EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000012559 (Gene tree)
Gene ID: 477538
Gene Symbol: SF3A1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 19967 bases
Position: chr26:23485065-23505031
Accession: 46067
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000018619	PRP21_like_P	PF12230.8	7.6e-52	1	1
ENSCAFP00000018619	Surp	PF01805.20	5.9e-46	1	2
ENSCAFP00000018619	Surp	PF01805.20	5.9e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000020076	-	4075	XM_003433398	ENSCAFP00000018619	793 (aa)	XP_534733	E2RDL8

Gene Model

Click here to download ENSCAFG00000012559's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000012559's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000012559	SF3A1	100	98.613	ENSG00000099995	SF3A1	100	98.613	Homo_sapiens
ENSCAFG00000012559	SF3A1	100	83.522	ENSAPOG00000020465	sf3a1	99	84.910	Acanthochromis_polyacanthus
ENSCAFG00000012559	SF3A1	100	99.371	ENSAMEG00000007737	SF3A1	100	99.371	Ailuropoda_melanoleuca
ENSCAFG00000012559	SF3A1	100	84.277	ENSACIG00000020672	sf3a1	99	84.910	Amphilophus_citrinellus
ENSCAFG00000012559	SF3A1	100	83.250	ENSAOCG00000003060	sf3a1	99	84.910	Amphiprion_ocellaris
ENSCAFG00000012559	SF3A1	100	83.375	ENSAPEG00000010735	sf3a1	99	85.038	Amphiprion_percula
ENSCAFG00000012559	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	98	85.219	Anabas_testudineus
ENSCAFG00000012559	SF3A1	95	94.188	ENSAPLG00000009057	SF3A1	99	93.290	Anas_platyrhynchos
ENSCAFG00000012559	SF3A1	100	85.714	ENSACAG00000009415	SF3A1	100	87.069	Anolis_carolinensis
ENSCAFG00000012559	SF3A1	100	98.991	ENSANAG00000032045	SF3A1	100	98.991	Aotus_nancymaae
ENSCAFG00000012559	SF3A1	100	84.355	ENSACLG00000012622	sf3a1	99	85.403	Astatotilapia_calliptera
ENSCAFG00000012559	SF3A1	99	83.312	ENSAMXG00000005382	sf3a1	99	84.170	Astyanax_mexicanus
ENSCAFG00000012559	SF3A1	100	99.496	ENSBTAG00000003390	SF3A1	100	99.496	Bos_taurus
ENSCAFG00000012559	SF3A1	84	43.447	WBGene00004188	prp-21	90	44.867	Caenorhabditis_elegans
ENSCAFG00000012559	SF3A1	100	98.865	ENSCJAG00000010370	SF3A1	100	98.865	Callithrix_jacchus
ENSCAFG00000012559	SF3A1	100	100.000	ENSCAFG00020000838	SF3A1	100	100.000	Canis_lupus_dingo
ENSCAFG00000012559	SF3A1	100	99.369	ENSCHIG00000018642	SF3A1	100	99.369	Capra_hircus
ENSCAFG00000012559	SF3A1	100	99.369	ENSTSYG00000004739	SF3A1	100	99.369	Carlito_syrichta
ENSCAFG00000012559	SF3A1	94	81.308	ENSCAPG00000015414	SF3A1	98	81.308	Cavia_aperea
ENSCAFG00000012559	SF3A1	100	98.865	ENSCPOG00000014589	SF3A1	100	98.865	Cavia_porcellus
ENSCAFG00000012559	SF3A1	100	98.991	ENSCCAG00000032006	SF3A1	100	98.991	Cebus_capucinus
ENSCAFG00000012559	SF3A1	100	98.991	ENSCATG00000029241	SF3A1	100	98.991	Cercocebus_atys
