EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSCAFG00000007812 (Gene tree)
Gene ID: 403896
Gene Symbol: SMN
Alias: -
Full Name: survival motor neuron
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 41813 bases
Position: chr2:54595447-54637259
Accession: 403896
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000011560	SMN	PF06003.12	1.4e-106	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000012477	-	2271	XM_005617216	ENSCAFP00000011560	289 (aa)	XP_005617273	K9J6P1

Gene Model

Click here to download ENSCAFG00000007812's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000007812's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000007812	SMN	97	88.612	ENSG00000205571	SMN2	87	97.500	Homo_sapiens
ENSCAFG00000007812	SMN	97	88.612	ENSG00000172062	SMN1	95	88.612	Homo_sapiens
ENSCAFG00000007812	SMN	93	51.625	ENSAPOG00000011324	smn1	94	51.613	Acanthochromis_polyacanthus
ENSCAFG00000007812	SMN	97	93.950	ENSAMEG00000003316	-	96	94.118	Ailuropoda_melanoleuca
ENSCAFG00000007812	SMN	89	50.566	ENSACIG00000019772	-	97	50.385	Amphilophus_citrinellus
ENSCAFG00000007812	SMN	93	51.625	ENSAOCG00000024444	smn1	94	51.613	Amphiprion_ocellaris
ENSCAFG00000007812	SMN	93	51.986	ENSAPEG00000016504	smn1	94	51.971	Amphiprion_percula
ENSCAFG00000007812	SMN	90	52.593	ENSATEG00000002182	smn1	79	53.585	Anabas_testudineus
ENSCAFG00000007812	SMN	69	59.091	ENSAPLG00000010912	-	97	58.586	Anas_platyrhynchos
ENSCAFG00000007812	SMN	99	54.949	ENSACAG00000010017	-	95	60.432	Anolis_carolinensis
ENSCAFG00000007812	SMN	99	83.673	ENSANAG00000032133	-	95	85.409	Aotus_nancymaae
ENSCAFG00000007812	SMN	93	51.273	ENSACLG00000007308	smn1	88	53.759	Astatotilapia_calliptera
ENSCAFG00000007812	SMN	97	86.879	ENSBTAG00000005743	SMN2	98	86.879	Bos_taurus
ENSCAFG00000007812	SMN	97	85.816	ENSCJAG00000016290	-	95	85.816	Callithrix_jacchus
ENSCAFG00000007812	SMN	99	100.000	ENSCAFG00020019229	-	93	100.000	Canis_lupus_dingo
ENSCAFG00000007812	SMN	97	86.972	ENSCHIG00000015559	-	96	86.972	Capra_hircus
ENSCAFG00000007812	SMN	99	88.502	ENSTSYG00000012058	-	96	89.531	Carlito_syrichta
ENSCAFG00000007812	SMN	76	69.469	ENSCAPG00000011021	-	100	70.485	Cavia_aperea
ENSCAFG00000007812	SMN	100	81.570	ENSCPOG00000036973	-	96	82.624	Cavia_porcellus
ENSCAFG00000007812	SMN	99	81.849	ENSCPOG00000012328	-	97	82.230	Cavia_porcellus
ENSCAFG00000007812	SMN	97	86.071	ENSCCAG00000018127	-	95	86.071	Cebus_capucinus
ENSCAFG00000007812	SMN	97	87.544	ENSCATG00000037002	-	95	87.544	Cercocebus_atys
ENSCAFG00000007812	SMN	100	79.461	ENSCLAG00000000284	-	96	80.986	Chinchilla_lanigera
ENSCAFG00000007812	SMN	97	87.189	ENSCSAG00000015688	-	95	87.189	Chlorocebus_sabaeus
ENSCAFG00000007812	SMN	87	78.175	ENSCHOG00000007346	-	100	75.794	Choloepus_hoffmanni
ENSCAFG00000007812	SMN	99	63.356	ENSCPBG00000010968	-	99	64.925	Chrysemys_picta_bellii
ENSCAFG00000007812	SMN	95	80.427	ENSCANG00000033324	-	91	82.593	Colobus_angolensis_palliatus
