EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000011533 (Gene tree)
Gene ID: 479200
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 82751 bases
Position: chr4:5359446-5442196
Accession: 479200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000040868	SpoU_methylase	PF00588.19	1.6e-31	1	1
ENSCAFP00000016946	SpoU_methylase	PF00588.19	1.7e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000045343	TARBP1-202	4251	XM_005618849	ENSCAFP00000040868	1415 (aa)	-	J9P5E1
ENSCAFT00000018299	TARBP1-201	4308	-	ENSCAFP00000016946	1435 (aa)	-	F1PWU0

Gene Model

Click here to download ENSCAFG00000011533's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000011533's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000011533	TARBP1	100	86.017	ENSG00000059588	TARBP1	88	85.714	Homo_sapiens
ENSCAFG00000011533	TARBP1	98	45.042	ENSAPOG00000016419	si:dkey-85a20.4	86	45.042	Acanthochromis_polyacanthus
ENSCAFG00000011533	TARBP1	97	92.988	ENSAMEG00000003359	TARBP1	100	92.988	Ailuropoda_melanoleuca
ENSCAFG00000011533	TARBP1	98	45.184	ENSATEG00000020266	si:dkey-85a20.4	85	45.127	Anabas_testudineus
ENSCAFG00000011533	TARBP1	96	67.299	ENSAPLG00000007666	TARBP1	99	67.808	Anas_platyrhynchos
ENSCAFG00000011533	TARBP1	99	60.042	ENSACAG00000001142	TARBP1	89	60.042	Anolis_carolinensis
ENSCAFG00000011533	TARBP1	99	82.825	ENSANAG00000022031	TARBP1	90	82.744	Aotus_nancymaae
ENSCAFG00000011533	TARBP1	100	86.142	ENSBTAG00000004517	TARBP1	88	86.142	Bos_taurus
ENSCAFG00000011533	TARBP1	100	85.099	ENSCJAG00000018155	TARBP1	88	84.808	Callithrix_jacchus
ENSCAFG00000011533	TARBP1	100	99.506	ENSCAFG00020027141	TARBP1	88	99.373	Canis_lupus_dingo
ENSCAFG00000011533	TARBP1	99	85.340	ENSCHIG00000011437	TARBP1	88	85.185	Capra_hircus
ENSCAFG00000011533	TARBP1	94	83.271	ENSTSYG00000010382	TARBP1	99	83.470	Carlito_syrichta
ENSCAFG00000011533	TARBP1	90	69.436	ENSCAPG00000010831	TARBP1	99	69.436	Cavia_aperea
ENSCAFG00000011533	TARBP1	99	77.935	ENSCPOG00000013995	TARBP1	89	77.599	Cavia_porcellus
ENSCAFG00000011533	TARBP1	100	85.664	ENSCCAG00000037278	TARBP1	88	85.366	Cebus_capucinus
ENSCAFG00000011533	TARBP1	100	85.593	ENSCATG00000011754	TARBP1	88	85.296	Cercocebus_atys
ENSCAFG00000011533	TARBP1	93	78.915	ENSCLAG00000003655	TARBP1	96	78.915	Chinchilla_lanigera
ENSCAFG00000011533	TARBP1	91	86.059	ENSCSAG00000010100	TARBP1	99	86.059	Chlorocebus_sabaeus
ENSCAFG00000011533	TARBP1	93	68.703	ENSCPBG00000005587	TARBP1	86	70.588	Chrysemys_picta_bellii
ENSCAFG00000011533	TARBP1	96	86.113	ENSCANG00000034343	TARBP1	99	86.113	Colobus_angolensis_palliatus
ENSCAFG00000011533	TARBP1	99	75.887	ENSCGRG00001016690	Tarbp1	90	75.297	Cricetulus_griseus_chok1gshd
ENSCAFG00000011533	TARBP1	99	75.957	ENSCGRG00000016893	Tarbp1	96	75.367	Cricetulus_griseus_crigri
ENSCAFG00000011533	TARBP1	98	42.143	ENSCSEG00000005255	si:dkey-85a20.4	86	45.390	Cynoglossus_semilaevis
ENSCAFG00000011533	TARBP1	97	46.571	ENSDARG00000079055	si:dkey-85a20.4	99	53.460	Danio_rerio
