EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000014900 (Gene tree)
Gene ID: 609922
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 13031 bases
Position: chr20:44707460-44720490
Accession: 42844
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000021959	LSM	PF01423.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000023655	-	1023	XM_005632344	ENSCAFP00000021959	153 (aa)	-	F1PDH7

Gene Model

Click here to download ENSCAFG00000014900's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03018	RNA degradation	KEGG
cfa03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000014900's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000014900	LSM4	90	100.000	ENSG00000130520	LSM4	99	100.000	Homo_sapiens
ENSCAFG00000014900	LSM4	65	96.970	ENSAPOG00000005643	lsm4	58	98.864	Acanthochromis_polyacanthus
ENSCAFG00000014900	LSM4	90	100.000	ENSAMEG00000011162	LSM4	94	100.000	Ailuropoda_melanoleuca
ENSCAFG00000014900	LSM4	90	77.622	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSCAFG00000014900	LSM4	90	75.000	ENSAPEG00000006238	lsm4	59	98.864	Amphiprion_percula
ENSCAFG00000014900	LSM4	65	96.970	ENSATEG00000016559	lsm4	58	98.864	Anabas_testudineus
ENSCAFG00000014900	LSM4	90	100.000	ENSANAG00000034659	LSM4	99	100.000	Aotus_nancymaae
ENSCAFG00000014900	LSM4	72	83.871	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSCAFG00000014900	LSM4	90	81.159	ENSAMXG00000016932	lsm4	62	97.727	Astyanax_mexicanus
ENSCAFG00000014900	LSM4	90	100.000	ENSBTAG00000008578	LSM4	99	100.000	Bos_taurus
ENSCAFG00000014900	LSM4	54	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSCAFG00000014900	LSM4	90	100.000	ENSCJAG00000014171	LSM4	99	100.000	Callithrix_jacchus
ENSCAFG00000014900	LSM4	90	100.000	ENSCAFG00020012137	LSM4	99	100.000	Canis_lupus_dingo
ENSCAFG00000014900	LSM4	96	93.878	ENSCHIG00000010928	LSM4	97	93.878	Capra_hircus
ENSCAFG00000014900	LSM4	90	99.275	ENSTSYG00000030906	LSM4	99	99.275	Carlito_syrichta
ENSCAFG00000014900	LSM4	90	97.826	ENSCAPG00000014140	LSM4	99	97.826	Cavia_aperea
ENSCAFG00000014900	LSM4	90	97.826	ENSCPOG00000024117	LSM4	99	97.826	Cavia_porcellus
ENSCAFG00000014900	LSM4	90	100.000	ENSCCAG00000036308	LSM4	99	100.000	Cebus_capucinus
ENSCAFG00000014900	LSM4	90	100.000	ENSCATG00000029311	LSM4	99	100.000	Cercocebus_atys
ENSCAFG00000014900	LSM4	90	96.377	ENSCLAG00000010828	LSM4	99	96.377	Chinchilla_lanigera
ENSCAFG00000014900	LSM4	90	100.000	ENSCSAG00000005370	LSM4	99	100.000	Chlorocebus_sabaeus
ENSCAFG00000014900	LSM4	90	81.884	ENSCPBG00000012925	LSM4	64	98.864	Chrysemys_picta_bellii
ENSCAFG00000014900	LSM4	56	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSCAFG00000014900	LSM4	56	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSCAFG00000014900	LSM4	90	100.000	ENSCANG00000043686	LSM4	99	100.000	Colobus_angolensis_palliatus
ENSCAFG00000014900	LSM4	90	95.652	ENSCGRG00001014436	Lsm4	99	95.652	Cricetulus_griseus_chok1gshd
ENSCAFG00000014900	LSM4	90	95.620	ENSCGRG00000009398	Lsm4	99	95.620	Cricetulus_griseus_crigri
ENSCAFG00000014900	LSM4	63	95.876	ENSCSEG00000016127	lsm4	62	97.727	Cynoglossus_semilaevis
ENSCAFG00000014900	LSM4	80	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSCAFG00000014900	LSM4	90	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSCAFG00000014900	LSM4	88	78.723	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSCAFG00000014900	LSM4	90	97.826	ENSDORG00000024225	Lsm4	99	97.826	Dipodomys_ordii
ENSCAFG00000014900	LSM4	63	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSCAFG00000014900	LSM4	80	98.374	ENSETEG00000007762	-	99	98.374	Echinops_telfairi
ENSCAFG00000014900	LSM4	100	97.386	ENSECAG00000010141	LSM4	62	97.386	Equus_caballus
ENSCAFG00000014900	LSM4	86	84.328	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSCAFG00000014900	LSM4	90	100.000	ENSFCAG00000040580	LSM4	99	100.000	Felis_catus
