EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000008556 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 15542 bases
Position: chr2:58535078-58550619
Accession: 53480
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000012562	HVSL	PF09749.9	3.7e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000013577	-	3030	XM_005617504	ENSCAFP00000012562	374 (aa)	XP_853879	F6XDF2

Gene Model

Click here to download ENSCAFG00000008556's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000008556's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000008556	USB1	73	79.412	ENSG00000103005	USB1	99	86.854	Homo_sapiens
ENSCAFG00000008556	USB1	71	46.595	ENSAPOG00000011942	usb1	83	50.000	Acanthochromis_polyacanthus
ENSCAFG00000008556	USB1	73	89.706	ENSAMEG00000017205	USB1	99	88.971	Ailuropoda_melanoleuca
ENSCAFG00000008556	USB1	71	51.292	ENSACIG00000012234	usb1	99	50.186	Amphilophus_citrinellus
ENSCAFG00000008556	USB1	71	47.331	ENSAOCG00000014831	usb1	82	51.293	Amphiprion_ocellaris
ENSCAFG00000008556	USB1	71	47.687	ENSAPEG00000000296	usb1	82	51.724	Amphiprion_percula
ENSCAFG00000008556	USB1	71	48.387	ENSATEG00000009348	usb1	82	51.724	Anabas_testudineus
ENSCAFG00000008556	USB1	60	71.111	ENSAPLG00000002756	USB1	99	71.556	Anas_platyrhynchos
ENSCAFG00000008556	USB1	60	62.719	ENSACAG00000015481	USB1	99	62.719	Anolis_carolinensis
ENSCAFG00000008556	USB1	73	79.044	ENSANAG00000035640	USB1	99	80.515	Aotus_nancymaae
ENSCAFG00000008556	USB1	71	48.746	ENSACLG00000020586	usb1	99	48.746	Astatotilapia_calliptera
ENSCAFG00000008556	USB1	60	51.786	ENSAMXG00000040146	usb1	75	51.327	Astyanax_mexicanus
ENSCAFG00000008556	USB1	73	82.721	ENSBTAG00000015758	USB1	99	81.985	Bos_taurus
ENSCAFG00000008556	USB1	73	80.147	ENSCJAG00000011733	USB1	99	81.985	Callithrix_jacchus
ENSCAFG00000008556	USB1	73	93.407	ENSCAFG00020009263	USB1	100	93.407	Canis_lupus_dingo
ENSCAFG00000008556	USB1	73	81.250	ENSCHIG00000024290	USB1	99	80.515	Capra_hircus
ENSCAFG00000008556	USB1	73	81.618	ENSTSYG00000006997	USB1	99	83.088	Carlito_syrichta
ENSCAFG00000008556	USB1	61	70.000	ENSCAPG00000009057	USB1	99	70.000	Cavia_aperea
ENSCAFG00000008556	USB1	73	79.412	ENSCPOG00000014325	USB1	99	78.676	Cavia_porcellus
ENSCAFG00000008556	USB1	73	79.412	ENSCCAG00000022132	USB1	99	80.882	Cebus_capucinus
ENSCAFG00000008556	USB1	73	80.882	ENSCATG00000032174	USB1	99	81.985	Cercocebus_atys
ENSCAFG00000008556	USB1	73	81.618	ENSCSAG00000004783	USB1	99	82.721	Chlorocebus_sabaeus
ENSCAFG00000008556	USB1	73	63.177	ENSCPBG00000026943	USB1	99	64.388	Chrysemys_picta_bellii
ENSCAFG00000008556	USB1	60	31.381	ENSCING00000011490	-	86	31.381	Ciona_intestinalis
ENSCAFG00000008556	USB1	60	31.169	ENSCSAVG00000000894	-	83	31.169	Ciona_savignyi
ENSCAFG00000008556	USB1	73	80.147	ENSCANG00000037135	USB1	99	81.250	Colobus_angolensis_palliatus
ENSCAFG00000008556	USB1	73	81.985	ENSCGRG00001011243	USB1	99	81.618	Cricetulus_griseus_chok1gshd
ENSCAFG00000008556	USB1	73	81.985	ENSCGRG00000013252	USB1	99	81.618	Cricetulus_griseus_crigri
