EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00000015036 (Gene tree)
Gene ID: 489859
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 15582 bases
Position: chr6:10136254-10151835
Accession: 39576
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000040027	zf-CCCH	PF00642.24	2.9e-20	1	2
ENSCAFP00000040027	zf-CCCH	PF00642.24	2.9e-20	2	2
ENSCAFP00000022175	zf-CCCH	PF00642.24	1.7e-17	1	1
ENSCAFP00000022180	zf-CCCH	PF00642.24	1.2e-15	1	2
ENSCAFP00000022180	zf-CCCH	PF00642.24	1.2e-15	2	2
ENSCAFP00000022180	zf-CCHC	PF00098.23	2.7e-06	1	1
ENSCAFP00000040027	zf-CCHC	PF00098.23	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000023887	-	492	-	ENSCAFP00000022175	164 (aa)	-	E2RBM0
ENSCAFT00000023892	-	639	-	ENSCAFP00000022180	212 (aa)	-	E2RBK7
ENSCAFT00000043832	-	3078	XM_005621089	ENSCAFP00000040027	269 (aa)	XP_005621146	J9P398

Gene Model

Click here to download ENSCAFG00000015036's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03015	mRNA surveillance pathway	KEGG
cfa05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000015036's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000015036	CPSF4	100	98.885	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSCAFG00000015036	CPSF4	67	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSCAFG00000015036	CPSF4	100	99.628	ENSAMEG00000006252	CPSF4	100	99.628	Ailuropoda_melanoleuca
ENSCAFG00000015036	CPSF4	99	88.024	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSCAFG00000015036	CPSF4	99	86.826	ENSAOCG00000019616	cpsf4	100	85.185	Amphiprion_ocellaris
ENSCAFG00000015036	CPSF4	99	86.826	ENSAPEG00000011679	cpsf4	100	85.185	Amphiprion_percula
ENSCAFG00000015036	CPSF4	99	87.425	ENSATEG00000007010	cpsf4	100	84.559	Anabas_testudineus
ENSCAFG00000015036	CPSF4	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSCAFG00000015036	CPSF4	100	98.885	ENSANAG00000021360	CPSF4	100	98.885	Aotus_nancymaae
ENSCAFG00000015036	CPSF4	99	86.826	ENSACLG00000010374	cpsf4	100	83.704	Astatotilapia_calliptera
ENSCAFG00000015036	CPSF4	100	85.377	ENSAMXG00000031647	cpsf4	100	85.978	Astyanax_mexicanus
ENSCAFG00000015036	CPSF4	100	89.219	ENSBTAG00000002090	CPSF4	100	89.219	Bos_taurus
ENSCAFG00000015036	CPSF4	100	98.885	ENSCJAG00000015826	CPSF4	100	98.885	Callithrix_jacchus
ENSCAFG00000015036	CPSF4	100	93.680	ENSCAFG00020014462	CPSF4	100	93.680	Canis_lupus_dingo
ENSCAFG00000015036	CPSF4	100	98.885	ENSCHIG00000014313	CPSF4	100	98.885	Capra_hircus
ENSCAFG00000015036	CPSF4	100	98.113	ENSTSYG00000005712	-	100	98.113	Carlito_syrichta
ENSCAFG00000015036	CPSF4	85	90.055	ENSTSYG00000008195	-	100	90.055	Carlito_syrichta
ENSCAFG00000015036	CPSF4	100	88.732	ENSTSYG00000014604	-	100	88.732	Carlito_syrichta
ENSCAFG00000015036	CPSF4	81	99.541	ENSCAPG00000013881	CPSF4	87	99.541	Cavia_aperea
ENSCAFG00000015036	CPSF4	100	99.057	ENSCPOG00000001783	CPSF4	100	99.057	Cavia_porcellus
ENSCAFG00000015036	CPSF4	100	98.885	ENSCCAG00000028291	CPSF4	100	98.885	Cebus_capucinus
