EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000009573 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 20954 bases
Position: chr24:32327494-32348447
Accession: 54723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000014080	PABP	PF00658.18	1.7e-27	1	1
ENSCAFP00000014080	RRM_5	PF13893.6	2.8e-08	1	1
ENSCAFP00000014080	RRM_1	PF00076.22	1.3e-88	1	4
ENSCAFP00000014080	RRM_1	PF00076.22	1.3e-88	2	4
ENSCAFP00000014080	RRM_1	PF00076.22	1.3e-88	3	4
ENSCAFP00000014080	RRM_1	PF00076.22	1.3e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000015215	-	1932	XM_534430	ENSCAFP00000014080	644 (aa)	-	E2RND1

Gene Model

Click here to download ENSCAFG00000009573's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000009573's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000009573	PABPC1L	58	60.674	ENSCAFG00000017452	PABPC5	94	60.833
ENSCAFG00000009573	PABPC1L	56	31.720	ENSCAFG00000003341	TIA1	71	31.720
ENSCAFG00000009573	PABPC1L	100	63.889	ENSCAFG00000003081	PABPC4	97	64.869
ENSCAFG00000009573	PABPC1L	60	30.263	ENSCAFG00000001688	ELAVL2	85	30.263
ENSCAFG00000009573	PABPC1L	100	64.198	ENSCAFG00000000567	PABPC1	97	64.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000009573	PABPC1L	100	74.654	ENSG00000101104	PABPC1L	99	93.519	Homo_sapiens
ENSCAFG00000009573	PABPC1L	100	61.824	ENSAPOG00000010842	pabpc1l	99	62.597	Acanthochromis_polyacanthus
ENSCAFG00000009573	PABPC1L	100	78.924	ENSAMEG00000004099	PABPC1L	100	79.460	Ailuropoda_melanoleuca
ENSCAFG00000009573	PABPC1L	99	70.227	ENSACIG00000021004	-	99	70.227	Amphilophus_citrinellus
ENSCAFG00000009573	PABPC1L	100	62.597	ENSAOCG00000006167	-	99	62.751	Amphiprion_ocellaris
ENSCAFG00000009573	PABPC1L	100	69.635	ENSAPEG00000010558	-	97	81.188	Amphiprion_percula
ENSCAFG00000009573	PABPC1L	80	81.013	ENSATEG00000007428	pabpc1l	99	63.053	Anabas_testudineus
ENSCAFG00000009573	PABPC1L	99	68.585	ENSAPLG00000008415	PABPC1L	99	68.413	Anas_platyrhynchos
ENSCAFG00000009573	PABPC1L	99	68.944	ENSACAG00000011841	PABPC1L	98	68.944	Anolis_carolinensis
ENSCAFG00000009573	PABPC1L	100	73.425	ENSANAG00000026826	PABPC1L	99	73.425	Aotus_nancymaae
ENSCAFG00000009573	PABPC1L	100	63.679	ENSACLG00000024791	pabpc1l	99	63.679	Astatotilapia_calliptera
ENSCAFG00000009573	PABPC1L	100	65.798	ENSAMXG00000013552	pabpc1l	99	65.798	Astyanax_mexicanus
ENSCAFG00000009573	PABPC1L	62	81.579	ENSBTAG00000016849	PABPC1L	81	81.579	Bos_taurus
ENSCAFG00000009573	PABPC1L	56	97.619	ENSBTAG00000055300	-	100	97.619	Bos_taurus