ENSCAFG00000007812	SMN	97	88.172	ENSCANG00000038242	-	95	88.809	Colobus_angolensis_palliatus
ENSCAFG00000007812	SMN	100	67.128	ENSCGRG00001016998	-	100	67.820	Cricetulus_griseus_chok1gshd
ENSCAFG00000007812	SMN	100	85.172	ENSCGRG00001017959	-	100	85.172	Cricetulus_griseus_chok1gshd
ENSCAFG00000007812	SMN	100	85.172	ENSCGRG00000007698	Smn1	100	85.172	Cricetulus_griseus_crigri
ENSCAFG00000007812	SMN	93	45.455	ENSCSEG00000015227	smn1	97	50.709	Cynoglossus_semilaevis
ENSCAFG00000007812	SMN	93	52.190	ENSCVAG00000007498	smn1	94	50.725	Cyprinodon_variegatus
ENSCAFG00000007812	SMN	94	48.364	ENSDARG00000018494	smn1	96	51.087	Danio_rerio
ENSCAFG00000007812	SMN	83	87.552	ENSDNOG00000007283	-	100	87.552	Dasypus_novemcinctus
ENSCAFG00000007812	SMN	79	71.491	ENSDNOG00000045949	-	92	72.146	Dasypus_novemcinctus
ENSCAFG00000007812	SMN	97	78.648	ENSDORG00000007082	Smn1	95	79.211	Dipodomys_ordii
ENSCAFG00000007812	SMN	72	72.947	ENSETEG00000001406	-	100	72.947	Echinops_telfairi
ENSCAFG00000007812	SMN	93	38.333	ENSEBUG00000011902	smn1	95	33.762	Eptatretus_burgeri
ENSCAFG00000007812	SMN	94	79.710	ENSEASG00005018000	-	89	84.252	Equus_asinus_asinus
ENSCAFG00000007812	SMN	100	89.003	ENSECAG00000015215	-	100	89.347	Equus_caballus
ENSCAFG00000007812	SMN	87	81.200	ENSEEUG00000015777	-	100	81.200	Erinaceus_europaeus
ENSCAFG00000007812	SMN	92	55.797	ENSELUG00000018067	smn1	94	54.122	Esox_lucius
ENSCAFG00000007812	SMN	100	91.724	ENSFCAG00000028292	SMN	100	91.724	Felis_catus
ENSCAFG00000007812	SMN	90	63.118	ENSFALG00000012320	-	91	63.118	Ficedula_albicollis
ENSCAFG00000007812	SMN	100	81.481	ENSFDAG00000017683	-	96	82.517	Fukomys_damarensis
ENSCAFG00000007812	SMN	62	53.591	ENSFHEG00000018508	smn1	96	51.273	Fundulus_heteroclitus
ENSCAFG00000007812	SMN	96	49.819	ENSGMOG00000017279	smn1	92	49.091	Gadus_morhua
ENSCAFG00000007812	SMN	93	61.397	ENSGALG00000002430	SMN	95	61.481	Gallus_gallus
ENSCAFG00000007812	SMN	93	53.285	ENSGAFG00000009501	smn1	94	52.000	Gambusia_affinis
ENSCAFG00000007812	SMN	93	53.731	ENSGACG00000010584	smn1	91	52.239	Gasterosteus_aculeatus
ENSCAFG00000007812	SMN	95	36.765	ENSGAGG00000013639	-	89	38.931	Gopherus_agassizii
ENSCAFG00000007812	SMN	99	62.414	ENSGAGG00000011374	-	97	63.441	Gopherus_agassizii
ENSCAFG00000007812	SMN	64	87.500	ENSGGOG00000026704	-	93	86.935	Gorilla_gorilla
ENSCAFG00000007812	SMN	95	73.913	ENSGGOG00000003872	-	96	78.947	Gorilla_gorilla
ENSCAFG00000007812	SMN	92	51.661	ENSHBUG00000013987	smn1	94	53.597	Haplochromis_burtoni
ENSCAFG00000007812	SMN	100	81.818	ENSHGLG00000001018	-	96	82.867	Heterocephalus_glaber_female
ENSCAFG00000007812	SMN	100	79.110	ENSHGLG00000001905	-	98	80.645	Heterocephalus_glaber_female
ENSCAFG00000007812	SMN	96	78.571	ENSHGLG00100018676	-	97	80.150	Heterocephalus_glaber_male
ENSCAFG00000007812	SMN	100	81.818	ENSHGLG00100011252	-	96	82.867	Heterocephalus_glaber_male
ENSCAFG00000007812	SMN	90	50.000	ENSHCOG00000017136	smn1	87	50.190	Hippocampus_comes
ENSCAFG00000007812	SMN	94	51.429	ENSIPUG00000012580	smn1	86	52.158	Ictalurus_punctatus
