EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000007783 (Gene tree)
Gene ID: 477100
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 103559 bases
Position: chr23:38028100-38131658
Accession: 48471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000042722	XRN_N	PF03159.18	2.9e-96	1	1
ENSCAFP00000011586	XRN_N	PF03159.18	5.1e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000047807	-	10299	XM_005634537	ENSCAFP00000042722	1730 (aa)	XP_005634594	J9PAD8
ENSCAFT00000012512	-	5106	XM_005634539	ENSCAFP00000011586	1702 (aa)	-	F6XNM6

Gene Model

Click here to download ENSCAFG00000007783's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03008	Ribosome biogenesis in eukaryotes	KEGG
cfa03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000007783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000007783	XRN1	100	92.966	ENSG00000114127	XRN1	100	98.182	Homo_sapiens
ENSCAFG00000007783	XRN1	93	73.431	ENSAPOG00000000622	xrn1	93	76.972	Acanthochromis_polyacanthus
ENSCAFG00000007783	XRN1	100	97.233	ENSAMEG00000012538	XRN1	100	97.233	Ailuropoda_melanoleuca
ENSCAFG00000007783	XRN1	95	72.883	ENSACIG00000001057	xrn1	93	73.089	Amphilophus_citrinellus
ENSCAFG00000007783	XRN1	95	70.625	ENSAOCG00000014097	xrn1	96	70.625	Amphiprion_ocellaris
ENSCAFG00000007783	XRN1	100	61.127	ENSAPEG00000006620	xrn1	91	73.034	Amphiprion_percula
ENSCAFG00000007783	XRN1	94	71.292	ENSATEG00000009752	xrn1	96	71.667	Anabas_testudineus
ENSCAFG00000007783	XRN1	99	77.088	ENSAPLG00000004905	XRN1	100	76.682	Anas_platyrhynchos
ENSCAFG00000007783	XRN1	100	73.607	ENSACAG00000004985	XRN1	100	73.382	Anolis_carolinensis
ENSCAFG00000007783	XRN1	100	92.970	ENSANAG00000029013	XRN1	99	96.470	Aotus_nancymaae
ENSCAFG00000007783	XRN1	100	60.596	ENSACLG00000004806	xrn1	95	62.208	Astatotilapia_calliptera
ENSCAFG00000007783	XRN1	99	60.445	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSCAFG00000007783	XRN1	100	93.146	ENSBTAG00000011524	XRN1	100	93.087	Bos_taurus
ENSCAFG00000007783	XRN1	70	38.737	WBGene00012730	xrn-1	83	38.905	Caenorhabditis_elegans
ENSCAFG00000007783	XRN1	100	92.732	ENSCJAG00000001872	XRN1	100	92.732	Callithrix_jacchus
ENSCAFG00000007783	XRN1	100	99.884	ENSCAFG00020009120	XRN1	100	99.884	Canis_lupus_dingo
ENSCAFG00000007783	XRN1	99	93.927	ENSCHIG00000019192	XRN1	99	93.754	Capra_hircus
ENSCAFG00000007783	XRN1	100	92.096	ENSTSYG00000002705	XRN1	100	92.213	Carlito_syrichta
ENSCAFG00000007783	XRN1	54	77.280	ENSCAPG00000004604	-	99	77.280	Cavia_aperea
ENSCAFG00000007783	XRN1	100	93.497	ENSCCAG00000034800	XRN1	99	97.464	Cebus_capucinus
ENSCAFG00000007783	XRN1	100	93.322	ENSCATG00000041794	XRN1	100	93.322	Cercocebus_atys
ENSCAFG00000007783	XRN1	100	89.325	ENSCLAG00000001451	XRN1	99	95.721	Chinchilla_lanigera
ENSCAFG00000007783	XRN1	100	93.380	ENSCSAG00000011265	XRN1	100	93.380	Chlorocebus_sabaeus
ENSCAFG00000007783	XRN1	60	100.000	ENSCHOG00000013961	-	61	100.000	Choloepus_hoffmanni
ENSCAFG00000007783	XRN1	71	45.039	ENSCSAVG00000008584	-	98	44.884	Ciona_savignyi
