EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000013901 (Gene tree)
Gene ID: 486699
Gene Symbol: APOBEC1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 12334 bases
Position: chr27:37101330-37113663
Accession: 37995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000020485	APOBEC_N	PF08210.11	4.1e-28	1	1
ENSCAFP00000020485	APOBEC_C	PF05240.14	3.8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000022059	-	2625	XM_005637189	ENSCAFP00000020485	236 (aa)	XP_005637246	F1PUJ5

Gene Model

Click here to download ENSCAFG00000013901's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000013901's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000013901	APOBEC1	53	34.351	ENSCAFG00000013897	AICDA	56	34.351

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000013901	APOBEC1	100	77.966	ENSG00000111701	APOBEC1	100	77.966	Homo_sapiens
ENSCAFG00000013901	APOBEC1	99	87.124	ENSAMEG00000007098	APOBEC1	99	87.124	Ailuropoda_melanoleuca
ENSCAFG00000013901	APOBEC1	78	42.162	ENSACAG00000028578	-	98	42.162	Anolis_carolinensis
ENSCAFG00000013901	APOBEC1	100	77.119	ENSANAG00000027743	APOBEC1	95	77.119	Aotus_nancymaae
ENSCAFG00000013901	APOBEC1	100	74.153	ENSBTAG00000014683	APOBEC1	100	74.153	Bos_taurus
ENSCAFG00000013901	APOBEC1	94	77.828	ENSCJAG00000005398	APOBEC1	100	77.828	Callithrix_jacchus
ENSCAFG00000013901	APOBEC1	96	97.788	ENSCAFG00020003511	APOBEC1	95	97.788	Canis_lupus_dingo
ENSCAFG00000013901	APOBEC1	98	73.593	ENSCHIG00000011898	APOBEC1	96	73.593	Capra_hircus
ENSCAFG00000013901	APOBEC1	58	81.884	ENSTSYG00000029141	APOBEC1	98	81.884	Carlito_syrichta
ENSCAFG00000013901	APOBEC1	91	67.907	ENSCAPG00000015882	-	100	67.907	Cavia_aperea
ENSCAFG00000013901	APOBEC1	99	67.234	ENSCPOG00000033068	APOBEC1	99	67.234	Cavia_porcellus
ENSCAFG00000013901	APOBEC1	100	77.119	ENSCCAG00000022258	APOBEC1	100	77.119	Cebus_capucinus
ENSCAFG00000013901	APOBEC1	100	80.085	ENSCATG00000021613	APOBEC1	95	80.085	Cercocebus_atys
ENSCAFG00000013901	APOBEC1	97	69.432	ENSCLAG00000014645	APOBEC1	99	69.432	Chinchilla_lanigera
ENSCAFG00000013901	APOBEC1	81	79.474	ENSCSAG00000009817	APOBEC1	99	79.474	Chlorocebus_sabaeus
ENSCAFG00000013901	APOBEC1	78	47.059	ENSCPBG00000014331	-	77	47.059	Chrysemys_picta_bellii
ENSCAFG00000013901	APOBEC1	78	49.198	ENSCPBG00000014335	-	76	49.198	Chrysemys_picta_bellii
ENSCAFG00000013901	APOBEC1	77	44.920	ENSCPBG00000017398	-	82	44.920	Chrysemys_picta_bellii
ENSCAFG00000013901	APOBEC1	83	47.959	ENSCPBG00000014329	-	54	47.959	Chrysemys_picta_bellii
ENSCAFG00000013901	APOBEC1	83	47.475	ENSCPBG00000014328	-	86	47.475	Chrysemys_picta_bellii
ENSCAFG00000013901	APOBEC1	87	44.444	ENSCPBG00000014327	-	77	44.444	Chrysemys_picta_bellii
ENSCAFG00000013901	APOBEC1	97	80.000	ENSCANG00000038359	APOBEC1	100	80.000	Colobus_angolensis_palliatus
ENSCAFG00000013901	APOBEC1	97	69.432	ENSCGRG00001011130	Apobec1	100	69.432	Cricetulus_griseus_chok1gshd
ENSCAFG00000013901	APOBEC1	97	69.432	ENSCGRG00000008644	Apobec1	100	69.432	Cricetulus_griseus_crigri