ENSCAFG00000007812	SMN	91	89.773	ENSSTOG00000012288	-	96	89.474	Ictidomys_tridecemlineatus
ENSCAFG00000007812	SMN	60	64.943	ENSJJAG00000014853	-	100	65.445	Jaculus_jaculus
ENSCAFG00000007812	SMN	93	52.536	ENSKMAG00000007239	smn1	96	51.908	Kryptolebias_marmoratus
ENSCAFG00000007812	SMN	93	52.688	ENSLBEG00000022550	smn1	94	54.412	Labrus_bergylta
ENSCAFG00000007812	SMN	93	36.268	ENSLACG00000009808	-	90	38.434	Latimeria_chalumnae
ENSCAFG00000007812	SMN	92	50.923	ENSLOCG00000011339	smn1	94	53.430	Lepisosteus_oculatus
ENSCAFG00000007812	SMN	100	86.689	ENSLAFG00000003425	-	96	86.689	Loxodonta_africana
ENSCAFG00000007812	SMN	97	87.900	ENSMFAG00000031523	SMN1	96	87.266	Macaca_fascicularis
ENSCAFG00000007812	SMN	97	82.918	ENSMFAG00000008812	-	95	83.513	Macaca_fascicularis
ENSCAFG00000007812	SMN	97	87.900	ENSMMUG00000020214	SMN1	95	87.900	Macaca_mulatta
ENSCAFG00000007812	SMN	97	82.206	ENSMMUG00000030594	-	95	82.796	Macaca_mulatta
ENSCAFG00000007812	SMN	76	75.113	ENSMNEG00000036423	-	86	75.113	Macaca_nemestrina
ENSCAFG00000007812	SMN	97	87.544	ENSMNEG00000035094	-	95	87.687	Macaca_nemestrina
ENSCAFG00000007812	SMN	97	87.900	ENSMLEG00000041902	-	95	87.900	Mandrillus_leucophaeus
ENSCAFG00000007812	SMN	92	49.104	ENSMAMG00000011034	smn1	94	50.549	Mastacembelus_armatus
ENSCAFG00000007812	SMN	92	51.292	ENSMZEG00005013634	smn1	94	53.650	Maylandia_zebra
ENSCAFG00000007812	SMN	68	57.286	ENSMGAG00000008889	-	95	57.360	Meleagris_gallopavo
ENSCAFG00000007812	SMN	100	83.448	ENSMAUG00000010262	Smn1	100	83.448	Mesocricetus_auratus
ENSCAFG00000007812	SMN	97	74.648	ENSMICG00000034708	-	94	88.750	Microcebus_murinus
ENSCAFG00000007812	SMN	100	83.103	ENSMOCG00000017833	Smn1	100	83.103	Microtus_ochrogaster
ENSCAFG00000007812	SMN	93	45.455	ENSMMOG00000005504	smn1	93	50.741	Mola_mola
ENSCAFG00000007812	SMN	98	70.979	ENSMODG00000001436	-	95	72.340	Monodelphis_domestica
ENSCAFG00000007812	SMN	92	50.549	ENSMALG00000008025	smn1	94	50.357	Monopterus_albus
ENSCAFG00000007812	SMN	100	83.505	MGP_CAROLIEiJ_G0018836	Smn1	100	83.849	Mus_caroli
ENSCAFG00000007812	SMN	100	83.505	ENSMUSG00000021645	Smn1	100	83.849	Mus_musculus
ENSCAFG00000007812	SMN	100	82.007	MGP_PahariEiJ_G0015911	Smn1	100	82.007	Mus_pahari
ENSCAFG00000007812	SMN	100	82.818	MGP_SPRETEiJ_G0019718	Smn1	100	83.162	Mus_spretus
ENSCAFG00000007812	SMN	95	94.909	ENSMPUG00000014470	-	98	94.909	Mustela_putorius_furo
ENSCAFG00000007812	SMN	97	88.235	ENSMLUG00000010603	-	92	88.850	Myotis_lucifugus
ENSCAFG00000007812	SMN	100	83.448	ENSNGAG00000019833	Smn1	100	83.448	Nannospalax_galili
ENSCAFG00000007812	SMN	92	53.455	ENSNBRG00000023000	smn1	94	53.791	Neolamprologus_brichardi
ENSCAFG00000007812	SMN	99	86.986	ENSNLEG00000004454	-	95	87.900	Nomascus_leucogenys
ENSCAFG00000007812	SMN	78	65.044	ENSMEUG00000011393	-	99	68.122	Notamacropus_eugenii
ENSCAFG00000007812	SMN	87	80.632	ENSOPRG00000002015	-	100	82.213	Ochotona_princeps