ENSCAFG00000011533	TARBP1	99	85.004	ENSDNOG00000008637	TARBP1	87	84.716	Dasypus_novemcinctus
ENSCAFG00000011533	TARBP1	92	74.306	ENSDORG00000007984	Tarbp1	100	74.306	Dipodomys_ordii
ENSCAFG00000011533	TARBP1	100	89.281	ENSEASG00005000252	TARBP1	89	89.013	Equus_asinus_asinus
ENSCAFG00000011533	TARBP1	100	89.140	ENSECAG00000023673	TARBP1	88	88.943	Equus_caballus
ENSCAFG00000011533	TARBP1	97	44.272	ENSELUG00000012193	si:dkey-85a20.4	86	44.272	Esox_lucius
ENSCAFG00000011533	TARBP1	100	87.571	ENSFCAG00000014183	TARBP1	88	87.604	Felis_catus
ENSCAFG00000011533	TARBP1	92	67.661	ENSFALG00000013565	TARBP1	100	67.173	Ficedula_albicollis
ENSCAFG00000011533	TARBP1	91	75.725	ENSFDAG00000001308	TARBP1	99	75.725	Fukomys_damarensis
ENSCAFG00000011533	TARBP1	94	53.561	ENSFHEG00000007565	si:dkey-85a20.4	85	53.561	Fundulus_heteroclitus
ENSCAFG00000011533	TARBP1	95	43.331	ENSGMOG00000004549	si:dkey-85a20.4	98	43.403	Gadus_morhua
ENSCAFG00000011533	TARBP1	99	61.987	ENSGALG00000011000	TARBP1	89	62.491	Gallus_gallus
ENSCAFG00000011533	TARBP1	98	44.492	ENSGAFG00000007387	si:dkey-85a20.4	85	44.594	Gambusia_affinis
ENSCAFG00000011533	TARBP1	98	44.554	ENSGACG00000005865	si:dkey-85a20.4	99	44.554	Gasterosteus_aculeatus
ENSCAFG00000011533	TARBP1	96	71.053	ENSGAGG00000012102	TARBP1	91	69.810	Gopherus_agassizii
ENSCAFG00000011533	TARBP1	97	83.479	ENSGGOG00000022879	TARBP1	99	83.479	Gorilla_gorilla
ENSCAFG00000011533	TARBP1	98	45.959	ENSHBUG00000008877	si:dkey-85a20.4	85	45.959	Haplochromis_burtoni
ENSCAFG00000011533	TARBP1	99	78.784	ENSHGLG00000011592	TARBP1	89	78.297	Heterocephalus_glaber_female
ENSCAFG00000011533	TARBP1	99	78.490	ENSHGLG00100015169	TARBP1	96	78.348	Heterocephalus_glaber_male
ENSCAFG00000011533	TARBP1	99	42.867	ENSIPUG00000005249	si:dkey-85a20.4	84	43.008	Ictalurus_punctatus
ENSCAFG00000011533	TARBP1	95	76.689	ENSSTOG00000032291	TARBP1	97	76.124	Ictidomys_tridecemlineatus
ENSCAFG00000011533	TARBP1	97	73.397	ENSJJAG00000017840	Tarbp1	94	73.397	Jaculus_jaculus
ENSCAFG00000011533	TARBP1	76	46.988	ENSKMAG00000017546	si:dkey-85a20.4	71	46.862	Kryptolebias_marmoratus
ENSCAFG00000011533	TARBP1	75	49.802	ENSLBEG00000012132	si:dkey-85a20.4	74	50.335	Labrus_bergylta
ENSCAFG00000011533	TARBP1	99	53.434	ENSLACG00000004337	TARBP1	87	53.471	Latimeria_chalumnae
ENSCAFG00000011533	TARBP1	98	49.220	ENSLOCG00000016214	si:dkey-85a20.4	85	49.185	Lepisosteus_oculatus
ENSCAFG00000011533	TARBP1	98	85.653	ENSLAFG00000011394	TARBP1	91	84.969	Loxodonta_africana
ENSCAFG00000011533	TARBP1	100	82.910	ENSMFAG00000041068	TARBP1	89	82.648	Macaca_fascicularis
ENSCAFG00000011533	TARBP1	100	82.839	ENSMMUG00000021703	TARBP1	88	82.578	Macaca_mulatta
ENSCAFG00000011533	TARBP1	100	85.523	ENSMNEG00000045002	TARBP1	88	85.226	Macaca_nemestrina
ENSCAFG00000011533	TARBP1	96	86.431	ENSMLEG00000044182	TARBP1	99	86.431	Mandrillus_leucophaeus
ENSCAFG00000011533	TARBP1	99	45.048	ENSMAMG00000021760	si:dkey-85a20.4	89	45.048	Mastacembelus_armatus
ENSCAFG00000011533	TARBP1	98	46.186	ENSMZEG00005005751	si:dkey-85a20.4	85	46.186	Maylandia_zebra