ENSCAFG00000015036	CPSF4	100	98.885	ENSCATG00000038440	CPSF4	100	98.885	Cercocebus_atys
ENSCAFG00000015036	CPSF4	100	99.257	ENSCLAG00000007050	CPSF4	100	99.257	Chinchilla_lanigera
ENSCAFG00000015036	CPSF4	100	98.885	ENSCSAG00000017795	CPSF4	100	98.885	Chlorocebus_sabaeus
ENSCAFG00000015036	CPSF4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSCAFG00000015036	CPSF4	100	75.449	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSCAFG00000015036	CPSF4	100	66.864	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSCAFG00000015036	CPSF4	99	67.857	ENSCSAVG00000011469	-	97	53.025	Ciona_savignyi
ENSCAFG00000015036	CPSF4	100	98.885	ENSCANG00000019384	CPSF4	100	98.885	Colobus_angolensis_palliatus
ENSCAFG00000015036	CPSF4	100	99.057	ENSCGRG00001024184	Cpsf4	100	99.057	Cricetulus_griseus_chok1gshd
ENSCAFG00000015036	CPSF4	100	99.628	ENSCGRG00000013892	Cpsf4	100	99.628	Cricetulus_griseus_crigri
ENSCAFG00000015036	CPSF4	99	86.228	ENSCSEG00000019055	cpsf4	100	84.434	Cynoglossus_semilaevis
ENSCAFG00000015036	CPSF4	99	87.273	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSCAFG00000015036	CPSF4	99	88.024	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSCAFG00000015036	CPSF4	100	99.257	ENSDNOG00000006344	CPSF4	100	99.257	Dasypus_novemcinctus
ENSCAFG00000015036	CPSF4	81	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSCAFG00000015036	CPSF4	100	65.089	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSCAFG00000015036	CPSF4	99	89.697	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSCAFG00000015036	CPSF4	100	76.190	ENSEBUG00000012552	cpsf4	98	65.543	Eptatretus_burgeri
ENSCAFG00000015036	CPSF4	100	90.335	ENSEASG00005002487	CPSF4	100	90.335	Equus_asinus_asinus
ENSCAFG00000015036	CPSF4	100	99.628	ENSECAG00000007525	CPSF4	100	99.628	Equus_caballus
ENSCAFG00000015036	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSCAFG00000015036	CPSF4	99	86.826	ENSELUG00000011481	cpsf4	100	80.657	Esox_lucius
ENSCAFG00000015036	CPSF4	100	99.628	ENSFCAG00000015070	CPSF4	100	99.628	Felis_catus
ENSCAFG00000015036	CPSF4	99	60.000	ENSFALG00000012906	-	100	60.000	Ficedula_albicollis
ENSCAFG00000015036	CPSF4	100	85.874	ENSFALG00000013799	CPSF4	100	84.387	Ficedula_albicollis
ENSCAFG00000015036	CPSF4	90	98.765	ENSFDAG00000014092	CPSF4	100	98.765	Fukomys_damarensis
ENSCAFG00000015036	CPSF4	99	87.879	ENSFHEG00000010880	cpsf4	100	83.333	Fundulus_heteroclitus
ENSCAFG00000015036	CPSF4	99	85.207	ENSGMOG00000002330	cpsf4	100	76.384	Gadus_morhua
ENSCAFG00000015036	CPSF4	99	53.659	ENSGALG00000004441	-	98	31.739	Gallus_gallus
ENSCAFG00000015036	CPSF4	100	86.617	ENSGALG00000004714	CPSF4	100	84.758	Gallus_gallus
ENSCAFG00000015036	CPSF4	99	86.667	ENSGAFG00000010580	cpsf4	100	82.963	Gambusia_affinis
ENSCAFG00000015036	CPSF4	99	83.432	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSCAFG00000015036	CPSF4	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSCAFG00000015036	CPSF4	99	75.301	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSCAFG00000015036	CPSF4	100	98.885	ENSGGOG00000015131	CPSF4	100	98.885	Gorilla_gorilla
