EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000014578 (Gene tree)
Gene ID: 476664
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 34830 bases
Position: chr20:44236897-44271726
Accession: 48150
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000021524	UPF1_Zn_bind	PF09416.10	6e-75	1	1
ENSCAFP00000021524	ResIII	PF04851.15	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000023180	-	4203	XM_005632680	ENSCAFP00000021524	1130 (aa)	XP_005632737	E2RL81

Gene Model

Click here to download ENSCAFG00000014578's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03013	RNA transport	KEGG
cfa03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000014578's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000014578	UPF1	100	99.646	ENSG00000005007	UPF1	100	99.646	Homo_sapiens
ENSCAFG00000014578	UPF1	100	91.784	ENSAPOG00000010916	-	100	91.784	Acanthochromis_polyacanthus
ENSCAFG00000014578	UPF1	100	90.485	ENSAPOG00000023773	upf1	100	90.576	Acanthochromis_polyacanthus
ENSCAFG00000014578	UPF1	100	98.676	ENSAMEG00000011474	UPF1	100	98.676	Ailuropoda_melanoleuca
ENSCAFG00000014578	UPF1	100	90.317	ENSACIG00000019949	upf1	100	90.661	Amphilophus_citrinellus
ENSCAFG00000014578	UPF1	92	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSCAFG00000014578	UPF1	100	91.784	ENSAOCG00000006352	-	100	91.784	Amphiprion_ocellaris
ENSCAFG00000014578	UPF1	100	90.000	ENSAOCG00000018519	upf1	100	90.576	Amphiprion_ocellaris
ENSCAFG00000014578	UPF1	100	91.784	ENSAPEG00000006292	-	100	91.784	Amphiprion_percula
ENSCAFG00000014578	UPF1	100	90.000	ENSAPEG00000016344	upf1	100	90.576	Amphiprion_percula
ENSCAFG00000014578	UPF1	100	91.873	ENSATEG00000016606	-	100	91.873	Anabas_testudineus
ENSCAFG00000014578	UPF1	100	89.199	ENSATEG00000017867	upf1	100	89.983	Anabas_testudineus
ENSCAFG00000014578	UPF1	93	98.292	ENSAPLG00000009175	UPF1	100	98.292	Anas_platyrhynchos
ENSCAFG00000014578	UPF1	95	97.026	ENSANAG00000024107	UPF1	97	97.026	Aotus_nancymaae
ENSCAFG00000014578	UPF1	100	90.053	ENSACLG00000007181	upf1	100	90.396	Astatotilapia_calliptera
ENSCAFG00000014578	UPF1	100	91.689	ENSACLG00000022630	-	100	91.600	Astatotilapia_calliptera
ENSCAFG00000014578	UPF1	100	92.403	ENSAMXG00000042187	upf1	100	92.845	Astyanax_mexicanus
ENSCAFG00000014578	UPF1	100	99.558	ENSBTAG00000020922	UPF1	100	99.558	Bos_taurus
ENSCAFG00000014578	UPF1	89	50.441	WBGene00004880	smg-2	99	47.649	Caenorhabditis_elegans
ENSCAFG00000014578	UPF1	100	99.646	ENSCJAG00000019627	UPF1	100	99.646	Callithrix_jacchus
ENSCAFG00000014578	UPF1	100	99.027	ENSCAFG00020012347	UPF1	100	99.027	Canis_lupus_dingo
ENSCAFG00000014578	UPF1	100	99.115	ENSCHIG00000011018	UPF1	100	99.115	Capra_hircus
ENSCAFG00000014578	UPF1	96	97.870	ENSTSYG00000008877	UPF1	99	97.870	Carlito_syrichta
ENSCAFG00000014578	UPF1	93	98.573	ENSCAPG00000005758	UPF1	95	98.573	Cavia_aperea
ENSCAFG00000014578	UPF1	100	96.293	ENSCPOG00000025463	UPF1	100	96.293	Cavia_porcellus
ENSCAFG00000014578	UPF1	100	99.027	ENSCCAG00000032175	UPF1	100	99.027	Cebus_capucinus
