAFG00000007613	POLR1A	100	66.357	ENSNBRG00000000519	polr1a	100	66.088	Neolamprologus_brichardi
ENSCAFG00000007613	POLR1A	100	88.722	ENSNLEG00000002264	POLR1A	100	88.619	Nomascus_leucogenys
ENSCAFG00000007613	POLR1A	75	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSCAFG00000007613	POLR1A	99	83.392	ENSOPRG00000008269	POLR1A	100	82.803	Ochotona_princeps
ENSCAFG00000007613	POLR1A	100	89.070	ENSODEG00000003542	POLR1A	100	89.360	Octodon_degus
ENSCAFG00000007613	POLR1A	100	66.763	ENSONIG00000015895	polr1a	100	66.763	Oreochromis_niloticus
ENSCAFG00000007613	POLR1A	100	90.407	ENSOCUG00000010138	POLR1A	100	90.349	Oryctolagus_cuniculus
ENSCAFG00000007613	POLR1A	100	64.655	ENSORLG00000008753	polr1a	99	64.597	Oryzias_latipes
ENSCAFG00000007613	POLR1A	100	63.399	ENSORLG00020020726	polr1a	99	63.457	Oryzias_latipes_hni
ENSCAFG00000007613	POLR1A	95	75.532	ENSORLG00015016071	polr1a	98	75.556	Oryzias_latipes_hsok
ENSCAFG00000007613	POLR1A	100	90.116	ENSOGAG00000004031	POLR1A	100	90.116	Otolemur_garnettii
ENSCAFG00000007613	POLR1A	100	90.825	ENSOARG00000020601	POLR1A	100	90.825	Ovis_aries
ENSCAFG00000007613	POLR1A	100	90.529	ENSPPAG00000042450	POLR1A	100	90.598	Pan_paniscus
ENSCAFG00000007613	POLR1A	100	95.285	ENSPPRG00000006702	POLR1A	100	95.285	Panthera_pardus
ENSCAFG00000007613	POLR1A	100	94.722	ENSPTIG00000018783	POLR1A	100	94.722	Panthera_tigris_altaica
ENSCAFG00000007613	POLR1A	100	90.075	ENSPTRG00000012147	POLR1A	100	90.656	Pan_troglodytes
ENSCAFG00000007613	POLR1A	100	90.877	ENSPANG00000025908	POLR1A	100	90.946	Papio_anubis
ENSCAFG00000007613	POLR1A	94	76.389	ENSPKIG00000005468	polr1a	99	76.389	Paramormyrops_kingsleyae
ENSCAFG00000007613	POLR1A	63	72.627	ENSPSIG00000009321	-	99	71.703	Pelodiscus_sinensis
ENSCAFG00000007613	POLR1A	54	68.235	ENSPMGG00000009718	polr1a	95	68.235	Periophthalmus_magnuspinnatus
ENSCAFG00000007613	POLR1A	100	88.051	ENSPEMG00000022224	Polr1a	100	88.051	Peromyscus_maniculatus_bairdii
ENSCAFG00000007613	POLR1A	95	79.197	ENSPCIG00000004222	POLR1A	99	79.245	Phascolarctos_cinereus
ENSCAFG00000007613	POLR1A	100	64.658	ENSPFOG00000005025	polr1a	100	64.481	Poecilia_formosa
ENSCAFG00000007613	POLR1A	100	64.904	ENSPLAG00000021389	polr1a	100	64.662	Poecilia_latipinna
ENSCAFG00000007613	POLR1A	100	63.204	ENSPMEG00000006463	polr1a	100	63.012	Poecilia_mexicana
ENSCAFG00000007613	POLR1A	100	65.139	ENSPREG00000002389	polr1a	100	64.965	Poecilia_reticulata
ENSCAFG00000007613	POLR1A	100	89.948	ENSPPYG00000012217	POLR1A	100	90.006	Pongo_abelii
ENSCAFG00000007613	POLR1A	92	100.000	ENSPCAG00000011582	POLR1A	92	100.000	Procavia_capensis