ENSCAFG00000008556	USB1	71	46.886	ENSCSEG00000013881	usb1	84	50.000	Cynoglossus_semilaevis
ENSCAFG00000008556	USB1	60	47.577	ENSCVAG00000009252	usb1	97	48.018	Cyprinodon_variegatus
ENSCAFG00000008556	USB1	60	51.121	ENSDARG00000003841	usb1	99	46.350	Danio_rerio
ENSCAFG00000008556	USB1	73	79.044	ENSDORG00000001888	Usb1	99	79.044	Dipodomys_ordii
ENSCAFG00000008556	USB1	55	39.906	FBgn0037713	CG16790	79	39.906	Drosophila_melanogaster
ENSCAFG00000008556	USB1	73	67.279	ENSETEG00000019682	USB1	99	66.912	Echinops_telfairi
ENSCAFG00000008556	USB1	59	50.000	ENSEBUG00000005889	usb1	78	50.000	Eptatretus_burgeri
ENSCAFG00000008556	USB1	73	83.088	ENSEASG00005005484	USB1	99	82.353	Equus_asinus_asinus
ENSCAFG00000008556	USB1	73	83.456	ENSECAG00000019493	USB1	91	82.721	Equus_caballus
ENSCAFG00000008556	USB1	60	48.458	ENSELUG00000010974	usb1	83	48.458	Esox_lucius
ENSCAFG00000008556	USB1	73	86.397	ENSFCAG00000002693	USB1	99	86.029	Felis_catus
ENSCAFG00000008556	USB1	73	60.440	ENSFALG00000006876	USB1	99	60.145	Ficedula_albicollis
ENSCAFG00000008556	USB1	73	82.721	ENSFDAG00000010052	USB1	99	81.985	Fukomys_damarensis
ENSCAFG00000008556	USB1	63	46.311	ENSFHEG00000012334	usb1	80	50.249	Fundulus_heteroclitus
ENSCAFG00000008556	USB1	59	50.450	ENSGMOG00000004228	usb1	99	50.450	Gadus_morhua
ENSCAFG00000008556	USB1	65	61.753	ENSGALG00000035604	USB1	99	61.538	Gallus_gallus
ENSCAFG00000008556	USB1	71	47.826	ENSGAFG00000021890	usb1	99	46.350	Gambusia_affinis
ENSCAFG00000008556	USB1	62	49.138	ENSGACG00000003257	usb1	99	46.931	Gasterosteus_aculeatus
ENSCAFG00000008556	USB1	73	65.568	ENSGAGG00000022572	USB1	99	63.971	Gopherus_agassizii
ENSCAFG00000008556	USB1	73	80.147	ENSGGOG00000017147	USB1	99	81.618	Gorilla_gorilla
ENSCAFG00000008556	USB1	62	52.155	ENSHBUG00000009823	usb1	99	49.462	Haplochromis_burtoni
ENSCAFG00000008556	USB1	73	82.353	ENSHGLG00000016078	USB1	97	81.250	Heterocephalus_glaber_female
ENSCAFG00000008556	USB1	73	82.353	ENSHGLG00100005562	USB1	97	81.250	Heterocephalus_glaber_male
ENSCAFG00000008556	USB1	58	52.995	ENSHCOG00000015633	usb1	86	53.363	Hippocampus_comes
ENSCAFG00000008556	USB1	60	53.363	ENSIPUG00000008601	usb1	77	53.363	Ictalurus_punctatus
ENSCAFG00000008556	USB1	73	83.456	ENSSTOG00000007548	USB1	99	83.456	Ictidomys_tridecemlineatus
ENSCAFG00000008556	USB1	73	82.721	ENSJJAG00000021859	Usb1	99	82.721	Jaculus_jaculus
ENSCAFG00000008556	USB1	60	51.770	ENSKMAG00000007200	usb1	98	45.161	Kryptolebias_marmoratus
ENSCAFG00000008556	USB1	53	50.505	ENSLBEG00000008452	usb1	64	51.053	Labrus_bergylta
ENSCAFG00000008556	USB1	59	57.965	ENSLACG00000000105	USB1	78	57.965	Latimeria_chalumnae
ENSCAFG00000008556	USB1	68	53.125	ENSLOCG00000000465	usb1	81	56.769	Lepisosteus_oculatus
ENSCAFG00000008556	USB1	73	63.139	ENSLAFG00000002267	USB1	99	62.868	Loxodonta_africana
ENSCAFG00000008556	USB1	73	81.250	ENSMFAG00000003926	USB1	99	82.353	Macaca_fascicularis
ENSCAFG00000008556	USB1	73	81.250	ENSMMUG00000022669	USB1	99	82.353	Macaca_mulatta