ENSCAFG00000014578	UPF1	93	99.620	ENSCATG00000040306	UPF1	98	99.620	Cercocebus_atys
ENSCAFG00000014578	UPF1	96	98.061	ENSCLAG00000004037	UPF1	99	99.619	Chinchilla_lanigera
ENSCAFG00000014578	UPF1	100	98.584	ENSCSAG00000005276	UPF1	100	98.584	Chlorocebus_sabaeus
ENSCAFG00000014578	UPF1	100	96.035	ENSCPBG00000012513	UPF1	100	96.035	Chrysemys_picta_bellii
ENSCAFG00000014578	UPF1	78	76.949	ENSCING00000021399	-	99	77.175	Ciona_intestinalis
ENSCAFG00000014578	UPF1	99	71.129	ENSCSAVG00000006533	-	99	71.216	Ciona_savignyi
ENSCAFG00000014578	UPF1	95	98.693	ENSCANG00000029819	UPF1	99	98.693	Colobus_angolensis_palliatus
ENSCAFG00000014578	UPF1	100	97.611	ENSCGRG00001021067	Upf1	100	97.611	Cricetulus_griseus_chok1gshd
ENSCAFG00000014578	UPF1	95	98.221	ENSCGRG00000013480	Upf1	99	98.221	Cricetulus_griseus_crigri
ENSCAFG00000014578	UPF1	100	85.336	ENSCSEG00000017239	upf1	100	85.424	Cynoglossus_semilaevis
ENSCAFG00000014578	UPF1	100	91.777	ENSCSEG00000016159	-	100	91.689	Cynoglossus_semilaevis
ENSCAFG00000014578	UPF1	100	91.519	ENSCVAG00000010561	upf1	100	91.431	Cyprinodon_variegatus
ENSCAFG00000014578	UPF1	100	92.226	ENSDARG00000016302	upf1	100	92.668	Danio_rerio
ENSCAFG00000014578	UPF1	95	95.705	ENSDORG00000009984	Upf1	96	95.705	Dipodomys_ordii
ENSCAFG00000014578	UPF1	85	70.072	FBgn0030354	Upf1	84	66.667	Drosophila_melanogaster
ENSCAFG00000014578	UPF1	56	83.466	ENSEBUG00000010069	upf1	96	83.625	Eptatretus_burgeri
ENSCAFG00000014578	UPF1	100	98.584	ENSEASG00005006549	UPF1	100	98.584	Equus_asinus_asinus
ENSCAFG00000014578	UPF1	100	98.584	ENSECAG00000010639	UPF1	100	98.584	Equus_caballus
ENSCAFG00000014578	UPF1	100	91.037	ENSELUG00000012916	-	100	90.957	Esox_lucius
ENSCAFG00000014578	UPF1	100	89.710	ENSELUG00000020917	upf1	100	89.974	Esox_lucius
ENSCAFG00000014578	UPF1	100	99.912	ENSFCAG00000009757	UPF1	100	99.912	Felis_catus
ENSCAFG00000014578	UPF1	96	95.872	ENSFALG00000009312	UPF1	99	95.872	Ficedula_albicollis
ENSCAFG00000014578	UPF1	97	96.975	ENSFDAG00000014816	UPF1	99	99.524	Fukomys_damarensis
ENSCAFG00000014578	UPF1	85	93.829	ENSFHEG00000016276	-	96	94.011	Fundulus_heteroclitus
ENSCAFG00000014578	UPF1	100	87.555	ENSFHEG00000006428	upf1	100	87.555	Fundulus_heteroclitus
ENSCAFG00000014578	UPF1	100	91.343	ENSGMOG00000007541	upf1	100	91.784	Gadus_morhua
ENSCAFG00000014578	UPF1	100	96.903	ENSGALG00000003220	UPF1	100	96.903	Gallus_gallus
ENSCAFG00000014578	UPF1	100	91.335	ENSGAFG00000004831	upf1	100	91.247	Gambusia_affinis
ENSCAFG00000014578	UPF1	62	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSCAFG00000014578	UPF1	100	96.375	ENSGAGG00000022217	UPF1	100	96.375	Gopherus_agassizii
ENSCAFG00000014578	UPF1	93	98.763	ENSGGOG00000002608	UPF1	99	98.763	Gorilla_gorilla
ENSCAFG00000014578	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCAFG00000014578	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCAFG00000014578	UPF1	100	99.115	ENSHGLG00000010900	UPF1	100	99.115	Heterocephalus_glaber_female