ENSCAFG00000007783	XRN1	100	93.494	ENSCANG00000037495	XRN1	99	98.204	Colobus_angolensis_palliatus
ENSCAFG00000007783	XRN1	100	89.948	ENSCGRG00001019411	Xrn1	99	95.721	Cricetulus_griseus_chok1gshd
ENSCAFG00000007783	XRN1	100	89.948	ENSCGRG00000012464	Xrn1	99	95.721	Cricetulus_griseus_crigri
ENSCAFG00000007783	XRN1	92	67.799	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCAFG00000007783	XRN1	66	73.121	ENSCVAG00000013089	xrn1	99	73.121	Cyprinodon_variegatus
ENSCAFG00000007783	XRN1	99	63.077	ENSDARG00000091652	xrn1	98	80.761	Danio_rerio
ENSCAFG00000007783	XRN1	100	87.694	ENSDORG00000013833	Xrn1	100	87.637	Dipodomys_ordii
ENSCAFG00000007783	XRN1	74	40.109	FBgn0020261	pcm	76	39.938	Drosophila_melanogaster
ENSCAFG00000007783	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCAFG00000007783	XRN1	100	94.570	ENSEASG00005002687	XRN1	99	98.204	Equus_asinus_asinus
ENSCAFG00000007783	XRN1	100	93.732	ENSECAG00000008301	XRN1	100	93.732	Equus_caballus
ENSCAFG00000007783	XRN1	92	83.187	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSCAFG00000007783	XRN1	100	61.712	ENSELUG00000000169	xrn1	100	60.734	Esox_lucius
ENSCAFG00000007783	XRN1	100	90.984	ENSFCAG00000027589	XRN1	99	97.143	Felis_catus
ENSCAFG00000007783	XRN1	100	75.576	ENSFALG00000007021	XRN1	100	74.902	Ficedula_albicollis
ENSCAFG00000007783	XRN1	100	90.190	ENSFDAG00000020494	XRN1	99	95.087	Fukomys_damarensis
ENSCAFG00000007783	XRN1	84	68.399	ENSGMOG00000006396	xrn1	80	68.876	Gadus_morhua
ENSCAFG00000007783	XRN1	100	75.998	ENSGALG00000002706	XRN1	100	75.604	Gallus_gallus
ENSCAFG00000007783	XRN1	100	60.532	ENSGACG00000014328	xrn1	95	62.217	Gasterosteus_aculeatus
ENSCAFG00000007783	XRN1	95	79.325	ENSGAGG00000017535	XRN1	99	78.963	Gopherus_agassizii
ENSCAFG00000007783	XRN1	100	93.029	ENSGGOG00000008047	XRN1	100	93.029	Gorilla_gorilla
ENSCAFG00000007783	XRN1	94	71.044	ENSHBUG00000005908	xrn1	98	73.566	Haplochromis_burtoni
ENSCAFG00000007783	XRN1	100	91.349	ENSHGLG00000014476	XRN1	99	96.407	Heterocephalus_glaber_female
ENSCAFG00000007783	XRN1	100	91.407	ENSHGLG00100015130	XRN1	99	96.407	Heterocephalus_glaber_male
ENSCAFG00000007783	XRN1	96	71.566	ENSHCOG00000014062	xrn1	97	70.391	Hippocampus_comes
ENSCAFG00000007783	XRN1	99	62.164	ENSIPUG00000015229	xrn1	96	63.914	Ictalurus_punctatus
ENSCAFG00000007783	XRN1	100	93.707	ENSSTOG00000013552	XRN1	99	98.204	Ictidomys_tridecemlineatus
ENSCAFG00000007783	XRN1	98	87.998	ENSJJAG00000010863	Xrn1	99	94.611	Jaculus_jaculus
ENSCAFG00000007783	XRN1	94	61.636	ENSKMAG00000021356	xrn1	94	77.495	Kryptolebias_marmoratus
ENSCAFG00000007783	XRN1	94	70.408	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCAFG00000007783	XRN1	100	70.394	ENSLACG00000009020	XRN1	96	71.700	Latimeria_chalumnae
ENSCAFG00000007783	XRN1	100	65.349	ENSLOCG00000007944	xrn1	98	65.182	Lepisosteus_oculatus
ENSCAFG00000007783	XRN1	62	96.445	ENSLAFG00000015426	XRN1	100	96.445	Loxodonta_africana
ENSCAFG00000007783	XRN1	100	93.380	ENSMFAG00000032599	XRN1	100	93.380	Macaca_fascicularis
ENSCAFG00000007783	XRN1	100	93.380	ENSMMUG00000014038	XRN1	100	93.380	Macaca_mulatta