ENSCAFG00000007613	POLR1A	100	90.994	ENSPCOG00000026987	POLR1A	100	90.994	Propithecus_coquereli
ENSCAFG00000007613	POLR1A	95	92.279	ENSPVAG00000012674	POLR1A	95	91.873	Pteropus_vampyrus
ENSCAFG00000007613	POLR1A	100	66.241	ENSPNYG00000000026	polr1a	100	66.067	Pundamilia_nyererei
ENSCAFG00000007613	POLR1A	100	66.860	ENSPNAG00000019223	polr1a	99	69.046	Pygocentrus_nattereri
ENSCAFG00000007613	POLR1A	100	87.703	ENSRNOG00000009545	Polr1a	100	87.529	Rattus_norvegicus
ENSCAFG00000007613	POLR1A	100	90.233	ENSRBIG00000028335	POLR1A	100	90.418	Rhinopithecus_bieti
ENSCAFG00000007613	POLR1A	100	90.174	ENSRROG00000031473	POLR1A	100	90.360	Rhinopithecus_roxellana
ENSCAFG00000007613	POLR1A	99	36.753	YOR341W	RPA190	99	36.486	Saccharomyces_cerevisiae
ENSCAFG00000007613	POLR1A	100	89.134	ENSSBOG00000030262	POLR1A	100	89.309	Saimiri_boliviensis_boliviensis
ENSCAFG00000007613	POLR1A	100	73.426	ENSSHAG00000014739	POLR1A	100	73.599	Sarcophilus_harrisii
ENSCAFG00000007613	POLR1A	100	67.886	ENSSFOG00015019716	polr1a	100	67.886	Scleropages_formosus
ENSCAFG00000007613	POLR1A	100	66.241	ENSSMAG00000014342	polr1a	100	66.241	Scophthalmus_maximus
ENSCAFG00000007613	POLR1A	100	67.265	ENSSDUG00000014631	polr1a	100	67.034	Seriola_dumerili
ENSCAFG00000007613	POLR1A	100	65.603	ENSSLDG00000024095	polr1a	100	64.994	Seriola_lalandi_dorsalis
ENSCAFG00000007613	POLR1A	75	97.872	ENSSARG00000003136	-	76	97.872	Sorex_araneus
ENSCAFG00000007613	POLR1A	94	78.974	ENSSPUG00000004215	POLR1A	98	78.974	Sphenodon_punctatus
ENSCAFG00000007613	POLR1A	64	73.029	ENSSPAG00000016341	polr1a	95	73.029	Stegastes_partitus
ENSCAFG00000007613	POLR1A	83	92.572	ENSSSCG00000008226	POLR1A	99	92.551	Sus_scrofa
ENSCAFG00000007613	POLR1A	99	70.377	ENSTGUG00000010704	POLR1A	100	70.377	Taeniopygia_guttata
ENSCAFG00000007613	POLR1A	100	64.733	ENSTRUG00000002210	polr1a	99	64.576	Takifugu_rubripes
ENSCAFG00000007613	POLR1A	100	59.873	ENSTNIG00000010116	polr1a	100	59.873	Tetraodon_nigroviridis
ENSCAFG00000007613	POLR1A	74	96.460	ENSTBEG00000008646	POLR1A	74	96.460	Tupaia_belangeri
ENSCAFG00000007613	POLR1A	100	87.602	ENSTTRG00000008597	POLR1A	100	88.009	Tursiops_truncatus
ENSCAFG00000007613	POLR1A	69	96.867	ENSUAMG00000012158	-	94	96.867	Ursus_americanus
ENSCAFG00000007613	POLR1A	100	95.693	ENSUMAG00000006700	POLR1A	100	95.693	Ursus_maritimus
ENSCAFG00000007613	POLR1A	100	99.418	ENSVVUG00000001245	POLR1A	100	99.418	Vulpes_vulpes
ENSCAFG00000007613	POLR1A	100	68.454	ENSXETG00000001952	polr1a	100	69.811	Xenopus_tropicalis
ENSCAFG00000007613	POLR1A	100	65.139	ENSXMAG00000004032	polr1a	100	64.760	Xiphophorus_maculatus