ENSCAFG00000012559	SF3A1	100	98.235	ENSCLAG00000006508	SF3A1	100	98.235	Chinchilla_lanigera
ENSCAFG00000012559	SF3A1	100	98.865	ENSCSAG00000009470	SF3A1	100	98.865	Chlorocebus_sabaeus
ENSCAFG00000012559	SF3A1	61	99.262	ENSCHOG00000005201	SF3A1	69	99.262	Choloepus_hoffmanni
ENSCAFG00000012559	SF3A1	100	90.932	ENSCPBG00000007595	SF3A1	100	91.058	Chrysemys_picta_bellii
ENSCAFG00000012559	SF3A1	94	52.116	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSCAFG00000012559	SF3A1	96	51.484	ENSCSAVG00000005608	-	92	61.864	Ciona_savignyi
ENSCAFG00000012559	SF3A1	100	98.865	ENSCANG00000033564	SF3A1	100	98.865	Colobus_angolensis_palliatus
ENSCAFG00000012559	SF3A1	100	98.361	ENSCGRG00001008933	Sf3a1	100	98.361	Cricetulus_griseus_chok1gshd
ENSCAFG00000012559	SF3A1	100	98.361	ENSCGRG00000006127	Sf3a1	100	98.361	Cricetulus_griseus_crigri
ENSCAFG00000012559	SF3A1	99	81.726	ENSCSEG00000010792	sf3a1	99	81.795	Cynoglossus_semilaevis
ENSCAFG00000012559	SF3A1	100	83.019	ENSCVAG00000004560	sf3a1	98	84.245	Cyprinodon_variegatus
ENSCAFG00000012559	SF3A1	100	82.286	ENSDARG00000041887	sf3a1	97	84.615	Danio_rerio
ENSCAFG00000012559	SF3A1	100	98.868	ENSDNOG00000010629	SF3A1	100	98.868	Dasypus_novemcinctus
ENSCAFG00000012559	SF3A1	100	99.243	ENSDORG00000005613	Sf3a1	100	99.243	Dipodomys_ordii
ENSCAFG00000012559	SF3A1	79	61.495	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSCAFG00000012559	SF3A1	89	95.726	ENSETEG00000017194	SF3A1	100	95.726	Echinops_telfairi
ENSCAFG00000012559	SF3A1	100	65.176	ENSEBUG00000001285	sf3a1	96	67.284	Eptatretus_burgeri
ENSCAFG00000012559	SF3A1	100	99.369	ENSEASG00005010254	SF3A1	100	99.369	Equus_asinus_asinus
ENSCAFG00000012559	SF3A1	100	99.369	ENSECAG00000023962	SF3A1	100	99.369	Equus_caballus
ENSCAFG00000012559	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSCAFG00000012559	SF3A1	100	82.206	ENSELUG00000022578	sf3a1	98	82.458	Esox_lucius
ENSCAFG00000012559	SF3A1	100	99.748	ENSFCAG00000011932	SF3A1	100	99.748	Felis_catus
ENSCAFG00000012559	SF3A1	95	93.122	ENSFALG00000006944	SF3A1	100	91.814	Ficedula_albicollis
ENSCAFG00000012559	SF3A1	100	98.739	ENSFDAG00000009560	SF3A1	100	98.739	Fukomys_damarensis
ENSCAFG00000012559	SF3A1	100	83.774	ENSFHEG00000010866	sf3a1	98	85.026	Fundulus_heteroclitus
ENSCAFG00000012559	SF3A1	100	81.234	ENSGMOG00000016024	sf3a1	99	80.612	Gadus_morhua
ENSCAFG00000012559	SF3A1	95	94.180	ENSGALG00000007937	SF3A1	100	92.443	Gallus_gallus
ENSCAFG00000012559	SF3A1	100	83.145	ENSGAFG00000009111	sf3a1	97	84.837	Gambusia_affinis
ENSCAFG00000012559	SF3A1	100	82.116	ENSGACG00000011893	sf3a1	97	83.246	Gasterosteus_aculeatus
ENSCAFG00000012559	SF3A1	96	91.196	ENSGAGG00000000762	SF3A1	99	91.327	Gopherus_agassizii
ENSCAFG00000012559	SF3A1	100	98.613	ENSGGOG00000012631	SF3A1	100	98.613	Gorilla_gorilla