ENSCAFG00000009573	PABPC1L	100	74.034	ENSCJAG00000017628	PABPC1L	99	74.034	Callithrix_jacchus
ENSCAFG00000009573	PABPC1L	57	77.586	ENSCJAG00000038506	-	100	77.586	Callithrix_jacchus
ENSCAFG00000009573	PABPC1L	100	81.762	ENSCAFG00020013828	PABPC1L	99	81.762	Canis_lupus_dingo
ENSCAFG00000009573	PABPC1L	99	76.369	ENSCHIG00000025759	PABPC1L	91	76.369	Capra_hircus
ENSCAFG00000009573	PABPC1L	100	72.994	ENSTSYG00000006645	PABPC1L	99	72.994	Carlito_syrichta
ENSCAFG00000009573	PABPC1L	99	67.986	ENSCAPG00000014519	PABPC1L	98	67.986	Cavia_aperea
ENSCAFG00000009573	PABPC1L	100	70.884	ENSCPOG00000013633	PABPC1L	99	70.884	Cavia_porcellus
ENSCAFG00000009573	PABPC1L	100	74.540	ENSCCAG00000023338	PABPC1L	99	74.034	Cebus_capucinus
ENSCAFG00000009573	PABPC1L	100	75.232	ENSCATG00000034065	PABPC1L	99	75.851	Cercocebus_atys
ENSCAFG00000009573	PABPC1L	100	72.868	ENSCLAG00000005298	PABPC1L	99	73.023	Chinchilla_lanigera
ENSCAFG00000009573	PABPC1L	100	75.347	ENSCSAG00000014242	PABPC1L	99	75.963	Chlorocebus_sabaeus
ENSCAFG00000009573	PABPC1L	68	81.532	ENSCPBG00000017755	-	99	81.532	Chrysemys_picta_bellii
ENSCAFG00000009573	PABPC1L	51	80.916	ENSCPBG00000007810	-	81	80.916	Chrysemys_picta_bellii
ENSCAFG00000009573	PABPC1L	99	48.617	ENSCING00000002796	-	97	48.617	Ciona_intestinalis
ENSCAFG00000009573	PABPC1L	99	67.016	ENSCSAVG00000003102	-	100	81.507	Ciona_savignyi
ENSCAFG00000009573	PABPC1L	78	76.471	ENSCSAVG00000004246	-	94	66.832	Ciona_savignyi
ENSCAFG00000009573	PABPC1L	100	71.938	ENSCANG00000037530	PABPC1L	99	71.803	Colobus_angolensis_palliatus
ENSCAFG00000009573	PABPC1L	99	67.287	ENSCGRG00001021938	Pabpc1l	98	67.287	Cricetulus_griseus_chok1gshd
ENSCAFG00000009573	PABPC1L	99	67.287	ENSCGRG00000007946	Pabpc1l	98	67.287	Cricetulus_griseus_crigri
ENSCAFG00000009573	PABPC1L	99	63.653	ENSCSEG00000021295	pabpc1l	98	63.653	Cynoglossus_semilaevis
ENSCAFG00000009573	PABPC1L	100	63.117	ENSCVAG00000015943	-	99	87.023	Cyprinodon_variegatus
ENSCAFG00000009573	PABPC1L	100	64.869	ENSDARG00000002597	pabpc1l	88	87.692	Danio_rerio
ENSCAFG00000009573	PABPC1L	100	76.816	ENSDNOG00000048450	PABPC1L	99	76.816	Dasypus_novemcinctus
ENSCAFG00000009573	PABPC1L	100	72.910	ENSDORG00000001067	Pabpc1l	99	72.910	Dipodomys_ordii
ENSCAFG00000009573	PABPC1L	72	90.244	ENSETEG00000009969	PABPC1L	53	90.244	Echinops_telfairi
ENSCAFG00000009573	PABPC1L	56	97.024	ENSEASG00005023408	-	100	97.024	Equus_asinus_asinus
ENSCAFG00000009573	PABPC1L	51	91.304	ENSEASG00005023407	-	65	91.304	Equus_asinus_asinus