ENSCAFG00000007783	XRN1	100	93.322	ENSMNEG00000034217	XRN1	100	93.322	Macaca_nemestrina
ENSCAFG00000007783	XRN1	94	71.090	ENSMAMG00000013219	xrn1	94	77.664	Mastacembelus_armatus
ENSCAFG00000007783	XRN1	100	60.562	ENSMZEG00005015099	xrn1	95	62.091	Maylandia_zebra
ENSCAFG00000007783	XRN1	99	76.016	ENSMGAG00000006333	XRN1	100	75.610	Meleagris_gallopavo
ENSCAFG00000007783	XRN1	100	92.982	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCAFG00000007783	XRN1	56	94.770	ENSMOCG00000008665	Xrn1	99	94.770	Microtus_ochrogaster
ENSCAFG00000007783	XRN1	100	81.776	ENSMODG00000021236	XRN1	100	81.484	Monodelphis_domestica
ENSCAFG00000007783	XRN1	94	67.267	ENSMALG00000004098	xrn1	98	67.189	Monopterus_albus
ENSCAFG00000007783	XRN1	96	94.629	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSCAFG00000007783	XRN1	100	88.388	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSCAFG00000007783	XRN1	100	88.215	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSCAFG00000007783	XRN1	100	88.330	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSCAFG00000007783	XRN1	100	96.016	ENSMPUG00000012040	XRN1	100	96.016	Mustela_putorius_furo
ENSCAFG00000007783	XRN1	100	92.379	ENSMLUG00000016885	XRN1	100	92.263	Myotis_lucifugus
ENSCAFG00000007783	XRN1	56	95.210	ENSNGAG00000023964	Xrn1	99	91.429	Nannospalax_galili
ENSCAFG00000007783	XRN1	100	93.142	ENSNLEG00000004726	XRN1	100	93.142	Nomascus_leucogenys
ENSCAFG00000007783	XRN1	79	98.969	ENSMEUG00000014473	-	79	99.029	Notamacropus_eugenii
ENSCAFG00000007783	XRN1	79	84.800	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSCAFG00000007783	XRN1	100	62.164	ENSONIG00000016673	xrn1	99	65.187	Oreochromis_niloticus
ENSCAFG00000007783	XRN1	92	77.118	ENSOANG00000006735	XRN1	100	76.991	Ornithorhynchus_anatinus
ENSCAFG00000007783	XRN1	100	91.519	ENSOCUG00000001861	XRN1	100	91.347	Oryctolagus_cuniculus
ENSCAFG00000007783	XRN1	94	72.378	ENSORLG00000013005	xrn1	92	72.378	Oryzias_latipes
ENSCAFG00000007783	XRN1	94	72.793	ENSORLG00020005559	xrn1	98	72.632	Oryzias_latipes_hni
ENSCAFG00000007783	XRN1	100	60.654	ENSORLG00015022523	xrn1	89	72.472	Oryzias_latipes_hsok
ENSCAFG00000007783	XRN1	95	72.794	ENSOMEG00000015397	xrn1	100	73.366	Oryzias_melastigma
ENSCAFG00000007783	XRN1	100	90.158	ENSOGAG00000000170	XRN1	100	90.217	Otolemur_garnettii
ENSCAFG00000007783	XRN1	99	93.915	ENSOARG00000006343	XRN1	99	93.743	Ovis_aries
ENSCAFG00000007783	XRN1	100	93.029	ENSPPAG00000010180	XRN1	100	93.029	Pan_paniscus
ENSCAFG00000007783	XRN1	100	94.672	ENSPPRG00000007125	XRN1	100	94.672	Panthera_pardus
ENSCAFG00000007783	XRN1	100	94.672	ENSPTIG00000021081	XRN1	100	94.672	Panthera_tigris_altaica
ENSCAFG00000007783	XRN1	100	93.029	ENSPTRG00000015482	XRN1	100	93.029	Pan_troglodytes
ENSCAFG00000007783	XRN1	100	93.263	ENSPANG00000010638	XRN1	100	93.263	Papio_anubis
ENSCAFG00000007783	XRN1	100	78.013	ENSPSIG00000018050	XRN1	100	77.898	Pelodiscus_sinensis
ENSCAFG00000007783	XRN1	57	79.491	ENSPMGG00000002648	xrn1	98	79.491	Periophthalmus_magnuspinnatus