ENSCAFG00000014900	LSM4	90	81.022	ENSFALG00000009478	LSM4	63	98.851	Ficedula_albicollis
ENSCAFG00000014900	LSM4	90	97.080	ENSFDAG00000010124	LSM4	99	97.080	Fukomys_damarensis
ENSCAFG00000014900	LSM4	63	96.875	ENSGMOG00000007729	lsm4	59	98.851	Gadus_morhua
ENSCAFG00000014900	LSM4	90	81.159	ENSGALG00000003385	LSM4	64	98.864	Gallus_gallus
ENSCAFG00000014900	LSM4	72	83.065	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSCAFG00000014900	LSM4	62	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSCAFG00000014900	LSM4	90	81.884	ENSGAGG00000017812	LSM4	64	98.864	Gopherus_agassizii
ENSCAFG00000014900	LSM4	90	100.000	ENSGGOG00000012914	-	99	100.000	Gorilla_gorilla
ENSCAFG00000014900	LSM4	90	97.101	ENSHGLG00000006568	LSM4	99	97.101	Heterocephalus_glaber_female
ENSCAFG00000014900	LSM4	61	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSCAFG00000014900	LSM4	90	77.372	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSCAFG00000014900	LSM4	90	81.159	ENSIPUG00000005368	Lsm4	62	98.864	Ictalurus_punctatus
ENSCAFG00000014900	LSM4	90	100.000	ENSSTOG00000016494	LSM4	99	100.000	Ictidomys_tridecemlineatus
ENSCAFG00000014900	LSM4	90	97.101	ENSJJAG00000017420	Lsm4	99	97.101	Jaculus_jaculus
ENSCAFG00000014900	LSM4	56	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSCAFG00000014900	LSM4	65	96.970	ENSLBEG00000027930	lsm4	59	98.864	Labrus_bergylta
ENSCAFG00000014900	LSM4	90	83.212	ENSLACG00000015861	LSM4	98	83.212	Latimeria_chalumnae
ENSCAFG00000014900	LSM4	84	83.721	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSCAFG00000014900	LSM4	90	98.540	ENSLAFG00000017459	LSM4	99	98.540	Loxodonta_africana
ENSCAFG00000014900	LSM4	90	100.000	ENSMFAG00000031194	LSM4	99	100.000	Macaca_fascicularis
ENSCAFG00000014900	LSM4	90	100.000	ENSMMUG00000004405	LSM4	99	100.000	Macaca_mulatta
ENSCAFG00000014900	LSM4	90	100.000	ENSMNEG00000042899	LSM4	99	100.000	Macaca_nemestrina
ENSCAFG00000014900	LSM4	90	100.000	ENSMLEG00000027948	LSM4	99	100.000	Mandrillus_leucophaeus
ENSCAFG00000014900	LSM4	90	79.710	ENSMAMG00000006190	lsm4	62	98.864	Mastacembelus_armatus
ENSCAFG00000014900	LSM4	72	83.871	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSCAFG00000014900	LSM4	90	82.609	ENSMGAG00000004976	LSM4	99	89.781	Meleagris_gallopavo
ENSCAFG00000014900	LSM4	90	99.275	ENSMICG00000000222	LSM4	99	99.275	Microcebus_murinus
ENSCAFG00000014900	LSM4	90	96.377	ENSMOCG00000020861	Lsm4	99	96.377	Microtus_ochrogaster
ENSCAFG00000014900	LSM4	80	95.935	ENSMODG00000015044	-	99	95.935	Monodelphis_domestica
ENSCAFG00000014900	LSM4	90	77.143	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSCAFG00000014900	LSM4	90	96.377	MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	Mus_caroli
ENSCAFG00000014900	LSM4	90	96.377	ENSMUSG00000031848	Lsm4	99	96.377	Mus_musculus
ENSCAFG00000014900	LSM4	90	96.377	MGP_PahariEiJ_G0021623	Lsm4	99	96.377	Mus_pahari
ENSCAFG00000014900	LSM4	90	96.377	MGP_SPRETEiJ_G0032276	Lsm4	99	96.377	Mus_spretus
ENSCAFG00000014900	LSM4	90	100.000	ENSMPUG00000015589	LSM4	99	100.000	Mustela_putorius_furo
ENSCAFG00000014900	LSM4	90	100.000	ENSMLUG00000004010	LSM4	99	100.000	Myotis_lucifugus
ENSCAFG00000014900	LSM4	90	96.377	ENSNGAG00000008644	Lsm4	99	96.377	Nannospalax_galili
ENSCAFG00000014900	LSM4	64	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSCAFG00000014900	LSM4	80	92.683	ENSMEUG00000013229	LSM4	99	92.683	Notamacropus_eugenii
ENSCAFG00000014900	LSM4	80	93.496	ENSOPRG00000005575	LSM4	99	82.927	Ochotona_princeps
ENSCAFG00000014900	LSM4	90	97.101	ENSODEG00000020549	-	99	97.101	Octodon_degus
ENSCAFG00000014900	LSM4	90	73.188	ENSODEG00000011712	-	99	73.188	Octodon_degus
ENSCAFG00000014900	LSM4	90	86.957	ENSODEG00000004519	-	99	74.638	Octodon_degus