ENSCAFG00000014578	UPF1	96	95.753	ENSHGLG00100005904	UPF1	99	95.753	Heterocephalus_glaber_male
ENSCAFG00000014578	UPF1	100	90.805	ENSHCOG00000008918	upf1	100	93.014	Hippocampus_comes
ENSCAFG00000014578	UPF1	100	92.845	ENSIPUG00000005108	UPF1	100	93.198	Ictalurus_punctatus
ENSCAFG00000014578	UPF1	100	99.027	ENSSTOG00000009196	UPF1	100	99.027	Ictidomys_tridecemlineatus
ENSCAFG00000014578	UPF1	100	98.142	ENSJJAG00000023151	Upf1	100	98.142	Jaculus_jaculus
ENSCAFG00000014578	UPF1	100	91.784	ENSKMAG00000004962	upf1	100	91.696	Kryptolebias_marmoratus
ENSCAFG00000014578	UPF1	100	88.569	ENSLBEG00000014862	upf1	100	89.703	Labrus_bergylta
ENSCAFG00000014578	UPF1	100	91.696	ENSLBEG00000027848	-	100	91.696	Labrus_bergylta
ENSCAFG00000014578	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSCAFG00000014578	UPF1	100	94.164	ENSLOCG00000002072	upf1	100	94.164	Lepisosteus_oculatus
ENSCAFG00000014578	UPF1	100	98.761	ENSLAFG00000014963	UPF1	100	98.761	Loxodonta_africana
ENSCAFG00000014578	UPF1	100	99.646	ENSMFAG00000037748	UPF1	100	99.646	Macaca_fascicularis
ENSCAFG00000014578	UPF1	100	99.646	ENSMMUG00000023286	UPF1	100	99.646	Macaca_mulatta
ENSCAFG00000014578	UPF1	100	99.646	ENSMNEG00000000046	UPF1	100	99.646	Macaca_nemestrina
ENSCAFG00000014578	UPF1	93	99.810	ENSMLEG00000028404	UPF1	99	99.810	Mandrillus_leucophaeus
ENSCAFG00000014578	UPF1	100	88.937	ENSMAMG00000006229	upf1	100	89.895	Mastacembelus_armatus
ENSCAFG00000014578	UPF1	100	91.078	ENSMAMG00000006231	-	100	91.519	Mastacembelus_armatus
ENSCAFG00000014578	UPF1	100	91.689	ENSMZEG00005016386	-	100	91.600	Maylandia_zebra
ENSCAFG00000014578	UPF1	100	89.034	ENSMZEG00005003489	upf1	100	90.201	Maylandia_zebra
ENSCAFG00000014578	UPF1	93	97.909	ENSMGAG00000004745	UPF1	100	97.909	Meleagris_gallopavo
ENSCAFG00000014578	UPF1	95	97.495	ENSMAUG00000011398	Upf1	97	97.495	Mesocricetus_auratus
ENSCAFG00000014578	UPF1	100	98.407	ENSMICG00000001659	UPF1	100	98.407	Microcebus_murinus
ENSCAFG00000014578	UPF1	100	98.496	ENSMOCG00000005699	Upf1	100	98.496	Microtus_ochrogaster
ENSCAFG00000014578	UPF1	93	91.572	ENSMMOG00000007537	-	99	91.667	Mola_mola
ENSCAFG00000014578	UPF1	100	89.735	ENSMMOG00000007881	upf1	100	90.186	Mola_mola
ENSCAFG00000014578	UPF1	100	98.235	ENSMODG00000003689	UPF1	100	98.235	Monodelphis_domestica
ENSCAFG00000014578	UPF1	100	90.589	ENSMALG00000018100	-	100	90.589	Monopterus_albus
ENSCAFG00000014578	UPF1	100	90.000	ENSMALG00000000144	upf1	100	90.265	Monopterus_albus
ENSCAFG00000014578	UPF1	100	98.496	MGP_CAROLIEiJ_G0031142	Upf1	100	98.496	Mus_caroli
ENSCAFG00000014578	UPF1	100	98.496	ENSMUSG00000058301	Upf1	100	98.496	Mus_musculus
ENSCAFG00000014578	UPF1	100	98.496	MGP_PahariEiJ_G0021607	Upf1	100	98.496	Mus_pahari
ENSCAFG00000014578	UPF1	100	98.496	MGP_SPRETEiJ_G0032260	Upf1	100	98.496	Mus_spretus
ENSCAFG00000014578	UPF1	100	99.027	ENSMPUG00000015516	UPF1	100	99.027	Mustela_putorius_furo
ENSCAFG00000014578	UPF1	99	98.579	ENSMLUG00000012122	UPF1	99	98.579	Myotis_lucifugus
ENSCAFG00000014578	UPF1	100	98.496	ENSNGAG00000024107	Upf1	100	98.496	Nannospalax_galili