ENSCAFG00000012559	SF3A1	100	84.355	ENSHBUG00000015795	sf3a1	99	85.403	Haplochromis_burtoni
ENSCAFG00000012559	SF3A1	100	98.991	ENSHGLG00000007907	SF3A1	100	98.991	Heterocephalus_glaber_female
ENSCAFG00000012559	SF3A1	100	98.991	ENSHGLG00100013799	SF3A1	100	98.991	Heterocephalus_glaber_male
ENSCAFG00000012559	SF3A1	100	80.377	ENSHCOG00000015423	sf3a1	99	80.774	Hippocampus_comes
ENSCAFG00000012559	SF3A1	96	82.422	ENSIPUG00000002470	sf3a1	98	82.682	Ictalurus_punctatus
ENSCAFG00000012559	SF3A1	100	99.117	ENSSTOG00000013892	SF3A1	100	99.117	Ictidomys_tridecemlineatus
ENSCAFG00000012559	SF3A1	100	98.741	ENSJJAG00000022566	Sf3a1	100	98.741	Jaculus_jaculus
ENSCAFG00000012559	SF3A1	100	82.516	ENSKMAG00000002400	sf3a1	98	84.505	Kryptolebias_marmoratus
ENSCAFG00000012559	SF3A1	100	82.390	ENSLBEG00000022974	sf3a1	99	82.968	Labrus_bergylta
ENSCAFG00000012559	SF3A1	100	86.951	ENSLACG00000003565	SF3A1	97	88.151	Latimeria_chalumnae
ENSCAFG00000012559	SF3A1	100	85.088	ENSLOCG00000008251	sf3a1	97	86.883	Lepisosteus_oculatus
ENSCAFG00000012559	SF3A1	100	98.865	ENSLAFG00000000448	SF3A1	100	98.865	Loxodonta_africana
ENSCAFG00000012559	SF3A1	98	62.038	ENSLAFG00000026032	-	98	62.166	Loxodonta_africana
ENSCAFG00000012559	SF3A1	100	98.739	ENSMFAG00000031979	SF3A1	100	98.739	Macaca_fascicularis
ENSCAFG00000012559	SF3A1	100	98.739	ENSMMUG00000005547	SF3A1	100	98.739	Macaca_mulatta
ENSCAFG00000012559	SF3A1	100	98.613	ENSMNEG00000037229	SF3A1	100	98.613	Macaca_nemestrina
ENSCAFG00000012559	SF3A1	100	98.865	ENSMLEG00000041908	SF3A1	100	98.865	Mandrillus_leucophaeus
ENSCAFG00000012559	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.899	Mastacembelus_armatus
ENSCAFG00000012559	SF3A1	100	84.355	ENSMZEG00005009633	sf3a1	99	85.403	Maylandia_zebra
ENSCAFG00000012559	SF3A1	95	94.180	ENSMGAG00000001330	SF3A1	99	93.282	Meleagris_gallopavo
ENSCAFG00000012559	SF3A1	92	94.945	ENSMAUG00000020317	Sf3a1	94	94.945	Mesocricetus_auratus
ENSCAFG00000012559	SF3A1	100	98.991	ENSMICG00000010038	SF3A1	100	98.991	Microcebus_murinus
ENSCAFG00000012559	SF3A1	100	98.487	ENSMOCG00000008438	Sf3a1	100	98.487	Microtus_ochrogaster
ENSCAFG00000012559	SF3A1	100	81.509	ENSMMOG00000015588	sf3a1	98	81.982	Mola_mola
ENSCAFG00000012559	SF3A1	100	97.730	ENSMODG00000009270	SF3A1	100	97.730	Monodelphis_domestica
ENSCAFG00000012559	SF3A1	100	84.257	ENSMALG00000000148	sf3a1	99	85.831	Monopterus_albus
ENSCAFG00000012559	SF3A1	100	97.982	MGP_CAROLIEiJ_G0016029	Sf3a1	100	97.982	Mus_caroli
ENSCAFG00000012559	SF3A1	100	97.982	ENSMUSG00000002129	Sf3a1	100	97.982	Mus_musculus
ENSCAFG00000012559	SF3A1	100	97.856	MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	Mus_pahari
ENSCAFG00000012559	SF3A1	100	97.982	MGP_SPRETEiJ_G0016870	Sf3a1	100	97.982	Mus_spretus