ENSCAFG00000009573	PABPC1L	64	81.277	ENSECAG00000040139	-	83	81.277	Equus_caballus
ENSCAFG00000009573	PABPC1L	100	72.783	ENSEEUG00000005978	PABPC1L	99	72.783	Erinaceus_europaeus
ENSCAFG00000009573	PABPC1L	100	64.472	ENSELUG00000001811	pabpc1l	93	79.775	Esox_lucius
ENSCAFG00000009573	PABPC1L	100	78.947	ENSFCAG00000011692	PABPC1L	99	78.947	Felis_catus
ENSCAFG00000009573	PABPC1L	68	81.777	ENSFALG00000005372	PABPC1L	74	81.777	Ficedula_albicollis
ENSCAFG00000009573	PABPC1L	100	71.957	ENSFDAG00000008291	PABPC1L	98	72.111	Fukomys_damarensis
ENSCAFG00000009573	PABPC1L	100	63.817	ENSFHEG00000003398	pabpc1l	99	63.817	Fundulus_heteroclitus
ENSCAFG00000009573	PABPC1L	100	63.790	ENSGMOG00000004437	pabpc1l	98	63.790	Gadus_morhua
ENSCAFG00000009573	PABPC1L	99	80.435	ENSGALG00000004123	PABPC1L	99	84.211	Gallus_gallus
ENSCAFG00000009573	PABPC1L	100	61.471	ENSGAFG00000021057	pabpc1l	99	61.471	Gambusia_affinis
ENSCAFG00000009573	PABPC1L	100	62.346	ENSGACG00000002792	pabpc1l	99	62.346	Gasterosteus_aculeatus
ENSCAFG00000009573	PABPC1L	100	81.166	ENSGAGG00000000589	PABPC1L	97	81.166	Gopherus_agassizii
ENSCAFG00000009573	PABPC1L	100	74.654	ENSGGOG00000004584	PABPC1L	99	75.077	Gorilla_gorilla
ENSCAFG00000009573	PABPC1L	100	63.524	ENSHBUG00000006134	pabpc1l	91	76.179	Haplochromis_burtoni
ENSCAFG00000009573	PABPC1L	100	73.190	ENSHGLG00000008434	PABPC1L	99	73.733	Heterocephalus_glaber_female
ENSCAFG00000009573	PABPC1L	56	82.584	ENSHGLG00100019506	-	100	82.584	Heterocephalus_glaber_male
ENSCAFG00000009573	PABPC1L	100	73.190	ENSHGLG00100012151	PABPC1L	99	73.733	Heterocephalus_glaber_male
ENSCAFG00000009573	PABPC1L	88	78.450	ENSHCOG00000009270	pabpc1l	97	78.450	Hippocampus_comes
ENSCAFG00000009573	PABPC1L	100	66.410	ENSIPUG00000012602	pabpc1l	99	66.410	Ictalurus_punctatus
ENSCAFG00000009573	PABPC1L	57	60.345	ENSIPUG00000006780	-	85	60.345	Ictalurus_punctatus
ENSCAFG00000009573	PABPC1L	57	60.345	ENSIPUG00000006760	-	88	60.345	Ictalurus_punctatus
ENSCAFG00000009573	PABPC1L	100	74.923	ENSSTOG00000003739	PABPC1L	99	74.923	Ictidomys_tridecemlineatus
ENSCAFG00000009573	PABPC1L	99	57.093	ENSJJAG00000022406	Pabpc1l	98	55.435	Jaculus_jaculus
ENSCAFG00000009573	PABPC1L	100	62.980	ENSKMAG00000016847	pabpc1l	99	62.980	Kryptolebias_marmoratus
ENSCAFG00000009573	PABPC1L	100	62.751	ENSLBEG00000010084	pabpc1l	99	62.751	Labrus_bergylta
ENSCAFG00000009573	PABPC1L	100	64.580	ENSLACG00000005762	PABPC1L	98	64.580	Latimeria_chalumnae