ENSCAFG00000014578	UPF1	100	89.415	ENSNBRG00000022069	-	100	92.981	Neolamprologus_brichardi
ENSCAFG00000014578	UPF1	100	88.380	ENSNBRG00000000670	upf1	100	88.722	Neolamprologus_brichardi
ENSCAFG00000014578	UPF1	93	94.006	ENSNLEG00000006062	UPF1	99	94.006	Nomascus_leucogenys
ENSCAFG00000014578	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSCAFG00000014578	UPF1	93	90.771	ENSOPRG00000014018	UPF1	99	90.771	Ochotona_princeps
ENSCAFG00000014578	UPF1	100	97.699	ENSODEG00000012426	UPF1	100	97.699	Octodon_degus
ENSCAFG00000014578	UPF1	100	89.295	ENSONIG00000010452	upf1	100	90.464	Oreochromis_niloticus
ENSCAFG00000014578	UPF1	100	91.777	ENSONIG00000012729	-	100	91.689	Oreochromis_niloticus
ENSCAFG00000014578	UPF1	100	97.438	ENSOANG00000004568	UPF1	100	97.438	Ornithorhynchus_anatinus
ENSCAFG00000014578	UPF1	100	91.696	ENSORLG00000008453	upf1	100	91.696	Oryzias_latipes
ENSCAFG00000014578	UPF1	100	91.615	ENSORLG00020014758	upf1	100	91.615	Oryzias_latipes_hni
ENSCAFG00000014578	UPF1	100	91.615	ENSORLG00015010165	upf1	100	91.615	Oryzias_latipes_hsok
ENSCAFG00000014578	UPF1	100	91.784	ENSOMEG00000003665	upf1	100	91.696	Oryzias_melastigma
ENSCAFG00000014578	UPF1	100	98.761	ENSOGAG00000012866	UPF1	100	98.761	Otolemur_garnettii
ENSCAFG00000014578	UPF1	96	97.608	ENSOARG00000010739	UPF1	100	97.608	Ovis_aries
ENSCAFG00000014578	UPF1	95	98.693	ENSPPAG00000043884	UPF1	97	98.693	Pan_paniscus
ENSCAFG00000014578	UPF1	100	99.912	ENSPPRG00000023470	UPF1	100	99.912	Panthera_pardus
ENSCAFG00000014578	UPF1	93	96.771	ENSPTIG00000010159	UPF1	99	96.771	Panthera_tigris_altaica
ENSCAFG00000014578	UPF1	100	99.646	ENSPTRG00000010721	UPF1	100	99.646	Pan_troglodytes
ENSCAFG00000014578	UPF1	100	99.646	ENSPANG00000008847	UPF1	100	99.646	Papio_anubis
ENSCAFG00000014578	UPF1	91	94.010	ENSPKIG00000006069	upf1	99	91.573	Paramormyrops_kingsleyae
ENSCAFG00000014578	UPF1	68	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSCAFG00000014578	UPF1	100	88.370	ENSPMGG00000017327	upf1	100	88.478	Periophthalmus_magnuspinnatus
ENSCAFG00000014578	UPF1	100	98.584	ENSPEMG00000001085	Upf1	100	98.584	Peromyscus_maniculatus_bairdii
ENSCAFG00000014578	UPF1	100	86.608	ENSPMAG00000001206	upf1	100	86.344	Petromyzon_marinus
ENSCAFG00000014578	UPF1	100	97.788	ENSPCIG00000006156	UPF1	100	97.788	Phascolarctos_cinereus
ENSCAFG00000014578	UPF1	100	91.424	ENSPLAG00000016232	-	100	91.335	Poecilia_latipinna
ENSCAFG00000014578	UPF1	100	88.519	ENSPLAG00000018155	-	100	88.431	Poecilia_latipinna
ENSCAFG00000014578	UPF1	100	89.056	ENSPMEG00000011443	-	100	88.967	Poecilia_mexicana
ENSCAFG00000014578	UPF1	100	91.512	ENSPMEG00000016319	-	100	91.424	Poecilia_mexicana
ENSCAFG00000014578	UPF1	100	91.247	ENSPREG00000011247	-	100	91.158	Poecilia_reticulata
ENSCAFG00000014578	UPF1	100	88.957	ENSPREG00000009940	upf1	100	88.957	Poecilia_reticulata
ENSCAFG00000014578	UPF1	100	94.690	ENSPPYG00000009752	UPF1	100	94.690	Pongo_abelii