ENSCAFG00000013901	APOBEC1	100	75.847	ENSDNOG00000010926	APOBEC1	100	75.847	Dasypus_novemcinctus
ENSCAFG00000013901	APOBEC1	90	67.757	ENSDORG00000023717	Apobec1	100	67.757	Dipodomys_ordii
ENSCAFG00000013901	APOBEC1	99	74.468	ENSETEG00000004867	APOBEC1	99	74.468	Echinops_telfairi
ENSCAFG00000013901	APOBEC1	99	80.258	ENSEASG00005015951	APOBEC1	98	80.258	Equus_asinus_asinus
ENSCAFG00000013901	APOBEC1	81	80.526	ENSECAG00000017163	APOBEC1	99	80.526	Equus_caballus
ENSCAFG00000013901	APOBEC1	86	53.922	ENSEEUG00000007530	-	97	53.922	Erinaceus_europaeus
ENSCAFG00000013901	APOBEC1	93	66.063	ENSEEUG00000009112	-	98	66.063	Erinaceus_europaeus
ENSCAFG00000013901	APOBEC1	100	84.746	ENSFCAG00000009350	APOBEC1	100	84.746	Felis_catus
ENSCAFG00000013901	APOBEC1	60	47.183	ENSFALG00000007257	-	70	47.183	Ficedula_albicollis
ENSCAFG00000013901	APOBEC1	88	57.971	ENSFDAG00000018470	APOBEC1	99	57.971	Fukomys_damarensis
ENSCAFG00000013901	APOBEC1	72	47.368	ENSGAGG00000006624	-	62	47.368	Gopherus_agassizii
ENSCAFG00000013901	APOBEC1	92	48.402	ENSGAGG00000011837	-	90	50.838	Gopherus_agassizii
ENSCAFG00000013901	APOBEC1	68	49.383	ENSGAGG00000004947	-	82	51.515	Gopherus_agassizii
ENSCAFG00000013901	APOBEC1	76	41.530	ENSGAGG00000021745	-	68	41.530	Gopherus_agassizii
ENSCAFG00000013901	APOBEC1	83	43.147	ENSGAGG00000021744	-	77	43.147	Gopherus_agassizii
ENSCAFG00000013901	APOBEC1	99	64.681	ENSHGLG00000001495	APOBEC1	99	64.681	Heterocephalus_glaber_female
ENSCAFG00000013901	APOBEC1	99	62.979	ENSHGLG00100002187	APOBEC1	99	62.979	Heterocephalus_glaber_male
ENSCAFG00000013901	APOBEC1	91	65.581	ENSSTOG00000021971	APOBEC1	100	82.653	Ictidomys_tridecemlineatus
ENSCAFG00000013901	APOBEC1	97	73.362	ENSJJAG00000022108	Apobec1	100	73.362	Jaculus_jaculus
ENSCAFG00000013901	APOBEC1	94	77.578	ENSLAFG00000030837	APOBEC1	100	77.578	Loxodonta_africana
ENSCAFG00000013901	APOBEC1	100	79.661	ENSMFAG00000000277	APOBEC1	100	79.661	Macaca_fascicularis
ENSCAFG00000013901	APOBEC1	100	79.237	ENSMNEG00000029670	APOBEC1	100	79.237	Macaca_nemestrina
ENSCAFG00000013901	APOBEC1	100	80.085	ENSMLEG00000036301	APOBEC1	100	80.085	Mandrillus_leucophaeus
ENSCAFG00000013901	APOBEC1	92	70.370	ENSMAUG00000022167	Apobec1	97	70.370	Mesocricetus_auratus
ENSCAFG00000013901	APOBEC1	100	78.390	ENSMICG00000043645	APOBEC1	100	78.390	Microcebus_murinus
ENSCAFG00000013901	APOBEC1	100	67.373	ENSMODG00000018004	APOBEC1	100	67.373	Monodelphis_domestica
ENSCAFG00000013901	APOBEC1	97	71.053	ENSMUSG00000040613	Apobec1	99	71.053	Mus_musculus
ENSCAFG00000013901	APOBEC1	97	68.860	MGP_PahariEiJ_G0022580	-	99	68.860	Mus_pahari
ENSCAFG00000013901	APOBEC1	97	71.053	MGP_SPRETEiJ_G0029857	Apobec1	99	71.053	Mus_spretus
ENSCAFG00000013901	APOBEC1	100	85.169	ENSMPUG00000017532	APOBEC1	100	85.169	Mustela_putorius_furo
ENSCAFG00000013901	APOBEC1	97	72.489	ENSNGAG00000022607	Apobec1	100	72.489	Nannospalax_galili
ENSCAFG00000013901	APOBEC1	100	78.814	ENSNLEG00000005342	APOBEC1	100	78.814	Nomascus_leucogenys
ENSCAFG00000013901	APOBEC1	100	65.678	ENSMEUG00000013406	APOBEC1	100	65.678	Notamacropus_eugenii