ENSCAFG00000009573	PABPC1L	100	66.924	ENSLOCG00000007519	pabpc1l	98	66.924	Lepisosteus_oculatus
ENSCAFG00000009573	PABPC1L	100	73.853	ENSLAFG00000003553	PABPC1L	99	73.853	Loxodonta_africana
ENSCAFG00000009573	PABPC1L	100	75.542	ENSMFAG00000040365	PABPC1L	99	76.124	Macaca_fascicularis
ENSCAFG00000009573	PABPC1L	100	73.953	ENSMNEG00000032298	PABPC1L	99	74.574	Macaca_nemestrina
ENSCAFG00000009573	PABPC1L	100	75.232	ENSMLEG00000043139	PABPC1L	99	75.851	Mandrillus_leucophaeus
ENSCAFG00000009573	PABPC1L	98	62.421	ENSMAMG00000011854	pabpc1l	97	62.421	Mastacembelus_armatus
ENSCAFG00000009573	PABPC1L	100	63.679	ENSMZEG00005023713	pabpc1l	99	63.679	Maylandia_zebra
ENSCAFG00000009573	PABPC1L	100	70.124	ENSMGAG00000003674	PABPC1L	98	70.124	Meleagris_gallopavo
ENSCAFG00000009573	PABPC1L	99	67.388	ENSMOCG00000013186	Pabpc1l	98	67.388	Microtus_ochrogaster
ENSCAFG00000009573	PABPC1L	100	62.751	ENSMMOG00000020574	-	90	87.692	Mola_mola
ENSCAFG00000009573	PABPC1L	95	69.887	ENSMODG00000016198	PABPC1L	99	70.219	Monodelphis_domestica
ENSCAFG00000009573	PABPC1L	98	62.696	ENSMALG00000021622	pabpc1l	100	62.696	Monopterus_albus
ENSCAFG00000009573	PABPC1L	99	67.857	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	67.857	Mus_caroli
ENSCAFG00000009573	PABPC1L	99	67.081	ENSMUSG00000054582	Pabpc1l	99	67.081	Mus_musculus
ENSCAFG00000009573	PABPC1L	99	68.210	MGP_PahariEiJ_G0026071	Pabpc1l	99	68.210	Mus_pahari
ENSCAFG00000009573	PABPC1L	99	67.857	MGP_SPRETEiJ_G0025549	Pabpc1l	99	67.857	Mus_spretus
ENSCAFG00000009573	PABPC1L	100	78.947	ENSMPUG00000017646	PABPC1L	99	78.947	Mustela_putorius_furo
ENSCAFG00000009573	PABPC1L	99	73.416	ENSMLUG00000006324	PABPC1L	97	73.416	Myotis_lucifugus
ENSCAFG00000009573	PABPC1L	100	68.576	ENSNGAG00000010458	Pabpc1l	99	68.576	Nannospalax_galili
ENSCAFG00000009573	PABPC1L	99	70.320	ENSNBRG00000016633	pabpc1l	99	70.320	Neolamprologus_brichardi
ENSCAFG00000009573	PABPC1L	73	80.952	ENSMEUG00000007905	-	77	80.952	Notamacropus_eugenii
ENSCAFG00000009573	PABPC1L	100	73.242	ENSOPRG00000011846	PABPC1L	99	73.242	Ochotona_princeps
ENSCAFG00000009573	PABPC1L	80	87.324	ENSODEG00000015482	PABPC1L	90	87.324	Octodon_degus
ENSCAFG00000009573	PABPC1L	55	75.625	ENSODEG00000002920	-	97	75.625	Octodon_degus
ENSCAFG00000009573	PABPC1L	100	63.679	ENSONIG00000017314	pabpc1l	99	63.679	Oreochromis_niloticus
ENSCAFG00000009573	PABPC1L	91	60.365	ENSOANG00000015793	-	100	60.365	Ornithorhynchus_anatinus