ENSCAFG00000011533	TARBP1	99	75.745	ENSMAUG00000020968	Tarbp1	90	75.227	Mesocricetus_auratus
ENSCAFG00000011533	TARBP1	94	81.244	ENSMICG00000015280	TARBP1	84	81.244	Microcebus_murinus
ENSCAFG00000011533	TARBP1	99	74.663	ENSMOCG00000004128	Tarbp1	90	74.160	Microtus_ochrogaster
ENSCAFG00000011533	TARBP1	97	43.741	ENSMMOG00000007795	si:dkey-85a20.4	85	44.026	Mola_mola
ENSCAFG00000011533	TARBP1	99	75.214	ENSMODG00000008504	TARBP1	87	73.892	Monodelphis_domestica
ENSCAFG00000011533	TARBP1	97	44.421	ENSMALG00000002916	si:dkey-85a20.4	85	44.588	Monopterus_albus
ENSCAFG00000011533	TARBP1	99	74.734	MGP_CAROLIEiJ_G0031729	Tarbp1	90	74.230	Mus_caroli
ENSCAFG00000011533	TARBP1	99	74.308	ENSMUSG00000090290	Tarbp1	90	73.810	Mus_musculus
ENSCAFG00000011533	TARBP1	99	74.788	MGP_PahariEiJ_G0023326	Tarbp1	90	74.250	Mus_pahari
ENSCAFG00000011533	TARBP1	99	74.450	MGP_SPRETEiJ_G0032846	Tarbp1	90	73.950	Mus_spretus
ENSCAFG00000011533	TARBP1	88	89.317	ENSMPUG00000002802	TARBP1	100	89.049	Mustela_putorius_furo
ENSCAFG00000011533	TARBP1	97	77.108	ENSMLUG00000002414	TARBP1	100	77.012	Myotis_lucifugus
ENSCAFG00000011533	TARBP1	100	86.017	ENSNLEG00000002518	TARBP1	88	85.714	Nomascus_leucogenys
ENSCAFG00000011533	TARBP1	65	75.847	ENSMEUG00000011370	-	55	75.847	Notamacropus_eugenii
ENSCAFG00000011533	TARBP1	81	84.053	ENSOPRG00000013822	TARBP1	71	83.775	Ochotona_princeps
ENSCAFG00000011533	TARBP1	99	77.581	ENSODEG00000005238	TARBP1	92	77.320	Octodon_degus
ENSCAFG00000011533	TARBP1	98	45.839	ENSONIG00000009789	si:dkey-85a20.4	99	45.839	Oreochromis_niloticus
ENSCAFG00000011533	TARBP1	99	84.065	ENSOCUG00000017418	TARBP1	87	83.857	Oryctolagus_cuniculus
ENSCAFG00000011533	TARBP1	98	43.140	ENSORLG00000010529	si:dkey-85a20.4	85	43.548	Oryzias_latipes
ENSCAFG00000011533	TARBP1	98	43.432	ENSORLG00020019264	si:dkey-85a20.4	85	43.579	Oryzias_latipes_hni
ENSCAFG00000011533	TARBP1	98	43.190	ENSORLG00015003276	si:dkey-85a20.4	85	43.697	Oryzias_latipes_hsok
ENSCAFG00000011533	TARBP1	99	82.332	ENSOGAG00000002379	TARBP1	88	82.078	Otolemur_garnettii
ENSCAFG00000011533	TARBP1	99	85.325	ENSOARG00000003434	TARBP1	95	85.325	Ovis_aries
ENSCAFG00000011533	TARBP1	96	86.510	ENSPPAG00000028097	TARBP1	99	86.510	Pan_paniscus
ENSCAFG00000011533	TARBP1	98	86.551	ENSPPRG00000013561	TARBP1	92	84.702	Panthera_pardus
ENSCAFG00000011533	TARBP1	95	90.327	ENSPTIG00000009281	TARBP1	100	89.993	Panthera_tigris_altaica
ENSCAFG00000011533	TARBP1	100	85.805	ENSPTRG00000002124	TARBP1	88	85.505	Pan_troglodytes
ENSCAFG00000011533	TARBP1	100	85.734	ENSPANG00000021933	TARBP1	88	85.436	Papio_anubis
ENSCAFG00000011533	TARBP1	96	46.999	ENSPKIG00000016716	si:dkey-85a20.4	82	46.936	Paramormyrops_kingsleyae
ENSCAFG00000011533	TARBP1	91	69.464	ENSPSIG00000010699	TARBP1	99	69.171	Pelodiscus_sinensis
ENSCAFG00000011533	TARBP1	99	75.957	ENSPEMG00000006888	Tarbp1	94	75.543	Peromyscus_maniculatus_bairdii
ENSCAFG00000011533	TARBP1	91	81.553	ENSPCIG00000029710	TARBP1	87	81.553	Phascolarctos_cinereus