ENSCAFG00000013901	APOBEC1	77	62.983	ENSOPRG00000009508	-	100	62.983	Ochotona_princeps
ENSCAFG00000013901	APOBEC1	100	73.305	ENSOCUG00000025736	APOBEC1	88	73.305	Oryctolagus_cuniculus
ENSCAFG00000013901	APOBEC1	99	77.682	ENSOGAG00000026415	APOBEC1	99	77.682	Otolemur_garnettii
ENSCAFG00000013901	APOBEC1	100	73.305	ENSOARG00000002072	APOBEC1	99	73.305	Ovis_aries
ENSCAFG00000013901	APOBEC1	99	72.961	ENSPPAG00000027657	APOBEC1	99	72.961	Pan_paniscus
ENSCAFG00000013901	APOBEC1	100	85.169	ENSPPRG00000012182	APOBEC1	100	85.169	Panthera_pardus
ENSCAFG00000013901	APOBEC1	100	85.169	ENSPTIG00000020280	APOBEC1	100	85.169	Panthera_tigris_altaica
ENSCAFG00000013901	APOBEC1	100	78.390	ENSPTRG00000004614	APOBEC1	100	78.390	Pan_troglodytes
ENSCAFG00000013901	APOBEC1	100	80.508	ENSPANG00000021027	APOBEC1	100	80.508	Papio_anubis
ENSCAFG00000013901	APOBEC1	78	46.486	ENSPSIG00000012568	-	80	46.486	Pelodiscus_sinensis
ENSCAFG00000013901	APOBEC1	57	50.450	ENSPSIG00000012791	-	75	50.450	Pelodiscus_sinensis
ENSCAFG00000013901	APOBEC1	97	69.869	ENSPEMG00000023841	Apobec1	100	69.869	Peromyscus_maniculatus_bairdii
ENSCAFG00000013901	APOBEC1	100	69.492	ENSPCIG00000023973	APOBEC1	100	69.492	Phascolarctos_cinereus
ENSCAFG00000013901	APOBEC1	100	77.542	ENSPPYG00000004228	APOBEC1	95	77.542	Pongo_abelii
ENSCAFG00000013901	APOBEC1	79	78.075	ENSPCAG00000008733	APOBEC1	100	78.075	Procavia_capensis
ENSCAFG00000013901	APOBEC1	94	79.730	ENSPCOG00000013957	APOBEC1	98	79.730	Propithecus_coquereli
ENSCAFG00000013901	APOBEC1	100	63.559	ENSPVAG00000010709	APOBEC1	100	63.559	Pteropus_vampyrus
ENSCAFG00000013901	APOBEC1	97	68.860	ENSRNOG00000015411	Apobec1	99	68.860	Rattus_norvegicus
ENSCAFG00000013901	APOBEC1	100	80.085	ENSRBIG00000031161	APOBEC1	100	80.085	Rhinopithecus_bieti
ENSCAFG00000013901	APOBEC1	100	80.085	ENSRROG00000033576	APOBEC1	100	80.085	Rhinopithecus_roxellana
ENSCAFG00000013901	APOBEC1	73	79.191	ENSSBOG00000030587	APOBEC1	98	79.191	Saimiri_boliviensis_boliviensis
ENSCAFG00000013901	APOBEC1	96	69.163	ENSSHAG00000008925	APOBEC1	99	69.163	Sarcophilus_harrisii
ENSCAFG00000013901	APOBEC1	73	68.023	ENSSARG00000000032	-	100	68.023	Sorex_araneus
ENSCAFG00000013901	APOBEC1	56	71.970	ENSSARG00000011972	-	100	71.970	Sorex_araneus
ENSCAFG00000013901	APOBEC1	91	42.857	ENSSPUG00000009044	-	85	42.857	Sphenodon_punctatus
ENSCAFG00000013901	APOBEC1	100	79.661	ENSSSCG00000000668	APOBEC1	100	79.661	Sus_scrofa
ENSCAFG00000013901	APOBEC1	61	50.694	ENSTGUG00000013118	-	99	50.694	Taeniopygia_guttata
ENSCAFG00000013901	APOBEC1	94	75.113	ENSTBEG00000010043	APOBEC1	94	75.113	Tupaia_belangeri
ENSCAFG00000013901	APOBEC1	79	75.936	ENSTTRG00000014015	APOBEC1	100	75.936	Tursiops_truncatus
ENSCAFG00000013901	APOBEC1	99	86.266	ENSUAMG00000011636	APOBEC1	95	86.266	Ursus_americanus
ENSCAFG00000013901	APOBEC1	99	86.266	ENSUMAG00000016552	APOBEC1	95	86.266	Ursus_maritimus
ENSCAFG00000013901	APOBEC1	100	74.153	ENSVPAG00000001343	APOBEC1	100	74.153	Vicugna_pacos
ENSCAFG00000013901	APOBEC1	100	98.305	ENSVVUG00000010522	APOBEC1	100	98.305	Vulpes_vulpes