ENSCAFG00000009573	PABPC1L	100	70.677	ENSOCUG00000003005	PABPC1L	99	70.827	Oryctolagus_cuniculus
ENSCAFG00000009573	PABPC1L	99	73.913	ENSORLG00000010322	pabpc1l	99	73.913	Oryzias_latipes
ENSCAFG00000009573	PABPC1L	99	73.913	ENSORLG00020021193	pabpc1l	99	73.913	Oryzias_latipes_hni
ENSCAFG00000009573	PABPC1L	98	73.913	ENSORLG00015017018	pabpc1l	98	73.913	Oryzias_latipes_hsok
ENSCAFG00000009573	PABPC1L	100	61.152	ENSOMEG00000010789	pabpc1l	99	61.152	Oryzias_melastigma
ENSCAFG00000009573	PABPC1L	100	74.194	ENSOGAG00000032999	PABPC1L	99	74.194	Otolemur_garnettii
ENSCAFG00000009573	PABPC1L	100	78.328	ENSOARG00000004578	PABPC1L	99	78.328	Ovis_aries
ENSCAFG00000009573	PABPC1L	100	74.501	ENSPPAG00000039677	PABPC1L	99	74.768	Pan_paniscus
ENSCAFG00000009573	PABPC1L	60	83.333	ENSPPRG00000019327	-	98	83.333	Panthera_pardus
ENSCAFG00000009573	PABPC1L	99	78.750	ENSPTIG00000006524	PABPC1L	99	78.750	Panthera_tigris_altaica
ENSCAFG00000009573	PABPC1L	60	93.210	ENSPTRG00000013531	PABPC1L	99	93.210	Pan_troglodytes
ENSCAFG00000009573	PABPC1L	100	75.232	ENSPANG00000018788	PABPC1L	99	75.851	Papio_anubis
ENSCAFG00000009573	PABPC1L	100	63.775	ENSPKIG00000007322	pabpc1l	99	63.775	Paramormyrops_kingsleyae
ENSCAFG00000009573	PABPC1L	51	83.206	ENSPKIG00000016810	-	93	83.206	Paramormyrops_kingsleyae
ENSCAFG00000009573	PABPC1L	65	84.286	ENSPSIG00000013289	PABPC1L	99	84.286	Pelodiscus_sinensis
ENSCAFG00000009573	PABPC1L	67	66.146	ENSPMGG00000023121	-	89	66.146	Periophthalmus_magnuspinnatus
ENSCAFG00000009573	PABPC1L	60	86.364	ENSPMGG00000023117	pabpc1l	92	86.364	Periophthalmus_magnuspinnatus
ENSCAFG00000009573	PABPC1L	99	66.874	ENSPEMG00000020671	Pabpc1l	98	66.977	Peromyscus_maniculatus_bairdii
ENSCAFG00000009573	PABPC1L	100	64.969	ENSPFOG00000013241	pabpc1l	99	64.969	Poecilia_formosa
ENSCAFG00000009573	PABPC1L	100	64.969	ENSPLAG00000017490	-	99	71.861	Poecilia_latipinna
ENSCAFG00000009573	PABPC1L	50	88.462	ENSPLAG00000023686	-	92	88.462	Poecilia_latipinna
ENSCAFG00000009573	PABPC1L	50	88.462	ENSPMEG00000009185	-	88	88.462	Poecilia_mexicana
ENSCAFG00000009573	PABPC1L	100	64.352	ENSPMEG00000007677	pabpc1l	99	64.352	Poecilia_mexicana
ENSCAFG00000009573	PABPC1L	64	77.240	ENSPREG00000015886	pabpc1l	99	77.240	Poecilia_reticulata
ENSCAFG00000009573	PABPC1L	100	74.847	ENSPPYG00000011042	PABPC1L	99	75.307	Pongo_abelii
ENSCAFG00000009573	PABPC1L	61	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSCAFG00000009573	PABPC1L	100	73.798	ENSPCOG00000020630	PABPC1L	99	74.498	Propithecus_coquereli