ENSCAFG00000014900	LSM4	72	83.871	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSCAFG00000014900	LSM4	57	93.407	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSCAFG00000014900	LSM4	90	85.106	ENSORLG00000008391	lsm4	61	97.727	Oryzias_latipes
ENSCAFG00000014900	LSM4	90	72.848	ENSORLG00020014829	lsm4	61	97.727	Oryzias_latipes_hni
ENSCAFG00000014900	LSM4	90	85.106	ENSORLG00015010205	lsm4	61	97.727	Oryzias_latipes_hsok
ENSCAFG00000014900	LSM4	90	83.333	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSCAFG00000014900	LSM4	65	98.990	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSCAFG00000014900	LSM4	78	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSCAFG00000014900	LSM4	90	100.000	ENSPPAG00000044045	-	99	100.000	Pan_paniscus
ENSCAFG00000014900	LSM4	90	100.000	ENSPPRG00000018264	LSM4	99	100.000	Panthera_pardus
ENSCAFG00000014900	LSM4	90	100.000	ENSPTIG00000006306	LSM4	99	100.000	Panthera_tigris_altaica
ENSCAFG00000014900	LSM4	90	100.000	ENSPTRG00000031470	LSM4	99	100.000	Pan_troglodytes
ENSCAFG00000014900	LSM4	90	100.000	ENSPANG00000014399	LSM4	99	100.000	Papio_anubis
ENSCAFG00000014900	LSM4	90	81.752	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSCAFG00000014900	LSM4	90	81.022	ENSPSIG00000012358	LSM4	99	89.781	Pelodiscus_sinensis
ENSCAFG00000014900	LSM4	90	96.377	ENSPEMG00000001358	Lsm4	99	96.377	Peromyscus_maniculatus_bairdii
ENSCAFG00000014900	LSM4	90	80.000	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSCAFG00000014900	LSM4	89	78.417	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSCAFG00000014900	LSM4	90	100.000	ENSPPYG00000009736	LSM4	99	100.000	Pongo_abelii
ENSCAFG00000014900	LSM4	80	98.374	ENSPCAG00000008513	LSM4	99	98.374	Procavia_capensis
ENSCAFG00000014900	LSM4	90	99.275	ENSPCOG00000019837	LSM4	99	99.275	Propithecus_coquereli
ENSCAFG00000014900	LSM4	90	100.000	ENSPVAG00000015383	LSM4	99	100.000	Pteropus_vampyrus
ENSCAFG00000014900	LSM4	72	83.871	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSCAFG00000014900	LSM4	87	83.582	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSCAFG00000014900	LSM4	90	96.377	ENSRNOG00000019572	Lsm4	99	96.377	Rattus_norvegicus
ENSCAFG00000014900	LSM4	90	100.000	ENSRBIG00000024717	LSM4	99	100.000	Rhinopithecus_bieti
ENSCAFG00000014900	LSM4	90	100.000	ENSRROG00000045706	LSM4	99	100.000	Rhinopithecus_roxellana
ENSCAFG00000014900	LSM4	54	40.860	YER112W	LSM4	50	40.860	Saccharomyces_cerevisiae
ENSCAFG00000014900	LSM4	81	100.000	ENSSBOG00000022455	LSM4	99	100.000	Saimiri_boliviensis_boliviensis
ENSCAFG00000014900	LSM4	90	96.377	ENSSHAG00000011559	LSM4	99	96.377	Sarcophilus_harrisii
ENSCAFG00000014900	LSM4	90	80.292	ENSSFOG00015021067	lsm4	62	98.864	Scleropages_formosus
ENSCAFG00000014900	LSM4	90	71.831	ENSSMAG00000021020	lsm4	95	71.831	Scophthalmus_maximus
ENSCAFG00000014900	LSM4	65	96.970	ENSSDUG00000009588	lsm4	53	98.864	Seriola_dumerili
ENSCAFG00000014900	LSM4	65	96.970	ENSSLDG00000006827	lsm4	52	98.864	Seriola_lalandi_dorsalis
ENSCAFG00000014900	LSM4	57	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSCAFG00000014900	LSM4	65	96.970	ENSSPAG00000011615	lsm4	58	98.864	Stegastes_partitus
ENSCAFG00000014900	LSM4	90	100.000	ENSSSCG00000034314	LSM4	99	100.000	Sus_scrofa
ENSCAFG00000014900	LSM4	72	81.452	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSCAFG00000014900	LSM4	90	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSCAFG00000014900	LSM4	90	100.000	ENSUAMG00000000665	LSM4	99	100.000	Ursus_americanus
ENSCAFG00000014900	LSM4	90	100.000	ENSUMAG00000009013	LSM4	99	100.000	Ursus_maritimus
ENSCAFG00000014900	LSM4	90	100.000	ENSVVUG00000008136	LSM4	70	100.000	Vulpes_vulpes
ENSCAFG00000014900	LSM4	90	92.029	ENSXETG00000024933	lsm4	99	89.130	Xenopus_tropicalis