EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000017230 (Gene tree)
Gene ID: 490810
Gene Symbol: SLIRP
Alias: -
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 7655 bases
Position: chr8:50471229-50478883
Accession: 51688
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000025380	RRM_1	PF00076.22	4.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000027289	-	336	XM_547932	ENSCAFP00000025380	111 (aa)	XP_547932	E2RSQ3

Gene Model

Click here to download ENSCAFG00000017230's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000017230's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000017230	SLIRP	78	32.895	ENSCAFG00000019528	DAZAP1	60	32.895

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000017230	SLIRP	100	86.486	ENSBTAG00000008135	SLIRP	90	85.000	Bos_taurus
ENSCAFG00000017230	SLIRP	92	77.451	ENSBTAG00000050457	-	98	78.000	Bos_taurus
ENSCAFG00000017230	SLIRP	100	100.000	ENSCAFG00020000852	-	100	100.000	Canis_lupus_dingo
ENSCAFG00000017230	SLIRP	100	76.577	ENSCHIG00000002964	-	90	77.000	Capra_hircus
ENSCAFG00000017230	SLIRP	100	86.486	ENSCHIG00000019077	-	93	86.000	Capra_hircus
ENSCAFG00000017230	SLIRP	100	77.477	ENSCPOG00000001500	-	90	77.000	Cavia_porcellus
ENSCAFG00000017230	SLIRP	100	72.973	ENSCLAG00000008545	-	90	72.000	Chinchilla_lanigera
ENSCAFG00000017230	SLIRP	78	63.218	ENSDNOG00000041397	-	79	63.218	Dasypus_novemcinctus
ENSCAFG00000017230	SLIRP	100	86.486	ENSECAG00000000712	SLIRP	90	86.000	Equus_caballus
ENSCAFG00000017230	SLIRP	89	80.808	ENSJJAG00000018723	-	100	78.378	Jaculus_jaculus
ENSCAFG00000017230	SLIRP	100	78.378	MGP_PahariEiJ_G0029754	-	90	80.000	Mus_pahari
ENSCAFG00000017230	SLIRP	90	80.000	ENSMLUG00000022403	-	100	79.279	Myotis_lucifugus
ENSCAFG00000017230	SLIRP	98	77.982	ENSOPRG00000007560	-	88	79.592	Ochotona_princeps
ENSCAFG00000017230	SLIRP	100	84.685	ENSOCUG00000009713	-	90	86.000	Oryctolagus_cuniculus
ENSCAFG00000017230	SLIRP	90	69.000	ENSOGAG00000027580	-	89	69.000	Otolemur_garnettii
ENSCAFG00000017230	SLIRP	100	71.171	ENSOARG00000016139	-	85	74.737	Ovis_aries
ENSCAFG00000017230	SLIRP	100	85.586	ENSOARG00000002642	SLIRP	90	85.000	Ovis_aries
ENSCAFG00000017230	SLIRP	86	62.500	ENSPCAG00000004290	-	89	61.616	Procavia_capensis
ENSCAFG00000017230	SLIRP	68	80.263	ENSPVAG00000006420	-	68	80.263	Pteropus_vampyrus
ENSCAFG00000017230	SLIRP	100	78.378	ENSRNOG00000012314	Slirp	90	80.000	Rattus_norvegicus
ENSCAFG00000017230	SLIRP	100	81.982	ENSTBEG00000013979	-	90	83.000	Tupaia_belangeri
ENSCAFG00000017230	SLIRP	70	82.051	ENSTTRG00000009328	-	90	68.000	Tursiops_truncatus