ENSCAFG00000015036	CPSF4	99	86.826	ENSHBUG00000013699	cpsf4	100	83.704	Haplochromis_burtoni
ENSCAFG00000015036	CPSF4	100	98.585	ENSHGLG00000017150	CPSF4	100	98.585	Heterocephalus_glaber_female
ENSCAFG00000015036	CPSF4	87	95.763	ENSHGLG00100009215	-	100	96.045	Heterocephalus_glaber_male
ENSCAFG00000015036	CPSF4	100	71.698	ENSHGLG00100017302	-	100	71.698	Heterocephalus_glaber_male
ENSCAFG00000015036	CPSF4	99	86.826	ENSHCOG00000004397	cpsf4	100	81.111	Hippocampus_comes
ENSCAFG00000015036	CPSF4	99	87.425	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSCAFG00000015036	CPSF4	100	99.628	ENSSTOG00000001688	CPSF4	100	99.628	Ictidomys_tridecemlineatus
ENSCAFG00000015036	CPSF4	100	99.257	ENSJJAG00000019426	Cpsf4	100	99.257	Jaculus_jaculus
ENSCAFG00000015036	CPSF4	99	85.455	ENSKMAG00000015642	cpsf4	100	82.222	Kryptolebias_marmoratus
ENSCAFG00000015036	CPSF4	100	88.889	ENSLACG00000010938	CPSF4	100	88.889	Latimeria_chalumnae
ENSCAFG00000015036	CPSF4	99	73.373	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSCAFG00000015036	CPSF4	100	89.591	ENSLOCG00000004814	cpsf4	100	89.591	Lepisosteus_oculatus
ENSCAFG00000015036	CPSF4	100	99.257	ENSLAFG00000000159	CPSF4	100	99.257	Loxodonta_africana
ENSCAFG00000015036	CPSF4	100	98.885	ENSMFAG00000001462	CPSF4	100	98.885	Macaca_fascicularis
ENSCAFG00000015036	CPSF4	100	98.885	ENSMMUG00000019191	CPSF4	100	98.885	Macaca_mulatta
ENSCAFG00000015036	CPSF4	100	98.885	ENSMNEG00000032306	CPSF4	100	98.885	Macaca_nemestrina
ENSCAFG00000015036	CPSF4	100	98.885	ENSMLEG00000034721	CPSF4	100	98.885	Mandrillus_leucophaeus
ENSCAFG00000015036	CPSF4	99	87.425	ENSMAMG00000006244	cpsf4	100	84.074	Mastacembelus_armatus
ENSCAFG00000015036	CPSF4	99	86.826	ENSMZEG00005007515	cpsf4	100	83.704	Maylandia_zebra
ENSCAFG00000015036	CPSF4	87	85.106	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSCAFG00000015036	CPSF4	100	99.628	ENSMAUG00000021253	Cpsf4	100	99.628	Mesocricetus_auratus
ENSCAFG00000015036	CPSF4	100	98.885	ENSMICG00000017429	CPSF4	100	98.885	Microcebus_murinus
ENSCAFG00000015036	CPSF4	100	99.628	ENSMOCG00000014901	Cpsf4	100	99.628	Microtus_ochrogaster
ENSCAFG00000015036	CPSF4	100	87.195	ENSMMOG00000001813	cpsf4	100	84.434	Mola_mola
ENSCAFG00000015036	CPSF4	100	97.026	ENSMODG00000001367	CPSF4	100	97.026	Monodelphis_domestica
ENSCAFG00000015036	CPSF4	99	86.503	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSCAFG00000015036	CPSF4	100	99.628	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.628	Mus_caroli
ENSCAFG00000015036	CPSF4	100	99.628	ENSMUSG00000029625	Cpsf4	100	99.628	Mus_musculus
ENSCAFG00000015036	CPSF4	100	99.628	MGP_PahariEiJ_G0024581	Cpsf4	100	99.628	Mus_pahari
ENSCAFG00000015036	CPSF4	100	99.257	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.257	Mus_spretus
ENSCAFG00000015036	CPSF4	100	99.628	ENSMPUG00000016508	CPSF4	100	99.628	Mustela_putorius_furo