ENSCAFG00000008556	USB1	73	80.882	ENSMNEG00000042487	USB1	99	81.985	Macaca_nemestrina
ENSCAFG00000008556	USB1	73	81.250	ENSMLEG00000028756	USB1	99	82.353	Mandrillus_leucophaeus
ENSCAFG00000008556	USB1	71	48.188	ENSMAMG00000015092	usb1	83	50.644	Mastacembelus_armatus
ENSCAFG00000008556	USB1	60	53.363	ENSMZEG00005010008	usb1	99	49.104	Maylandia_zebra
ENSCAFG00000008556	USB1	73	79.412	ENSMAUG00000007832	Usb1	99	79.044	Mesocricetus_auratus
ENSCAFG00000008556	USB1	73	81.618	ENSMICG00000004900	USB1	99	81.985	Microcebus_murinus
ENSCAFG00000008556	USB1	73	78.676	ENSMOCG00000022647	Usb1	99	78.309	Microtus_ochrogaster
ENSCAFG00000008556	USB1	61	51.101	ENSMMOG00000000490	usb1	99	46.816	Mola_mola
ENSCAFG00000008556	USB1	73	65.091	ENSMODG00000014067	USB1	99	66.545	Monodelphis_domestica
ENSCAFG00000008556	USB1	64	51.440	ENSMALG00000005930	usb1	82	52.586	Monopterus_albus
ENSCAFG00000008556	USB1	73	77.574	MGP_CAROLIEiJ_G0031421	Usb1	100	80.531	Mus_caroli
ENSCAFG00000008556	USB1	73	78.309	ENSMUSG00000031792	Usb1	100	81.416	Mus_musculus
ENSCAFG00000008556	USB1	73	77.206	MGP_PahariEiJ_G0023019	Usb1	100	82.051	Mus_pahari
ENSCAFG00000008556	USB1	73	77.574	MGP_SPRETEiJ_G0032540	Usb1	99	77.574	Mus_spretus
ENSCAFG00000008556	USB1	73	86.765	ENSMPUG00000004684	USB1	96	86.397	Mustela_putorius_furo
ENSCAFG00000008556	USB1	61	88.261	ENSMLUG00000007400	USB1	99	88.261	Myotis_lucifugus
ENSCAFG00000008556	USB1	73	83.456	ENSNGAG00000009703	Usb1	99	83.456	Nannospalax_galili
ENSCAFG00000008556	USB1	62	47.414	ENSNBRG00000008747	usb1	99	52.113	Neolamprologus_brichardi
ENSCAFG00000008556	USB1	69	79.457	ENSNLEG00000003340	USB1	100	81.008	Nomascus_leucogenys
ENSCAFG00000008556	USB1	73	79.044	ENSODEG00000016214	USB1	99	79.044	Octodon_degus
ENSCAFG00000008556	USB1	71	49.104	ENSONIG00000011063	usb1	81	53.097	Oreochromis_niloticus
ENSCAFG00000008556	USB1	60	73.214	ENSOANG00000012118	USB1	94	73.214	Ornithorhynchus_anatinus
ENSCAFG00000008556	USB1	62	47.639	ENSORLG00000012479	usb1	99	44.444	Oryzias_latipes
ENSCAFG00000008556	USB1	62	47.639	ENSORLG00020018671	usb1	99	44.610	Oryzias_latipes_hni
ENSCAFG00000008556	USB1	62	47.639	ENSORLG00015009679	usb1	86	47.639	Oryzias_latipes_hsok
ENSCAFG00000008556	USB1	62	48.069	ENSOMEG00000012930	usb1	99	45.255	Oryzias_melastigma
ENSCAFG00000008556	USB1	73	73.897	ENSOGAG00000003273	USB1	99	75.368	Otolemur_garnettii
ENSCAFG00000008556	USB1	66	84.490	ENSOARG00000001107	USB1	89	86.638	Ovis_aries
ENSCAFG00000008556	USB1	73	79.779	ENSPPAG00000042137	USB1	99	81.250	Pan_paniscus
ENSCAFG00000008556	USB1	73	85.662	ENSPPRG00000024797	USB1	99	85.662	Panthera_pardus
ENSCAFG00000008556	USB1	73	86.029	ENSPTIG00000007506	USB1	99	85.662	Panthera_tigris_altaica
ENSCAFG00000008556	USB1	73	73.162	ENSPTRG00000008172	USB1	99	87.793	Pan_troglodytes
ENSCAFG00000008556	USB1	73	81.250	ENSPANG00000025138	USB1	99	82.353	Papio_anubis
ENSCAFG00000008556	USB1	67	50.800	ENSPKIG00000015109	usb1	75	53.812	Paramormyrops_kingsleyae