ENSCAFG00000009573	PABPC1L	100	75.231	ENSPVAG00000012663	PABPC1L	99	75.231	Pteropus_vampyrus
ENSCAFG00000009573	PABPC1L	99	70.320	ENSPNYG00000004101	pabpc1l	99	70.320	Pundamilia_nyererei
ENSCAFG00000009573	PABPC1L	100	59.908	ENSPNAG00000021248	pabpc1l	99	59.908	Pygocentrus_nattereri
ENSCAFG00000009573	PABPC1L	69	77.852	ENSRNOG00000012750	Pabpc1l	99	66.462	Rattus_norvegicus
ENSCAFG00000009573	PABPC1L	100	74.501	ENSRBIG00000035381	PABPC1L	99	75.038	Rhinopithecus_bieti
ENSCAFG00000009573	PABPC1L	100	74.387	ENSRROG00000044498	PABPC1L	99	74.387	Rhinopithecus_roxellana
ENSCAFG00000009573	PABPC1L	100	73.652	ENSSBOG00000009532	-	99	73.652	Saimiri_boliviensis_boliviensis
ENSCAFG00000009573	PABPC1L	98	62.885	ENSSHAG00000011446	PABPC1L	99	62.885	Sarcophilus_harrisii
ENSCAFG00000009573	PABPC1L	100	65.997	ENSSFOG00015017304	pabpc1l	99	65.997	Scleropages_formosus
ENSCAFG00000009573	PABPC1L	100	63.385	ENSSMAG00000010516	pabpc1l	93	87.597	Scophthalmus_maximus
ENSCAFG00000009573	PABPC1L	100	63.927	ENSSDUG00000014743	pabpc1l	99	63.927	Seriola_dumerili
ENSCAFG00000009573	PABPC1L	99	71.954	ENSSLDG00000006981	pabpc1l	98	79.452	Seriola_lalandi_dorsalis
ENSCAFG00000009573	PABPC1L	99	68.111	ENSSPUG00000004233	PABPC1L	98	68.111	Sphenodon_punctatus
ENSCAFG00000009573	PABPC1L	83	74.468	ENSSPAG00000017137	pabpc1l	95	74.468	Stegastes_partitus
ENSCAFG00000009573	PABPC1L	100	76.899	ENSSSCG00000007382	PABPC1L	99	76.899	Sus_scrofa
ENSCAFG00000009573	PABPC1L	100	67.933	ENSTGUG00000005114	PABPC1L	99	67.933	Taeniopygia_guttata
ENSCAFG00000009573	PABPC1L	98	63.651	ENSTRUG00000011085	pabpc1l	97	63.651	Takifugu_rubripes
ENSCAFG00000009573	PABPC1L	99	62.058	ENSTNIG00000017903	pabpc1l	98	62.058	Tetraodon_nigroviridis
ENSCAFG00000009573	PABPC1L	73	93.493	ENSTBEG00000002851	PABPC1L	62	93.493	Tupaia_belangeri
ENSCAFG00000009573	PABPC1L	95	74.797	ENSTTRG00000007618	PABPC1L	100	75.119	Tursiops_truncatus
ENSCAFG00000009573	PABPC1L	100	91.383	ENSUAMG00000017682	PABPC1L	98	91.383	Ursus_americanus
ENSCAFG00000009573	PABPC1L	64	93.629	ENSUMAG00000025436	PABPC1L	92	93.629	Ursus_maritimus
ENSCAFG00000009573	PABPC1L	99	99.209	ENSVVUG00000018939	PABPC1L	98	99.209	Vulpes_vulpes
ENSCAFG00000009573	PABPC1L	100	63.957	ENSXETG00000022831	pabpc1l	98	63.957	Xenopus_tropicalis
ENSCAFG00000009573	PABPC1L	100	63.833	ENSXCOG00000005459	pabpc1l	99	83.688	Xiphophorus_couchianus
ENSCAFG00000009573	PABPC1L	100	64.264	ENSXMAG00000017135	pabpc1l	99	71.861	Xiphophorus_maculatus