ENSCAFG00000012559	SF3A1	100	99.748	ENSMPUG00000013144	SF3A1	100	99.748	Mustela_putorius_furo
ENSCAFG00000012559	SF3A1	100	99.117	ENSMLUG00000002139	SF3A1	100	99.117	Myotis_lucifugus
ENSCAFG00000012559	SF3A1	100	98.739	ENSNGAG00000016977	Sf3a1	100	98.739	Nannospalax_galili
ENSCAFG00000012559	SF3A1	100	83.770	ENSNBRG00000016642	sf3a1	96	86.825	Neolamprologus_brichardi
ENSCAFG00000012559	SF3A1	100	98.865	ENSNLEG00000003686	SF3A1	100	98.865	Nomascus_leucogenys
ENSCAFG00000012559	SF3A1	96	87.895	ENSMEUG00000008741	SF3A1	100	87.895	Notamacropus_eugenii
ENSCAFG00000012559	SF3A1	100	98.361	ENSOPRG00000016636	SF3A1	100	98.361	Ochotona_princeps
ENSCAFG00000012559	SF3A1	100	98.613	ENSODEG00000002571	SF3A1	100	98.613	Octodon_degus
ENSCAFG00000012559	SF3A1	100	84.105	ENSONIG00000010848	sf3a1	99	84.783	Oreochromis_niloticus
ENSCAFG00000012559	SF3A1	100	98.991	ENSOCUG00000007633	SF3A1	100	98.991	Oryctolagus_cuniculus
ENSCAFG00000012559	SF3A1	96	81.759	ENSORLG00000013050	sf3a1	99	83.311	Oryzias_latipes
ENSCAFG00000012559	SF3A1	99	80.253	ENSORLG00020003236	sf3a1	94	83.445	Oryzias_latipes_hni
ENSCAFG00000012559	SF3A1	100	82.138	ENSORLG00015017411	sf3a1	99	83.742	Oryzias_latipes_hsok
ENSCAFG00000012559	SF3A1	100	82.767	ENSOMEG00000013362	sf3a1	99	83.613	Oryzias_melastigma
ENSCAFG00000012559	SF3A1	100	98.865	ENSOGAG00000012931	SF3A1	100	98.865	Otolemur_garnettii
ENSCAFG00000012559	SF3A1	100	97.604	ENSOARG00000006849	SF3A1	100	97.604	Ovis_aries
ENSCAFG00000012559	SF3A1	100	97.604	ENSPPAG00000041790	SF3A1	100	97.604	Pan_paniscus
ENSCAFG00000012559	SF3A1	100	99.748	ENSPPRG00000004391	SF3A1	100	99.748	Panthera_pardus
ENSCAFG00000012559	SF3A1	97	99.611	ENSPTIG00000000844	SF3A1	100	99.611	Panthera_tigris_altaica
ENSCAFG00000012559	SF3A1	100	98.613	ENSPTRG00000014240	SF3A1	100	98.613	Pan_troglodytes
ENSCAFG00000012559	SF3A1	100	98.865	ENSPANG00000020772	SF3A1	100	98.865	Papio_anubis
ENSCAFG00000012559	SF3A1	83	93.407	ENSPSIG00000012803	SF3A1	96	94.162	Pelodiscus_sinensis
ENSCAFG00000012559	SF3A1	96	84.031	ENSPMGG00000023096	sf3a1	100	84.031	Periophthalmus_magnuspinnatus
ENSCAFG00000012559	SF3A1	100	98.613	ENSPEMG00000009494	Sf3a1	100	98.613	Peromyscus_maniculatus_bairdii
ENSCAFG00000012559	SF3A1	69	78.040	ENSPMAG00000007139	-	90	77.757	Petromyzon_marinus
ENSCAFG00000012559	SF3A1	100	97.604	ENSPCIG00000022692	SF3A1	100	97.604	Phascolarctos_cinereus
ENSCAFG00000012559	SF3A1	100	75.251	ENSPFOG00000016768	sf3a1	93	78.912	Poecilia_formosa
ENSCAFG00000012559	SF3A1	100	83.543	ENSPLAG00000017268	sf3a1	97	85.098	Poecilia_latipinna
ENSCAFG00000012559	SF3A1	84	85.994	ENSPMEG00000019811	sf3a1	98	85.241	Poecilia_mexicana
ENSCAFG00000012559	SF3A1	100	83.668	ENSPREG00000010347	sf3a1	97	85.490	Poecilia_reticulata