ENSCAFG00000015036	CPSF4	87	87.660	ENSMLUG00000010980	CPSF4	100	87.660	Myotis_lucifugus
ENSCAFG00000015036	CPSF4	100	99.257	ENSNGAG00000001567	Cpsf4	100	99.257	Nannospalax_galili
ENSCAFG00000015036	CPSF4	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSCAFG00000015036	CPSF4	100	98.113	ENSNLEG00000011074	CPSF4	100	98.113	Nomascus_leucogenys
ENSCAFG00000015036	CPSF4	100	97.026	ENSMEUG00000006955	CPSF4	100	97.026	Notamacropus_eugenii
ENSCAFG00000015036	CPSF4	100	98.885	ENSOPRG00000013663	CPSF4	100	98.885	Ochotona_princeps
ENSCAFG00000015036	CPSF4	100	81.707	ENSODEG00000018283	-	89	78.774	Octodon_degus
ENSCAFG00000015036	CPSF4	100	99.628	ENSODEG00000011181	-	100	99.628	Octodon_degus
ENSCAFG00000015036	CPSF4	100	74.725	ENSODEG00000009779	-	100	74.725	Octodon_degus
ENSCAFG00000015036	CPSF4	99	86.826	ENSONIG00000008495	cpsf4	100	83.704	Oreochromis_niloticus
ENSCAFG00000015036	CPSF4	99	70.552	ENSOANG00000009568	-	100	53.597	Ornithorhynchus_anatinus
ENSCAFG00000015036	CPSF4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSCAFG00000015036	CPSF4	100	98.885	ENSOCUG00000002437	CPSF4	70	98.885	Oryctolagus_cuniculus
ENSCAFG00000015036	CPSF4	99	87.879	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSCAFG00000015036	CPSF4	99	87.879	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSCAFG00000015036	CPSF4	99	87.273	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSCAFG00000015036	CPSF4	99	86.667	ENSOMEG00000005176	cpsf4	100	83.019	Oryzias_melastigma
ENSCAFG00000015036	CPSF4	100	99.257	ENSOGAG00000010884	CPSF4	100	99.257	Otolemur_garnettii
ENSCAFG00000015036	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSCAFG00000015036	CPSF4	100	98.513	ENSPPAG00000043355	CPSF4	100	98.513	Pan_paniscus
ENSCAFG00000015036	CPSF4	100	99.628	ENSPPRG00000003134	CPSF4	100	99.628	Panthera_pardus
ENSCAFG00000015036	CPSF4	90	99.174	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSCAFG00000015036	CPSF4	100	98.513	ENSPTRG00000019453	CPSF4	100	98.513	Pan_troglodytes
ENSCAFG00000015036	CPSF4	100	98.885	ENSPANG00000023123	CPSF4	100	98.885	Papio_anubis
ENSCAFG00000015036	CPSF4	99	86.228	ENSPKIG00000014278	cpsf4	100	83.942	Paramormyrops_kingsleyae
ENSCAFG00000015036	CPSF4	70	84.211	ENSPSIG00000018198	-	100	58.257	Pelodiscus_sinensis
ENSCAFG00000015036	CPSF4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSCAFG00000015036	CPSF4	99	87.117	ENSPMGG00000017735	cpsf4	100	71.587	Periophthalmus_magnuspinnatus
ENSCAFG00000015036	CPSF4	100	99.628	ENSPEMG00000004508	Cpsf4	100	99.628	Peromyscus_maniculatus_bairdii
ENSCAFG00000015036	CPSF4	100	97.026	ENSPCIG00000024776	CPSF4	100	97.026	Phascolarctos_cinereus
ENSCAFG00000015036	CPSF4	99	86.667	ENSPFOG00000014912	cpsf4	100	82.963	Poecilia_formosa
ENSCAFG00000015036	CPSF4	100	86.747	ENSPLAG00000009599	cpsf4	100	75.465	Poecilia_latipinna
ENSCAFG00000015036	CPSF4	99	86.667	ENSPMEG00000009790	cpsf4	100	82.963	Poecilia_mexicana