ENSCAFG00000007783	XRN1	56	95.404	ENSPEMG00000020610	Xrn1	99	95.404	Peromyscus_maniculatus_bairdii
ENSCAFG00000007783	XRN1	65	52.313	ENSPMAG00000002975	xrn1	91	78.736	Petromyzon_marinus
ENSCAFG00000007783	XRN1	95	88.003	ENSPCIG00000028735	XRN1	99	90.194	Phascolarctos_cinereus
ENSCAFG00000007783	XRN1	90	65.237	ENSPFOG00000013932	xrn1	99	65.555	Poecilia_formosa
ENSCAFG00000007783	XRN1	90	64.277	ENSPLAG00000021653	xrn1	99	64.654	Poecilia_latipinna
ENSCAFG00000007783	XRN1	88	64.466	ENSPMEG00000003076	xrn1	95	64.786	Poecilia_mexicana
ENSCAFG00000007783	XRN1	96	70.055	ENSPREG00000021147	xrn1	96	69.819	Poecilia_reticulata
ENSCAFG00000007783	XRN1	100	92.966	ENSPPYG00000014172	XRN1	100	92.966	Pongo_abelii
ENSCAFG00000007783	XRN1	90	81.582	ENSPCAG00000005638	XRN1	99	81.611	Procavia_capensis
ENSCAFG00000007783	XRN1	100	92.970	ENSPCOG00000013089	XRN1	99	98.503	Propithecus_coquereli
ENSCAFG00000007783	XRN1	96	91.854	ENSPVAG00000016265	XRN1	96	91.854	Pteropus_vampyrus
ENSCAFG00000007783	XRN1	94	72.152	ENSPNYG00000010570	xrn1	94	72.231	Pundamilia_nyererei
ENSCAFG00000007783	XRN1	99	60.472	ENSPNAG00000023531	xrn1	97	61.356	Pygocentrus_nattereri
ENSCAFG00000007783	XRN1	100	89.081	ENSRNOG00000042951	Xrn1	100	88.966	Rattus_norvegicus
ENSCAFG00000007783	XRN1	100	92.794	ENSRBIG00000041227	XRN1	100	92.794	Rhinopithecus_bieti
ENSCAFG00000007783	XRN1	66	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSCAFG00000007783	XRN1	100	92.849	ENSSBOG00000029561	XRN1	100	92.849	Saimiri_boliviensis_boliviensis
ENSCAFG00000007783	XRN1	99	81.350	ENSSHAG00000016207	XRN1	100	81.054	Sarcophilus_harrisii
ENSCAFG00000007783	XRN1	100	61.517	ENSSFOG00015024211	xrn1	97	62.500	Scleropages_formosus
ENSCAFG00000007783	XRN1	93	72.654	ENSSMAG00000016534	xrn1	94	72.698	Scophthalmus_maximus
ENSCAFG00000007783	XRN1	91	72.861	ENSSDUG00000010306	xrn1	92	72.986	Seriola_dumerili
ENSCAFG00000007783	XRN1	94	72.329	ENSSLDG00000021543	xrn1	96	72.452	Seriola_lalandi_dorsalis
ENSCAFG00000007783	XRN1	67	84.265	ENSSARG00000007741	-	83	84.265	Sorex_araneus
ENSCAFG00000007783	XRN1	100	76.910	ENSTGUG00000008498	XRN1	100	76.335	Taeniopygia_guttata
ENSCAFG00000007783	XRN1	94	69.984	ENSTRUG00000004895	xrn1	96	79.274	Takifugu_rubripes
ENSCAFG00000007783	XRN1	96	68.930	ENSTNIG00000017615	xrn1	96	60.615	Tetraodon_nigroviridis
ENSCAFG00000007783	XRN1	85	97.035	ENSTBEG00000003256	XRN1	85	96.419	Tupaia_belangeri
ENSCAFG00000007783	XRN1	100	90.035	ENSTTRG00000012914	XRN1	100	89.918	Tursiops_truncatus
ENSCAFG00000007783	XRN1	100	96.247	ENSUAMG00000001608	XRN1	99	99.701	Ursus_americanus
ENSCAFG00000007783	XRN1	100	98.095	ENSUMAG00000013625	XRN1	100	98.095	Ursus_maritimus
ENSCAFG00000007783	XRN1	100	91.325	ENSVPAG00000004690	XRN1	100	91.442	Vicugna_pacos
ENSCAFG00000007783	XRN1	100	99.538	ENSVVUG00000024461	XRN1	100	99.538	Vulpes_vulpes
ENSCAFG00000007783	XRN1	100	68.491	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSCAFG00000007783	XRN1	94	73.105	ENSXCOG00000007917	xrn1	92	72.861	Xiphophorus_couchianus
ENSCAFG00000007783	XRN1	92	72.467	ENSXMAG00000018320	xrn1	93	72.876	Xiphophorus_maculatus