ENSCAFG00000008556	USB1	60	53.304	ENSPSIG00000004305	USB1	99	53.304	Pelodiscus_sinensis
ENSCAFG00000008556	USB1	60	51.111	ENSPMGG00000017725	usb1	86	51.111	Periophthalmus_magnuspinnatus
ENSCAFG00000008556	USB1	73	80.952	ENSPEMG00000016183	Usb1	99	80.952	Peromyscus_maniculatus_bairdii
ENSCAFG00000008556	USB1	60	51.556	ENSPMAG00000000462	usb1	95	51.556	Petromyzon_marinus
ENSCAFG00000008556	USB1	71	48.000	ENSPFOG00000011130	usb1	99	47.273	Poecilia_formosa
ENSCAFG00000008556	USB1	71	47.273	ENSPLAG00000009820	usb1	99	46.545	Poecilia_latipinna
ENSCAFG00000008556	USB1	71	48.551	ENSPMEG00000006402	usb1	99	47.273	Poecilia_mexicana
ENSCAFG00000008556	USB1	63	48.980	ENSPREG00000001047	usb1	98	47.541	Poecilia_reticulata
ENSCAFG00000008556	USB1	69	76.923	ENSPPYG00000007401	USB1	100	78.462	Pongo_abelii
ENSCAFG00000008556	USB1	73	81.985	ENSPCOG00000022612	USB1	99	83.088	Propithecus_coquereli
ENSCAFG00000008556	USB1	73	80.515	ENSPVAG00000004613	USB1	99	79.779	Pteropus_vampyrus
ENSCAFG00000008556	USB1	71	49.462	ENSPNYG00000022262	usb1	99	49.104	Pundamilia_nyererei
ENSCAFG00000008556	USB1	60	52.018	ENSPNAG00000011736	usb1	76	52.018	Pygocentrus_nattereri
ENSCAFG00000008556	USB1	73	79.779	ENSRNOG00000013216	Usb1	99	79.779	Rattus_norvegicus
ENSCAFG00000008556	USB1	73	75.000	ENSRBIG00000044466	USB1	99	89.202	Rhinopithecus_bieti
ENSCAFG00000008556	USB1	73	81.250	ENSRROG00000029211	USB1	99	82.353	Rhinopithecus_roxellana
ENSCAFG00000008556	USB1	73	79.412	ENSSBOG00000029362	USB1	99	80.882	Saimiri_boliviensis_boliviensis
ENSCAFG00000008556	USB1	58	72.936	ENSSHAG00000006993	USB1	94	70.886	Sarcophilus_harrisii
ENSCAFG00000008556	USB1	61	56.828	ENSSFOG00015023663	usb1	71	56.828	Scleropages_formosus
ENSCAFG00000008556	USB1	75	45.973	ENSSMAG00000015834	usb1	83	50.202	Scophthalmus_maximus
ENSCAFG00000008556	USB1	60	54.667	ENSSDUG00000002949	usb1	99	50.187	Seriola_dumerili
ENSCAFG00000008556	USB1	60	54.709	ENSSLDG00000014174	usb1	99	48.201	Seriola_lalandi_dorsalis
ENSCAFG00000008556	USB1	57	68.545	ENSSPUG00000006741	USB1	99	68.545	Sphenodon_punctatus
ENSCAFG00000008556	USB1	71	47.350	ENSSPAG00000007484	usb1	81	51.293	Stegastes_partitus
ENSCAFG00000008556	USB1	73	83.088	ENSSSCG00000002807	USB1	99	82.353	Sus_scrofa
ENSCAFG00000008556	USB1	56	68.750	ENSTGUG00000004792	USB1	82	68.095	Taeniopygia_guttata
ENSCAFG00000008556	USB1	71	45.421	ENSTRUG00000021069	usb1	99	45.693	Takifugu_rubripes
ENSCAFG00000008556	USB1	71	44.569	ENSTNIG00000000626	usb1	97	43.820	Tetraodon_nigroviridis
ENSCAFG00000008556	USB1	61	58.261	ENSTBEG00000001507	USB1	99	58.009	Tupaia_belangeri
ENSCAFG00000008556	USB1	73	88.971	ENSUAMG00000016823	USB1	99	88.235	Ursus_americanus
ENSCAFG00000008556	USB1	57	92.019	ENSUMAG00000021369	USB1	99	92.019	Ursus_maritimus
ENSCAFG00000008556	USB1	100	82.086	ENSVVUG00000023700	USB1	90	98.718	Vulpes_vulpes
ENSCAFG00000008556	USB1	58	56.621	ENSXETG00000013795	usb1	90	56.696	Xenopus_tropicalis
ENSCAFG00000008556	USB1	62	50.427	ENSXMAG00000024687	usb1	80	47.347	Xiphophorus_maculatus