ENSCAFG00000007812	SMN	95	81.818	ENSODEG00000015976	-	97	81.818	Octodon_degus
ENSCAFG00000007812	SMN	93	53.069	ENSONIG00000011799	smn1	95	53.405	Oreochromis_niloticus
ENSCAFG00000007812	SMN	99	63.542	ENSOANG00000001626	-	96	66.909	Ornithorhynchus_anatinus
ENSCAFG00000007812	SMN	99	78.912	ENSOCUG00000025183	-	96	79.930	Oryctolagus_cuniculus
ENSCAFG00000007812	SMN	99	81.633	ENSOCUG00000026649	-	95	85.159	Oryctolagus_cuniculus
ENSCAFG00000007812	SMN	100	86.552	ENSOCUG00000017097	-	95	87.097	Oryctolagus_cuniculus
ENSCAFG00000007812	SMN	54	60.256	ENSORLG00000010552	smn1	94	51.971	Oryzias_latipes
ENSCAFG00000007812	SMN	93	52.985	ENSORLG00020007936	smn1	93	51.111	Oryzias_latipes_hni
ENSCAFG00000007812	SMN	54	59.615	ENSORLG00015022425	smn1	94	51.254	Oryzias_latipes_hsok
ENSCAFG00000007812	SMN	93	53.986	ENSOMEG00000007824	smn1	94	54.380	Oryzias_melastigma
ENSCAFG00000007812	SMN	92	76.838	ENSOGAG00000031414	-	94	76.838	Otolemur_garnettii
ENSCAFG00000007812	SMN	95	84.727	ENSOARG00000005425	-	100	84.727	Ovis_aries
ENSCAFG00000007812	SMN	97	88.256	ENSPPAG00000036640	-	95	88.256	Pan_paniscus
ENSCAFG00000007812	SMN	100	92.069	ENSPPRG00000005575	-	100	92.069	Panthera_pardus
ENSCAFG00000007812	SMN	100	91.753	ENSPTIG00000007745	-	100	91.753	Panthera_tigris_altaica
ENSCAFG00000007812	SMN	97	87.676	ENSPTRG00000016955	-	95	87.676	Pan_troglodytes
ENSCAFG00000007812	SMN	99	86.986	ENSPANG00000013601	-	95	87.900	Papio_anubis
ENSCAFG00000007812	SMN	96	82.734	ENSPANG00000000253	-	93	83.696	Papio_anubis
ENSCAFG00000007812	SMN	92	51.799	ENSPKIG00000011096	smn1	94	52.060	Paramormyrops_kingsleyae
ENSCAFG00000007812	SMN	93	60.777	ENSPSIG00000014787	-	90	58.007	Pelodiscus_sinensis
ENSCAFG00000007812	SMN	93	49.458	ENSPMGG00000012285	smn1	94	49.621	Periophthalmus_magnuspinnatus
ENSCAFG00000007812	SMN	97	40.830	ENSPMAG00000005004	smn1	91	41.971	Petromyzon_marinus
ENSCAFG00000007812	SMN	98	70.629	ENSPCIG00000025764	-	97	71.986	Phascolarctos_cinereus
ENSCAFG00000007812	SMN	93	53.846	ENSPFOG00000007786	smn1	94	53.480	Poecilia_formosa
ENSCAFG00000007812	SMN	93	54.212	ENSPLAG00000012071	smn1	94	53.846	Poecilia_latipinna
ENSCAFG00000007812	SMN	93	53.846	ENSPMEG00000017085	smn1	94	53.480	Poecilia_mexicana
ENSCAFG00000007812	SMN	93	54.745	ENSPREG00000005824	smn1	94	54.212	Poecilia_reticulata
ENSCAFG00000007812	SMN	86	55.823	ENSPPYG00000019189	-	99	55.020	Pongo_abelii
ENSCAFG00000007812	SMN	92	87.640	ENSPPYG00000015533	-	96	87.640	Pongo_abelii
ENSCAFG00000007812	SMN	92	84.444	ENSPCAG00000004187	-	100	84.444	Procavia_capensis
ENSCAFG00000007812	SMN	90	68.302	ENSPCOG00000022307	-	100	70.722	Propithecus_coquereli
ENSCAFG00000007812	SMN	97	93.214	ENSPVAG00000005977	-	96	92.883	Pteropus_vampyrus
ENSCAFG00000007812	SMN	92	53.455	ENSPNYG00000014148	smn1	94	53.791	Pundamilia_nyererei
ENSCAFG00000007812	SMN	93	48.551	ENSPNAG00000014007	smn1	83	48.754	Pygocentrus_nattereri
ENSCAFG00000007812	SMN	100	80.756	ENSRNOG00000018067	Smn1	100	80.756	Rattus_norvegicus