ENSCAFG00000012559	SF3A1	100	98.865	ENSPPYG00000011707	SF3A1	100	98.865	Pongo_abelii
ENSCAFG00000012559	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSCAFG00000012559	SF3A1	100	98.991	ENSPCOG00000026630	SF3A1	100	98.991	Propithecus_coquereli
ENSCAFG00000012559	SF3A1	100	94.704	ENSPVAG00000017719	SF3A1	94	98.255	Pteropus_vampyrus
ENSCAFG00000012559	SF3A1	100	84.355	ENSPNYG00000018706	sf3a1	99	85.403	Pundamilia_nyererei
ENSCAFG00000012559	SF3A1	97	83.825	ENSPNAG00000003721	sf3a1	99	84.596	Pygocentrus_nattereri
ENSCAFG00000012559	SF3A1	100	97.982	ENSRNOG00000005218	Sf3a1	100	97.982	Rattus_norvegicus
ENSCAFG00000012559	SF3A1	100	98.739	ENSRBIG00000032167	SF3A1	100	98.739	Rhinopithecus_bieti
ENSCAFG00000012559	SF3A1	100	98.739	ENSRROG00000044908	SF3A1	100	98.739	Rhinopithecus_roxellana
ENSCAFG00000012559	SF3A1	97	95.090	ENSSBOG00000021960	SF3A1	100	99.261	Saimiri_boliviensis_boliviensis
ENSCAFG00000012559	SF3A1	97	95.213	ENSSHAG00000003666	SF3A1	98	95.213	Sarcophilus_harrisii
ENSCAFG00000012559	SF3A1	100	83.625	ENSSFOG00015004579	sf3a1	99	85.385	Scleropages_formosus
ENSCAFG00000012559	SF3A1	100	81.635	ENSSMAG00000004275	sf3a1	97	82.876	Scophthalmus_maximus
ENSCAFG00000012559	SF3A1	100	83.899	ENSSDUG00000022219	sf3a1	99	84.655	Seriola_dumerili
ENSCAFG00000012559	SF3A1	100	83.899	ENSSLDG00000012642	sf3a1	99	84.655	Seriola_lalandi_dorsalis
ENSCAFG00000012559	SF3A1	97	95.596	ENSSARG00000005960	SF3A1	100	95.596	Sorex_araneus
ENSCAFG00000012559	SF3A1	96	91.710	ENSSPUG00000018863	SF3A1	100	91.418	Sphenodon_punctatus
ENSCAFG00000012559	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	84.910	Stegastes_partitus
ENSCAFG00000012559	SF3A1	100	99.369	ENSSSCG00000010002	SF3A1	100	99.369	Sus_scrofa
ENSCAFG00000012559	SF3A1	95	94.063	ENSTGUG00000010547	SF3A1	99	93.385	Taeniopygia_guttata
ENSCAFG00000012559	SF3A1	100	81.258	ENSTRUG00000006118	sf3a1	97	82.092	Takifugu_rubripes
ENSCAFG00000012559	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSCAFG00000012559	SF3A1	100	91.551	ENSTBEG00000012771	SF3A1	100	91.551	Tupaia_belangeri
ENSCAFG00000012559	SF3A1	100	99.370	ENSTTRG00000001535	SF3A1	100	99.370	Tursiops_truncatus
ENSCAFG00000012559	SF3A1	99	98.729	ENSUAMG00000006750	SF3A1	99	98.729	Ursus_americanus
ENSCAFG00000012559	SF3A1	99	98.852	ENSUMAG00000016665	SF3A1	98	99.870	Ursus_maritimus
ENSCAFG00000012559	SF3A1	100	100.000	ENSVVUG00000003075	SF3A1	100	100.000	Vulpes_vulpes
ENSCAFG00000012559	SF3A1	100	86.073	ENSXETG00000016144	sf3a1	100	85.571	Xenopus_tropicalis
ENSCAFG00000012559	SF3A1	100	82.893	ENSXCOG00000015653	sf3a1	97	84.575	Xiphophorus_couchianus
ENSCAFG00000012559	SF3A1	100	83.019	ENSXMAG00000002753	sf3a1	97	84.706	Xiphophorus_maculatus