ENSCAFG00000014578	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCAFG00000014578	UPF1	100	99.558	ENSPCOG00000023813	UPF1	100	99.558	Propithecus_coquereli
ENSCAFG00000014578	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCAFG00000014578	UPF1	100	91.689	ENSPNYG00000016731	-	100	91.600	Pundamilia_nyererei
ENSCAFG00000014578	UPF1	100	89.034	ENSPNYG00000003694	upf1	100	90.201	Pundamilia_nyererei
ENSCAFG00000014578	UPF1	100	92.403	ENSPNAG00000025614	upf1	100	92.845	Pygocentrus_nattereri
ENSCAFG00000014578	UPF1	100	98.496	ENSRNOG00000020134	Upf1	100	98.496	Rattus_norvegicus
ENSCAFG00000014578	UPF1	95	96.359	ENSRBIG00000013894	UPF1	98	98.485	Rhinopithecus_bieti
ENSCAFG00000014578	UPF1	95	98.693	ENSRROG00000040935	UPF1	99	98.693	Rhinopithecus_roxellana
ENSCAFG00000014578	UPF1	75	55.012	YMR080C	NAM7	82	57.108	Saccharomyces_cerevisiae
ENSCAFG00000014578	UPF1	96	97.514	ENSSBOG00000023632	UPF1	98	97.514	Saimiri_boliviensis_boliviensis
ENSCAFG00000014578	UPF1	93	99.050	ENSSHAG00000010499	UPF1	100	99.050	Sarcophilus_harrisii
ENSCAFG00000014578	UPF1	100	94.253	ENSSFOG00015021095	upf1	99	96.300	Scleropages_formosus
ENSCAFG00000014578	UPF1	100	88.220	ENSSMAG00000005055	upf1	100	89.015	Scophthalmus_maximus
ENSCAFG00000014578	UPF1	100	91.784	ENSSMAG00000021018	-	100	91.784	Scophthalmus_maximus
ENSCAFG00000014578	UPF1	100	92.049	ENSSDUG00000009629	-	100	92.049	Seriola_dumerili
ENSCAFG00000014578	UPF1	100	89.199	ENSSDUG00000013320	upf1	100	90.157	Seriola_dumerili
ENSCAFG00000014578	UPF1	100	92.049	ENSSLDG00000006878	-	100	92.049	Seriola_lalandi_dorsalis
ENSCAFG00000014578	UPF1	100	89.982	ENSSLDG00000020868	upf1	100	90.439	Seriola_lalandi_dorsalis
ENSCAFG00000014578	UPF1	100	96.283	ENSSPUG00000010538	UPF1	100	96.283	Sphenodon_punctatus
ENSCAFG00000014578	UPF1	100	88.506	ENSSPAG00000000003	upf1	100	88.448	Stegastes_partitus
ENSCAFG00000014578	UPF1	100	91.866	ENSSPAG00000011521	-	100	91.777	Stegastes_partitus
ENSCAFG00000014578	UPF1	100	99.469	ENSSSCG00000039301	UPF1	100	99.469	Sus_scrofa
ENSCAFG00000014578	UPF1	83	89.703	ENSTGUG00000001057	UPF1	100	95.575	Taeniopygia_guttata
ENSCAFG00000014578	UPF1	100	90.716	ENSTRUG00000005131	-	100	90.716	Takifugu_rubripes
ENSCAFG00000014578	UPF1	100	89.646	ENSTRUG00000000150	upf1	100	89.646	Takifugu_rubripes
ENSCAFG00000014578	UPF1	100	94.602	ENSTTRG00000011544	UPF1	100	93.805	Tursiops_truncatus
ENSCAFG00000014578	UPF1	100	98.938	ENSUAMG00000007093	UPF1	100	98.938	Ursus_americanus
ENSCAFG00000014578	UPF1	95	99.065	ENSUMAG00000006652	UPF1	99	99.065	Ursus_maritimus
ENSCAFG00000014578	UPF1	100	99.027	ENSVVUG00000007797	UPF1	100	99.027	Vulpes_vulpes
ENSCAFG00000014578	UPF1	100	82.643	ENSXETG00000013602	upf1	100	82.643	Xenopus_tropicalis
ENSCAFG00000014578	UPF1	97	88.848	ENSXCOG00000015275	-	96	88.757	Xiphophorus_couchianus
ENSCAFG00000014578	UPF1	92	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSCAFG00000014578	UPF1	100	89.125	ENSXMAG00000001703	-	100	89.036	Xiphophorus_maculatus
ENSCAFG00000014578	UPF1	100	91.335	ENSXMAG00000002540	-	100	91.247	Xiphophorus_maculatus