ENSCAFG00000007812	SMN	97	87.544	ENSRBIG00000037052	-	95	88.172	Rhinopithecus_bieti
ENSCAFG00000007812	SMN	93	74.170	ENSRBIG00000036775	-	91	74.815	Rhinopithecus_bieti
ENSCAFG00000007812	SMN	98	72.632	ENSRROG00000031088	-	95	72.695	Rhinopithecus_roxellana
ENSCAFG00000007812	SMN	97	87.544	ENSRROG00000039399	-	95	88.172	Rhinopithecus_roxellana
ENSCAFG00000007812	SMN	97	85.305	ENSSBOG00000011665	-	95	85.305	Saimiri_boliviensis_boliviensis
ENSCAFG00000007812	SMN	84	78.884	ENSSBOG00000020112	-	87	79.283	Saimiri_boliviensis_boliviensis
ENSCAFG00000007812	SMN	100	70.205	ENSSHAG00000001499	-	100	70.036	Sarcophilus_harrisii
ENSCAFG00000007812	SMN	93	50.542	ENSSFOG00015015507	smn1	94	51.493	Scleropages_formosus
ENSCAFG00000007812	SMN	93	50.368	ENSSMAG00000007922	smn1	94	52.000	Scophthalmus_maximus
ENSCAFG00000007812	SMN	93	51.079	ENSSDUG00000018533	smn1	94	50.714	Seriola_dumerili
ENSCAFG00000007812	SMN	93	51.079	ENSSLDG00000021135	smn1	94	50.714	Seriola_lalandi_dorsalis
ENSCAFG00000007812	SMN	98	63.158	ENSSPUG00000000373	-	93	66.418	Sphenodon_punctatus
ENSCAFG00000007812	SMN	93	51.812	ENSSPAG00000004345	smn1	94	50.355	Stegastes_partitus
ENSCAFG00000007812	SMN	97	91.135	ENSSSCG00000016970	-	96	91.135	Sus_scrofa
ENSCAFG00000007812	SMN	97	67.972	ENSSSCG00000029127	-	94	67.972	Sus_scrofa
ENSCAFG00000007812	SMN	74	61.033	ENSSSCG00000033865	-	95	60.185	Sus_scrofa
ENSCAFG00000007812	SMN	94	60.432	ENSTGUG00000001548	-	96	58.394	Taeniopygia_guttata
ENSCAFG00000007812	SMN	93	47.584	ENSTRUG00000000736	smn	95	48.201	Takifugu_rubripes
ENSCAFG00000007812	SMN	93	49.470	ENSTNIG00000009892	smn1	95	48.057	Tetraodon_nigroviridis
ENSCAFG00000007812	SMN	66	86.979	ENSTBEG00000002399	-	100	87.440	Tupaia_belangeri
ENSCAFG00000007812	SMN	97	85.765	ENSTTRG00000005080	-	96	86.833	Tursiops_truncatus
ENSCAFG00000007812	SMN	64	93.478	ENSUAMG00000024947	-	77	92.488	Ursus_americanus
ENSCAFG00000007812	SMN	97	94.662	ENSUMAG00000007842	-	74	94.810	Ursus_maritimus
ENSCAFG00000007812	SMN	92	77.068	ENSVPAG00000009887	-	96	77.068	Vicugna_pacos
ENSCAFG00000007812	SMN	100	100.000	ENSVVUG00000006934	-	100	100.000	Vulpes_vulpes
ENSCAFG00000007812	SMN	95	54.093	ENSXETG00000018189	smn2	95	54.737	Xenopus_tropicalis
ENSCAFG00000007812	SMN	91	36.331	ENSXETG00000004912	-	78	59.016	Xenopus_tropicalis
ENSCAFG00000007812	SMN	93	53.025	ENSXMAG00000001521	smn1	95	51.825	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	-	ISS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005829	cytosol	-	ISS	Component
GO:0006353	DNA-templated transcription, termination	-	ISS	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0015030	Cajal body	-	ISS	Component
GO:0030018	Z disc	-	IEA	Component
GO:0032797	SMN complex	-	ISS	Component
GO:0034719	SMN-Sm protein complex	-	ISS	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISS	Component
GO:0043005	neuron projection	-	ISS	Component
GO:0043204	perikaryon	-	ISS	Component
GO:0097504	Gemini of coiled bodies	-	ISS	Component