ENSCAFG00000011533	TARBP1	98	44.789	ENSPFOG00000013020	si:dkey-85a20.4	99	44.789	Poecilia_formosa
ENSCAFG00000011533	TARBP1	98	45.000	ENSPLAG00000006044	si:dkey-85a20.4	85	45.000	Poecilia_latipinna
ENSCAFG00000011533	TARBP1	98	44.901	ENSPMEG00000017857	si:dkey-85a20.4	85	45.000	Poecilia_mexicana
ENSCAFG00000011533	TARBP1	98	44.859	ENSPREG00000022753	si:dkey-85a20.4	85	44.859	Poecilia_reticulata
ENSCAFG00000011533	TARBP1	90	85.392	ENSPPYG00000000102	TARBP1	87	85.149	Pongo_abelii
ENSCAFG00000011533	TARBP1	84	86.364	ENSPCAG00000004808	TARBP1	74	86.364	Procavia_capensis
ENSCAFG00000011533	TARBP1	99	83.686	ENSPCOG00000005666	TARBP1	88	83.624	Propithecus_coquereli
ENSCAFG00000011533	TARBP1	99	69.144	ENSPVAG00000014798	TARBP1	88	69.064	Pteropus_vampyrus
ENSCAFG00000011533	TARBP1	98	45.248	ENSPNYG00000019135	si:dkey-85a20.4	85	45.248	Pundamilia_nyererei
ENSCAFG00000011533	TARBP1	99	69.908	ENSRNOG00000053574	Tarbp1	90	69.468	Rattus_norvegicus
ENSCAFG00000011533	TARBP1	100	79.802	ENSRBIG00000043362	TARBP1	97	79.582	Rhinopithecus_bieti
ENSCAFG00000011533	TARBP1	100	85.311	ENSRROG00000029527	TARBP1	92	85.017	Rhinopithecus_roxellana
ENSCAFG00000011533	TARBP1	98	83.989	ENSSBOG00000034503	TARBP1	99	83.989	Saimiri_boliviensis_boliviensis
ENSCAFG00000011533	TARBP1	96	75.037	ENSSHAG00000000013	TARBP1	100	75.037	Sarcophilus_harrisii
ENSCAFG00000011533	TARBP1	96	45.054	ENSSFOG00015002660	si:dkey-85a20.4	97	45.602	Scleropages_formosus
ENSCAFG00000011533	TARBP1	96	46.121	ENSSMAG00000007081	si:dkey-85a20.4	82	46.336	Scophthalmus_maximus
ENSCAFG00000011533	TARBP1	98	43.817	ENSSDUG00000023566	si:dkey-85a20.4	85	44.063	Seriola_dumerili
ENSCAFG00000011533	TARBP1	98	45.948	ENSSLDG00000020200	si:dkey-85a20.4	86	45.816	Seriola_lalandi_dorsalis
ENSCAFG00000011533	TARBP1	87	84.793	ENSSARG00000012207	TARBP1	76	84.793	Sorex_araneus
ENSCAFG00000011533	TARBP1	99	65.743	ENSSPUG00000015364	TARBP1	89	65.214	Sphenodon_punctatus
ENSCAFG00000011533	TARBP1	99	44.240	ENSSPAG00000007213	si:dkey-85a20.4	88	44.414	Stegastes_partitus
ENSCAFG00000011533	TARBP1	100	86.630	ENSSSCG00000010160	TARBP1	88	88.115	Sus_scrofa
ENSCAFG00000011533	TARBP1	92	67.202	ENSTGUG00000010214	TARBP1	100	67.202	Taeniopygia_guttata
ENSCAFG00000011533	TARBP1	96	43.832	ENSTNIG00000016586	si:dkey-85a20.4	99	44.147	Tetraodon_nigroviridis
ENSCAFG00000011533	TARBP1	93	84.668	ENSTTRG00000008707	TARBP1	85	84.668	Tursiops_truncatus
ENSCAFG00000011533	TARBP1	94	92.470	ENSUMAG00000006730	TARBP1	99	92.470	Ursus_maritimus
ENSCAFG00000011533	TARBP1	87	90.625	ENSVPAG00000007665	TARBP1	85	90.625	Vicugna_pacos
ENSCAFG00000011533	TARBP1	98	98.988	ENSVVUG00000007460	TARBP1	98	98.848	Vulpes_vulpes
ENSCAFG00000011533	TARBP1	96	55.765	ENSXETG00000016224	tarbp1	99	55.765	Xenopus_tropicalis
ENSCAFG00000011533	TARBP1	89	49.386	ENSXCOG00000011779	si:dkey-85a20.4	93	49.386	Xiphophorus_couchianus
ENSCAFG00000011533	TARBP1	74	43.373	ENSXMAG00000009600	si:dkey-85a20.4	100	43.386	Xiphophorus_maculatus