ENSCAFG00000015036	CPSF4	99	86.667	ENSPREG00000018166	cpsf4	100	79.259	Poecilia_reticulata
ENSCAFG00000015036	CPSF4	87	97.863	ENSPPYG00000017378	CPSF4	100	97.863	Pongo_abelii
ENSCAFG00000015036	CPSF4	100	98.513	ENSPCAG00000001892	CPSF4	100	98.513	Procavia_capensis
ENSCAFG00000015036	CPSF4	100	99.257	ENSPCOG00000012771	CPSF4	100	99.257	Propithecus_coquereli
ENSCAFG00000015036	CPSF4	100	92.937	ENSPVAG00000007531	CPSF4	100	92.937	Pteropus_vampyrus
ENSCAFG00000015036	CPSF4	99	86.826	ENSPNYG00000018559	cpsf4	100	83.704	Pundamilia_nyererei
ENSCAFG00000015036	CPSF4	99	88.623	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSCAFG00000015036	CPSF4	100	99.057	ENSRNOG00000000985	Cpsf4	100	99.057	Rattus_norvegicus
ENSCAFG00000015036	CPSF4	87	98.718	ENSRBIG00000033886	CPSF4	100	98.718	Rhinopithecus_bieti
ENSCAFG00000015036	CPSF4	100	98.113	ENSRROG00000040431	CPSF4	100	98.113	Rhinopithecus_roxellana
ENSCAFG00000015036	CPSF4	100	98.885	ENSSBOG00000020493	CPSF4	100	98.885	Saimiri_boliviensis_boliviensis
ENSCAFG00000015036	CPSF4	100	97.026	ENSSHAG00000011533	CPSF4	100	97.026	Sarcophilus_harrisii
ENSCAFG00000015036	CPSF4	99	86.905	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSCAFG00000015036	CPSF4	99	86.228	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSCAFG00000015036	CPSF4	99	86.826	ENSSDUG00000018887	cpsf4	100	83.704	Seriola_dumerili
ENSCAFG00000015036	CPSF4	99	86.826	ENSSLDG00000019078	cpsf4	100	83.704	Seriola_lalandi_dorsalis
ENSCAFG00000015036	CPSF4	87	99.145	ENSSARG00000012416	CPSF4	100	99.145	Sorex_araneus
ENSCAFG00000015036	CPSF4	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSCAFG00000015036	CPSF4	100	73.964	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSCAFG00000015036	CPSF4	99	86.826	ENSSPAG00000006174	cpsf4	100	76.952	Stegastes_partitus
ENSCAFG00000015036	CPSF4	100	89.963	ENSSSCG00000026896	CPSF4	100	89.963	Sus_scrofa
ENSCAFG00000015036	CPSF4	99	85.882	ENSTGUG00000007552	CPSF4	100	83.395	Taeniopygia_guttata
ENSCAFG00000015036	CPSF4	99	86.228	ENSTRUG00000024220	cpsf4	100	80.952	Takifugu_rubripes
ENSCAFG00000015036	CPSF4	99	86.228	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSCAFG00000015036	CPSF4	87	89.316	ENSTBEG00000011406	CPSF4	100	89.316	Tupaia_belangeri
ENSCAFG00000015036	CPSF4	100	88.304	ENSTTRG00000003007	CPSF4	100	78.067	Tursiops_truncatus
ENSCAFG00000015036	CPSF4	99	88.824	ENSUAMG00000008051	CPSF4	85	89.069	Ursus_americanus
ENSCAFG00000015036	CPSF4	100	89.963	ENSUMAG00000009474	CPSF4	100	89.963	Ursus_maritimus
ENSCAFG00000015036	CPSF4	100	90.706	ENSVVUG00000008824	CPSF4	100	90.706	Vulpes_vulpes
ENSCAFG00000015036	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSCAFG00000015036	CPSF4	99	73.214	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSCAFG00000015036	CPSF4	99	86.667	ENSXCOG00000016040	cpsf4	100	83.962	Xiphophorus_couchianus
ENSCAFG00000015036	CPSF4	99	86.667	ENSXMAG00000024670	cpsf4	100	82.963	Xiphophorus_maculatus